Wall clock time and date at job start Tue Mar 31 2020 05:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47474 * 2 1 4 4 C 1.50698 * 109.46868 * 239.99873 * 2 1 3 5 5 O 1.21282 * 120.00491 * 269.20954 * 4 2 1 6 6 N 1.34783 * 119.99928 * 89.21479 * 4 2 1 7 7 C 1.46501 * 119.99426 * 354.93120 * 6 4 2 8 8 C 1.46501 * 119.99962 * 174.92784 * 6 4 2 9 9 C 1.53953 * 113.73862 * 218.74020 * 8 6 4 10 10 N 1.47812 * 86.03072 * 222.08645 * 9 8 6 11 11 C 1.36942 * 134.45038 * 204.64043 * 10 9 8 12 12 H 1.07996 * 119.99586 * 184.70790 * 11 10 9 13 13 C 1.38809 * 120.00043 * 4.71392 * 11 10 9 14 14 N 1.31623 * 120.00243 * 5.22983 * 13 11 10 15 15 Si 1.86797 * 120.00020 * 185.23162 * 13 11 10 16 16 H 1.48495 * 109.47533 * 94.99188 * 15 13 11 17 17 H 1.48499 * 109.47318 * 214.99313 * 15 13 11 18 18 H 1.48502 * 109.47039 * 334.99368 * 15 13 11 19 19 C 1.47575 * 91.05436 * 24.55282 * 10 9 8 20 20 N 1.46904 * 109.46986 * 120.00660 * 2 1 3 21 21 C 1.48003 * 110.99613 * 313.16048 * 20 2 1 22 22 C 1.50450 * 112.82736 * 191.34925 * 21 20 2 23 23 C 1.54314 * 108.49935 * 93.72553 * 22 21 20 24 24 C 1.45877 * 112.18490 * 281.46461 * 23 22 21 25 25 C 1.54313 * 112.18455 * 61.12641 * 24 23 22 26 26 C 1.48003 * 110.99718 * 184.44625 * 20 2 1 27 27 H 1.08998 * 109.47014 * 177.13928 * 1 2 3 28 28 H 1.09000 * 109.46799 * 57.13764 * 1 2 3 29 29 H 1.08993 * 109.46773 * 297.13787 * 1 2 3 30 30 H 1.08994 * 109.47440 * 94.41753 * 7 6 4 31 31 H 1.09005 * 109.46203 * 214.41014 * 7 6 4 32 32 H 1.08998 * 109.47425 * 334.40832 * 7 6 4 33 33 H 1.08996 * 112.94606 * 350.33016 * 8 6 4 34 34 H 1.08998 * 113.76673 * 336.34902 * 9 8 6 35 35 H 1.09001 * 113.76861 * 107.74947 * 9 8 6 36 36 H 0.96996 * 120.00136 * 180.02562 * 14 13 11 37 37 H 1.08997 * 113.76708 * 221.15084 * 19 10 9 38 38 H 1.08997 * 113.77270 * 89.75221 * 19 10 9 39 39 H 1.09002 * 108.81501 * 312.21092 * 21 20 2 40 40 H 1.09000 * 108.81437 * 70.48972 * 21 20 2 41 41 H 1.09003 * 109.63033 * 334.03157 * 22 21 20 42 42 H 1.08996 * 109.63455 * 213.42991 * 22 21 20 43 43 H 1.09003 * 108.93496 * 160.76599 * 23 22 21 44 44 H 1.08996 * 108.93591 * 42.16507 * 23 22 21 45 45 H 1.08994 * 108.94356 * 300.42672 * 24 23 22 46 46 H 1.09004 * 108.93795 * 181.81764 * 24 23 22 47 47 H 1.08998 * 109.63437 * 161.75782 * 25 24 23 48 48 H 1.09001 * 109.63312 * 41.15750 * 25 24 23 49 49 H 1.08999 * 108.80978 * 205.69664 * 26 20 2 50 50 H 1.08996 * 108.81139 * 323.96695 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2481 -1.9034 -1.1964 6 7 2.2418 -0.0200 -2.3689 7 6 1.8771 1.3969 -2.4438 8 6 2.8344 -0.6865 -3.5312 9 6 3.8308 0.1928 -4.3085 10 7 3.1995 -0.3504 -5.5297 11 6 3.6086 -0.5234 -6.8251 12 1 2.9127 -0.8859 -7.5671 13 6 4.9175 -0.2328 -7.1842 14 7 5.7923 0.1100 -6.2624 15 14 5.4376 -0.3281 -8.9758 16 1 5.3439 1.0201 -9.5909 17 1 6.8383 -0.8141 -9.0595 18 1 4.5439 -1.2664 -9.7013 19 6 1.9529 -0.6333 -4.7922 20 7 2.0197 -0.6927 1.1994 21 6 1.3053 -0.2274 2.4092 22 6 1.9485 -0.6998 3.6847 23 6 2.9197 0.3935 4.1773 24 6 4.1803 0.3820 3.4432 25 6 3.9795 0.6480 1.9365 26 6 3.4953 -0.6203 1.2883 27 1 -0.3633 -1.0264 -0.0513 28 1 -0.3633 0.5576 -0.8632 29 1 -0.3632 0.4687 0.9145 30 1 2.7475 2.0091 -2.2086 31 1 1.5304 1.6299 -3.4507 32 1 1.0817 1.6057 -1.7283 33 1 3.2136 -1.6824 -3.3024 34 1 3.6730 1.2624 -4.1709 35 1 4.8717 -0.1049 -4.1810 36 1 6.7069 0.3134 -6.5134 37 1 1.4972 -1.5892 -5.0501 38 1 1.2423 0.1932 -4.7970 39 1 1.2853 0.8624 2.4084 40 1 0.2800 -0.5957 2.3754 41 1 2.4994 -1.6215 3.4975 42 1 1.1812 -0.8749 4.4388 43 1 3.1252 0.2333 5.2358 44 1 2.4473 1.3680 4.0540 45 1 4.6550 -0.5909 3.5705 46 1 4.8358 1.1500 3.8538 47 1 4.9263 0.9498 1.4886 48 1 3.2385 1.4355 1.7992 49 1 3.8545 -1.4706 1.8680 50 1 3.9114 -0.6823 0.2828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044005177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:26 Heat of formation + Delta-G solvation = 33.791257 kcal Electronic energy + Delta-G solvation = -27254.461357 eV Core-core repulsion = 23704.902870 eV Total energy + Delta-G solvation = -3549.558487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40696 -39.05022 -37.50411 -35.06514 -34.36032 -32.37468 -32.01170 -30.73451 -27.71947 -26.72416 -26.40756 -25.25954 -24.79931 -23.97927 -22.43852 -20.87033 -20.12832 -19.04940 -18.32317 -17.32356 -16.74824 -16.46823 -16.00908 -15.71737 -15.09940 -14.77301 -14.54163 -14.33260 -13.84026 -13.78837 -13.58371 -13.28555 -13.18696 -12.59895 -12.55729 -12.39111 -12.21359 -12.10708 -11.89939 -11.80136 -11.64240 -11.49928 -11.34610 -11.29709 -10.98774 -10.87309 -10.79526 -10.77233 -10.68047 -10.36529 -10.21001 -10.03411 -9.57408 -9.27516 -8.82082 -8.16919 -8.07514 -6.89785 -5.78210 -3.12638 2.90090 3.20526 3.38905 3.43885 3.46081 3.81953 4.44446 4.45149 4.51773 4.59491 4.79351 4.93064 4.95890 5.02376 5.11289 5.19407 5.20772 5.26337 5.27840 5.41223 5.47011 5.48751 5.50160 5.56219 5.59114 5.69880 5.76473 5.78025 5.83349 5.86004 5.89491 5.93078 6.00142 6.07082 6.11611 6.12524 6.20582 6.22205 6.45180 6.59250 6.81264 6.93823 7.08206 7.20938 7.38364 7.53547 7.83750 7.96432 8.58299 9.01571 9.68300 10.55636 11.37491 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.026329 B = 0.003031 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.228805 B = 9236.211311 C = 9804.861447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.058 0.942 4 C 0.515 3.485 5 O -0.523 6.523 6 N -0.603 5.603 7 C 0.076 3.924 8 C 0.095 3.905 9 C 0.149 3.851 10 N -0.606 5.606 11 C -0.222 4.222 12 H 0.081 0.919 13 C -0.007 4.007 14 N -0.918 5.918 15 Si 0.914 3.086 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.108 3.892 20 N -0.527 5.527 21 C 0.065 3.935 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.149 4.149 26 C 0.061 3.939 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.028 0.972 35 H 0.083 0.917 36 H 0.254 0.746 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.076 0.924 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.898 4.541 20.959 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.042 4.042 3 H 0.076 0.924 4 C 0.302 3.698 5 O -0.398 6.398 6 N -0.337 5.337 7 C -0.067 4.067 8 C -0.009 4.009 9 C 0.023 3.977 10 N -0.332 5.332 11 C -0.350 4.350 12 H 0.099 0.901 13 C