Wall clock time and date at job start Tue Mar 31 2020 04:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53120 * 109.52386 * 2 1 4 4 C 1.53036 * 109.28345 * 182.44085 * 3 2 1 5 5 N 1.46849 * 109.51868 * 59.17609 * 4 3 2 6 6 C 1.46904 * 110.99685 * 174.16526 * 5 4 3 7 7 C 1.50705 * 109.47044 * 293.60796 * 6 5 4 8 8 O 1.21286 * 120.00048 * 353.73117 * 7 6 5 9 9 N 1.34776 * 120.00368 * 173.73462 * 7 6 5 10 10 C 1.46500 * 119.99385 * 359.97438 * 9 7 6 11 11 C 1.46495 * 120.00504 * 180.02562 * 9 7 6 12 12 H 1.09009 * 110.91049 * 356.09526 * 11 9 7 13 13 C 1.55156 * 111.00751 * 119.99406 * 11 9 7 14 14 C 1.54320 * 103.10243 * 153.66437 * 13 11 9 15 15 N 1.47024 * 107.27382 * 337.72582 * 14 13 11 16 16 C 1.36938 * 125.65247 * 178.97846 * 15 14 13 17 17 H 1.07998 * 120.00271 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99725 * 359.96928 * 16 15 14 19 19 N 1.31619 * 119.99733 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99824 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46997 * 90.00040 * 20 18 16 22 22 H 1.48494 * 109.46841 * 209.99863 * 20 18 16 23 23 H 1.48500 * 109.47095 * 329.99913 * 20 18 16 24 24 C 1.47425 * 108.69915 * 358.93293 * 15 14 13 25 25 C 1.46847 * 111.20357 * 298.25939 * 5 4 3 26 26 C 1.53035 * 109.52177 * 61.74419 * 25 5 4 27 27 H 1.09001 * 109.47429 * 60.00025 * 1 2 3 28 28 H 1.09007 * 109.47026 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47190 * 299.99593 * 1 2 3 30 30 H 1.09002 * 109.52776 * 120.12722 * 2 1 3 31 31 H 1.08999 * 109.50147 * 62.49977 * 3 2 1 32 32 H 1.08999 * 109.50263 * 302.38474 * 3 2 1 33 33 H 1.09003 * 109.45776 * 299.16640 * 4 3 2 34 34 H 1.08994 * 109.46640 * 179.19667 * 4 3 2 35 35 H 1.08998 * 109.47297 * 173.60765 * 6 5 4 36 36 H 1.08999 * 109.47479 * 53.60456 * 6 5 4 37 37 H 1.09001 * 109.47274 * 269.99983 * 10 9 7 38 38 H 1.08994 * 109.47495 * 30.00573 * 10 9 7 39 39 H 1.09004 * 109.46683 * 150.00366 * 10 9 7 40 40 H 1.09004 * 110.71713 * 35.21583 * 13 11 9 41 41 H 1.08999 * 110.72531 * 272.12089 * 13 11 9 42 42 H 1.09000 * 109.88396 * 97.13787 * 14 13 11 43 43 H 1.09002 * 109.88731 * 218.30744 * 14 13 11 44 44 H 0.97003 * 119.99430 * 180.02562 * 19 18 16 45 45 H 1.09006 * 110.36732 * 142.96902 * 24 15 14 46 46 H 1.09002 * 110.37304 * 265.17866 * 24 15 14 47 47 H 1.08993 * 109.46509 * 181.75778 * 25 5 4 48 48 H 1.09001 * 109.46156 * 301.73204 * 25 5 4 49 49 H 1.08993 * 109.50476 * 180.88393 * 26 25 5 50 50 H 1.08995 * 109.50304 * 60.76095 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5708 1.4372 -0.0615 5 7 4.0102 0.7430 -1.2787 6 6 5.4670 0.8379 -1.4420 7 6 5.8515 2.2725 -1.6976 8 8 4.9906 3.1127 -1.8528 9 7 7.1519 2.6220 -1.7538 10 6 8.1917 1.6073 -1.5659 11 6 7.5257 4.0166 -2.0017 12 1 6.6430 4.6291 -2.1861 13 6 8.3616 4.5860 -0.8251 14 6 9.1995 5.6949 -1.4957 15 7 9.2669 5.3835 -2.9311 16 6 9.9037 6.1355 -3.8819 17 1 9.8959 5.8197 -4.9146 18 6 10.5592 7.3039 -3.5183 19 7 10.5681 7.6891 -2.2598 20 14 11.4273 8.3302 -4.8155 21 1 10.4798 9.3290 -5.3722 22 1 12.5818 9.0325 -4.1999 23 1 11.9103 7.4449 -5.9055 24 6 8.5362 4.1269 -3.1769 25 6 3.5708 -0.6582 -1.2790 26 6 2.0417 -0.7147 -1.2538 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8943 -0.5156 0.8885 31 1 1.7162 1.9447 0.9114 32 1 1.6446 1.9700 -0.8677 33 1 3.9674 0.9222 0.8135 34 1 3.9378 2.4634 -0.0761 35 1 5.7789 0.2224 -2.2857 36 1 5.9581 0.4864 -0.5346 37 1 8.4445 1.5376 -0.5079 38 1 7.8254 0.6424 -1.9163 39 1 9.0792 1.8870 -2.1337 40 1 9.0079 3.8162 -0.4033 41 1 7.7114 5.0050 -0.0572 42 1 8.7196 6.6624 -1.3486 43 1 10.2037 5.7085 -1.0719 44 1 11.0258 8.5058 -2.0058 45 1 8.0067 4.1758 -4.1285 46 1 9.2232 3.2807 -3.1690 47 1 3.9377 -1.1537 -2.1778 48 1 3.9674 -1.1633 -0.3983 49 1 1.7162 -1.7547 -1.2382 50 1 1.6447 -0.2217 -2.1412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033534816.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:07 Heat of formation + Delta-G solvation = -4.189325 kcal Electronic energy + Delta-G solvation = -26551.449815 eV Core-core repulsion = 23000.244367 eV Total energy + Delta-G solvation = -3551.205448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.18951 -38.89096 -37.21960 -34.76462 -34.67565 -32.14406 -31.00732 -29.72806 -29.03753 -27.55744 -26.74318 -25.72125 -24.19786 -23.36480 -22.10487 -20.44262 -20.10713 -19.84214 -18.70116 -17.15743 -16.96673 -16.10533 -15.74265 -15.64970 -14.78122 -14.63002 -14.61352 -14.34770 -14.16485 -14.05569 -13.36663 -13.28007 -13.03697 -12.70158 -12.60089 -12.55361 -12.32251 -12.11871 -11.99789 -11.95419 -11.71062 -11.67288 -11.35830 -10.93668 -10.89303 -10.83940 -10.73413 -10.50945 -10.43624 -10.26692 -10.08721 -9.81157 -9.70129 -9.45060 -8.62135 -8.44128 -8.28758 -6.83611 -5.71172 -3.05368 2.81019 3.03856 3.41283 3.46074 3.47866 3.79054 4.49180 4.51541 4.57078 4.59929 4.64136 4.98361 5.07247 5.08264 5.15307 5.22210 5.27824 5.32754 5.34675 5.41910 5.43788 5.44557 5.51187 5.55399 5.64164 5.64886 5.70735 5.76507 5.77345 5.83662 5.88157 5.91159 5.99571 6.04945 6.25625 6.27043 6.30050 6.49667 6.58823 6.71130 6.79032 6.94722 7.03307 7.54882 7.60575 7.65554 7.82503 8.24688 8.42481 9.21383 9.81371 10.46470 11.40376 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.033862 B = 0.002515 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.697593 B =11129.911631 C =11298.245283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.109 4.109 4 C 0.053 3.947 5 N -0.520 5.520 6 C 0.040 3.960 7 C 0.511 3.489 8 O -0.523 6.523 9 N -0.604 5.604 10 C 0.073 3.927 11 C 0.124 3.876 12 H 0.106 0.894 13 C -0.152 4.152 14 C 0.180 3.820 15 N -0.603 5.603 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.130 3.870 25 C 0.057 3.943 26 C -0.110 4.110 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.252 0.748 45 H 0.041 0.959 46 H 0.023 0.977 47 H 0.075 0.925 48 H 0.031 0.969 49 H 0.065 0.935 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.856 -19.890 6.432 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.146 4.146 4 C -0.074 4.074 5 N -0.245 5.245 6 C -0.091 4.091 7 C 0.298 3.702 8 O -0.398 6.398 9 N -0.337 5.337 10 C -0.070 4.070 11 C 0.021 3.979 12 H 0.124 0.876 13 C -0.191 4.191 14 C 0.055 3.945 15 N -0.330 5.330 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.003 3.997 25 C -0.071 4.071 26 C -0.148 4.148 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.040 0.960 47 H 0.093 0.907 48 H 0.050 0.950 49 H 0.084 0.916 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.405 -19.003 5.941 24.575 hybrid contribution 1.088 0.082 0.113 1.097 sum -13.317 -18.921 6.054 23.916 Atomic orbital electron populations 1.21807 0.95150 1.01426 1.01905 1.21209 0.95626 0.96565 0.97992 1.21609 0.94618 0.96051 1.02365 1.22200 0.96006 1.00271 0.88929 1.61550 1.10211 1.13687 1.39064 1.21983 0.89561 0.95270 1.02302 1.20431 0.82173 0.90435 0.77150 1.90683 1.48603 1.51942 1.48610 1.47829 1.05440 1.09459 1.71017 1.21819 0.92746 0.90897 1.01565 1.22481 0.98725 0.80173 0.96566 0.87601 1.23212 0.98681 0.99921 0.97274 1.21143 0.97028 0.93515 0.82851 1.44384 1.61445 1.22787 1.04349 1.19055 1.25753 1.02109 0.88735 0.90371 1.24819 1.00908 0.98169 0.96548 1.69964 1.47586 1.24623 1.14761 0.86093 0.78929 0.80247 0.80336 1.21542 1.21678 1.20688 1.21846 0.92252 0.90273 0.95318 1.22105 0.96209 0.88238 1.00566 1.21631 0.94358 1.00096 0.98705 0.92496 0.92917 0.92791 0.91771 0.91712 0.90749 0.95631 0.89173 0.87944 0.92310 0.92791 0.91603 0.89864 0.92293 0.92094 0.93341 0.93706 0.93715 0.94097 0.95963 0.90696 0.95046 0.91640 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.20 37.16 0.34 -0.69 16 2 C -0.10 -0.78 2.79 -90.49 -0.25 -1.04 16 3 C -0.11 -1.10 5.38 -26.65 -0.14 -1.24 16 4 C 0.05 0.62 5.12 -3.83 -0.02 0.60 16 5 N -0.52 -6.02 4.35 -236.11 -1.03 -7.05 16 6 C 0.04 0.44 3.91 -4.97 -0.02 0.42 16 7 C 0.51 7.77 7.21 -10.98 -0.08 7.69 16 8 O -0.52 -10.00 14.09 5.55 0.08 -9.92 16 9 N -0.60 -9.06 2.92 -171.18 -0.50 -9.56 16 10 C 0.07 0.81 9.09 59.85 0.54 1.36 16 11 C 0.12 2.33 3.47 -65.53 -0.23 2.11 16 12 H 0.11 2.25 7.02 -51.92 -0.36 1.88 16 13 C -0.15 -2.90 6.53 -24.90 -0.16 -3.06 16 14 C 0.18 4.40 5.37 -3.07 -0.02 4.38 16 15 N -0.60 -15.57 3.40 -169.77 -0.58 -16.14 16 16 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 19 N -0.92 -27.25 10.31 55.49 0.57 -26.68 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.13 2.74 6.80 -2.27 -0.02 2.72 16 25 C 0.06 0.50 5.46 -3.83 -0.02 0.48 16 26 C -0.11 -0.89 5.38 -26.65 -0.14 -1.04 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 1.30 6.06 -51.93 -0.31 0.98 16 35 H 0.10 0.94 7.55 -51.93 -0.39 0.55 16 36 H 0.06 0.55 7.90 -51.93 -0.41 0.14 16 37 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.07 0.54 6.61 -51.93 -0.34 0.20 16 39 H 0.08 1.01 5.93 -51.93 -0.31 0.71 16 40 H 0.06 1.02 7.29 -51.93 -0.38 0.64 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 43 H 0.04 1.20 7.51 -51.93 -0.39 0.81 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.02 0.45 5.95 -51.93 -0.31 0.14 16 47 H 0.07 0.59 8.01 -51.93 -0.42 0.17 16 48 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -32.40 376.55 -10.31 -42.71 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -9.05 Total: -2.07 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.46 Total: 5.79 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -1.53 Total: -59.43 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.40 -10.31 -42.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033534816.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.524 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds