Wall clock time and date at job start Tue Mar 31 2020 04:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53120 * 109.52163 * 2 1 4 4 C 1.53041 * 109.27441 * 177.62208 * 3 2 1 5 5 N 1.46848 * 109.52621 * 300.81952 * 4 3 2 6 6 C 1.46897 * 111.00027 * 185.84131 * 5 4 3 7 7 C 1.50702 * 109.47099 * 170.00025 * 6 5 4 8 8 O 1.21283 * 119.99575 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00335 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99594 * 0.02562 * 9 7 6 11 11 C 1.46501 * 120.00308 * 180.02562 * 9 7 6 12 12 H 1.08998 * 110.63621 * 358.31292 * 11 9 7 13 13 C 1.55161 * 110.71838 * 234.97556 * 11 9 7 14 14 C 1.54906 * 101.58017 * 277.13618 * 13 11 9 15 15 N 1.47416 * 104.83723 * 322.99154 * 14 13 11 16 16 C 1.36933 * 125.65449 * 204.09395 * 15 14 13 17 17 H 1.07993 * 120.00326 * 180.02562 * 16 15 14 18 18 C 1.38817 * 119.99318 * 0.03833 * 16 15 14 19 19 N 1.31613 * 120.00315 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99713 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47314 * 60.00381 * 20 18 16 22 22 H 1.48498 * 109.47150 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47318 * 300.00459 * 20 18 16 24 24 C 1.47025 * 108.70133 * 24.13087 * 15 14 13 25 25 C 1.46844 * 111.19492 * 61.74418 * 5 4 3 26 26 C 1.53042 * 109.52530 * 298.26040 * 25 5 4 27 27 H 1.08998 * 109.47125 * 60.00074 * 1 2 3 28 28 H 1.09005 * 109.47247 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47208 * 300.00021 * 1 2 3 30 30 H 1.08999 * 109.52227 * 239.87789 * 2 1 3 31 31 H 1.09000 * 109.50047 * 57.68446 * 3 2 1 32 32 H 1.08999 * 109.53883 * 297.58442 * 3 2 1 33 33 H 1.09004 * 109.45596 * 180.80702 * 4 3 2 34 34 H 1.09001 * 109.46582 * 60.84016 * 4 3 2 35 35 H 1.09000 * 109.47024 * 50.00018 * 6 5 4 36 36 H 1.08996 * 109.47066 * 289.99879 * 6 5 4 37 37 H 1.09001 * 109.47060 * 90.00388 * 10 9 7 38 38 H 1.09004 * 109.47073 * 209.99877 * 10 9 7 39 39 H 1.09000 * 109.47212 * 329.99960 * 10 9 7 40 40 H 1.09004 * 111.00077 * 35.21557 * 13 11 9 41 41 H 1.08997 * 110.99865 * 159.06257 * 13 11 9 42 42 H 1.09003 * 110.36556 * 204.15182 * 14 13 11 43 43 H 1.09001 * 110.36479 * 81.83482 * 14 13 11 44 44 H 0.96995 * 120.00162 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.88000 * 239.52360 * 24 15 14 46 46 H 1.08998 * 109.88691 * 118.36089 * 24 15 14 47 47 H 1.08999 * 109.46457 * 58.27560 * 25 5 4 48 48 H 1.09002 * 109.46502 * 178.24561 * 25 5 4 49 49 H 1.09008 * 109.50232 * 299.23825 * 26 25 5 50 50 H 1.09000 * 109.53529 * 179.14202 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5709 1.4370 0.0599 5 7 4.0116 0.7425 1.2764 6 6 5.4686 0.8373 1.4382 7 6 5.8560 0.3346 2.8051 8 8 5.0024 -0.0639 3.5690 9 7 7.1510 0.3269 3.1783 10 6 8.1821 0.8077 2.2552 11 6 7.5276 -0.1624 4.5068 12 1 6.6434 -0.4527 5.0742 13 6 8.3495 0.9076 5.2731 14 6 9.7724 0.6696 4.7089 15 7 9.8715 -0.7914 4.5387 16 6 11.0335 -1.5156 4.5178 17 1 10.9998 -2.5869 4.3865 18 6 12.2548 -0.8724 4.6657 19 7 12.2958 0.4332 4.8265 20 14 13.8399 -1.8602 4.6380 21 1 13.9611 -2.5653 3.3366 22 1 14.9963 -0.9457 4.8155 23 1 13.8226 -2.8552 5.7402 24 6 8.5160 -1.3422 4.3942 25 6 3.5722 -0.6587 1.2766 26 6 2.0430 -0.7152 1.2529 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8943 -0.5156 -0.8886 31 1 1.6456 1.9697 0.8683 32 1 1.7152 1.9457 -0.9105 33 1 3.9378 2.4633 0.0745 34 1 3.9667 0.9224 -0.8157 35 1 5.7790 1.8767 1.3319 36 1 5.9589 0.2318 0.6760 37 1 8.3343 1.8766 2.4054 38 1 9.1155 0.2777 2.4450 39 1 7.8637 0.6267 1.2286 40 1 7.9987 1.9124 5.0374 41 1 8.3200 0.7271 6.3476 42 1 10.5244 1.0210 5.4155 43 1 9.8887 1.1721 3.7487 44 1 13.1491 0.8826 4.9302 45 1 8.3229 -2.0645 5.1874 46 1 8.4122 -1.8211 3.4206 47 1 3.9679 -1.1635 0.3953 48 1 3.9400 -1.1546 2.1748 49 1 1.6469 -0.2225 2.1410 50 1 1.7169 -1.7551 1.2376 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033534817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:12 Heat of formation + Delta-G solvation = 0.750452 kcal Electronic energy + Delta-G solvation = -26885.463564 eV Core-core repulsion = 23334.472321 eV Total energy + Delta-G solvation = -3550.991243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.18071 -38.91790 -37.30662 -34.62004 -34.37309 -32.13647 -30.94685 -29.69224 -28.96979 -27.97002 -26.31829 -25.63795 -24.15801 -23.30366 -22.09078 -20.51076 -20.13917 -19.79642 -18.51128 -17.08177 -16.97049 -16.01225 -15.67024 -15.62899 -14.77162 -14.68688 -14.61515 -14.34891 -14.18763 -13.77791 -13.43542 -13.23885 -12.97121 -12.57121 -12.46966 -12.25299 -12.18133 -12.03665 -11.92422 -11.76662 -11.63295 -11.56953 -11.31011 -11.06660 -10.89952 -10.85746 -10.80330 -10.47479 -10.42495 -10.20668 -10.15400 -9.87448 -9.55980 -9.31117 -8.67690 -8.35613 -8.20048 -6.87514 -5.68951 -3.10996 2.88133 3.15852 3.37933 3.42726 3.43546 3.88943 4.46150 4.55419 4.62017 4.64206 4.72394 5.07382 5.13989 5.15411 5.25433 5.34101 5.38103 5.41905 5.44049 5.47349 5.47623 5.50076 5.55263 5.55761 5.68501 5.73027 5.82640 5.85770 5.87780 5.93125 5.94927 6.03110 6.10529 6.24139 6.29335 6.31951 6.38012 6.57313 6.61026 6.71619 6.86030 7.02078 7.09498 7.44957 7.59138 7.76820 7.82883 8.32340 8.49432 9.18343 9.78796 10.43453 11.34382 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.034305 B = 0.002662 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.022864 B =10514.918739 C =10537.607251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.109 4.109 4 C 0.056 3.944 5 N -0.520 5.520 6 C 0.039 3.961 7 C 0.513 3.487 8 O -0.533 6.533 9 N -0.596 5.596 10 C 0.069 3.931 11 C 0.127 3.873 12 H 0.099 0.901 13 C -0.154 4.154 14 C 0.145 3.855 15 N -0.603 5.603 16 C -0.223 4.223 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.914 3.086 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.127 3.873 25 C 0.050 3.950 26 C -0.107 4.107 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.021 0.979 44 H 0.253 0.747 45 H 0.032 0.968 46 H 0.025 0.975 47 H 0.024 0.976 48 H 0.096 0.904 49 H 0.073 0.927 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.190 2.957 -10.664 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.147 4.147 4 C -0.072 4.072 5 N -0.245 5.245 6 C -0.092 4.092 7 C 0.300 3.700 8 O -0.410 6.410 9 N -0.329 5.329 10 C -0.074 4.074 11 C 0.024 3.976 12 H 0.117 0.883 13 C -0.194 4.194 14 C 0.020 3.980 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.745 3.255 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.000 4.000 25 C -0.077 4.077 26 C -0.145 4.145 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.120 0.880 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.114 0.886 49 H 0.091 0.909 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.616 3.008 -9.845 21.273 hybrid contribution 1.407 -0.822 -0.875 1.850 sum -17.209 2.186 -10.721 20.392 Atomic orbital electron populations 1.21804 0.95203 1.01577 1.01664 1.21213 0.95555 0.96258 0.98425 1.21626 0.94405 0.96603 1.02089 1.22113 0.96115 0.98807 0.90195 1.61572 1.10230 1.15388 1.37331 1.21974 0.89389 1.02700 0.95113 1.20399 0.82105 0.78581 0.88906 1.90624 1.48918 1.47462 1.54042 1.47823 1.05980 1.62865 1.16186 1.22094 0.93693 1.00005 0.91579 1.22112 0.97843 0.95200 0.82494 0.88290 1.23344 0.99272 0.97181 0.99593 1.22119 0.92130 0.84297 0.99405 1.44538 0.99833 1.03216 1.85351 1.19023 0.82917 0.90857 1.42334 0.90602 1.24771 0.97599 0.95870 1.02295 1.69782 1.24027 1.06785 1.56457 0.86160 0.82818 0.78686 0.77858 1.21268 1.21593 1.21180 1.21639 0.86134 0.93938 0.98261 1.22273 0.95827 0.88078 1.01567 1.21598 0.94759 1.00040 0.98127 0.92931 0.92818 0.92546 0.91774 0.90939 0.91678 0.90715 0.95039 0.88033 0.92122 0.92719 0.87923 0.92458 0.92064 0.91109 0.87712 0.96094 0.93674 0.95021 0.95676 0.95756 0.88577 0.90876 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.20 37.16 0.34 -0.73 16 2 C -0.10 -0.83 2.79 -90.50 -0.25 -1.08 16 3 C -0.11 -0.94 5.38 -26.65 -0.14 -1.08 16 4 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 5 N -0.52 -6.40 4.40 -236.11 -1.04 -7.44 16 6 C 0.04 0.48 4.00 -4.98 -0.02 0.46 16 7 C 0.51 8.20 7.35 -10.99 -0.08 8.12 16 8 O -0.53 -10.06 13.69 5.55 0.08 -9.98 16 9 N -0.60 -9.83 2.82 -171.83 -0.49 -10.32 16 10 C 0.07 1.04 8.34 59.85 0.50 1.54 16 11 C 0.13 2.36 3.58 -66.09 -0.24 2.12 16 12 H 0.10 1.87 6.99 -51.93 -0.36 1.50 16 13 C -0.15 -2.95 6.53 -24.58 -0.16 -3.11 16 14 C 0.14 3.34 5.01 -2.54 -0.01 3.32 16 15 N -0.60 -14.83 2.97 -170.08 -0.50 -15.33 16 16 C -0.22 -6.03 10.27 -15.06 -0.15 -6.19 16 17 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -25.96 10.09 55.49 0.56 -25.41 16 20 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 C 0.13 2.67 6.24 -3.06 -0.02 2.65 16 25 C 0.05 0.62 5.10 -3.83 -0.02 0.60 16 26 C -0.11 -1.12 5.38 -26.65 -0.14 -1.26 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.65 8.02 -51.93 -0.42 0.23 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 1.09 7.95 -51.93 -0.41 0.68 16 36 H 0.06 0.68 7.38 -51.93 -0.38 0.30 16 37 H 0.05 0.77 7.99 -51.93 -0.41 0.36 16 38 H 0.10 1.92 5.19 -51.93 -0.27 1.65 16 39 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.11 2.78 5.87 -51.93 -0.30 2.47 16 43 H 0.02 0.49 5.53 -51.93 -0.29 0.20 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.03 0.54 8.04 -51.93 -0.42 0.12 16 47 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.10 1.44 5.78 -51.93 -0.30 1.14 16 49 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 372.15 15.07 5.61 5.61 Total: -1.00 -29.90 372.15 -10.27 -40.17 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.95 Total: 0.60 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -0.52 Total: 5.50 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -1.47 Total: -58.49 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.90 -10.27 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033534817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.922 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds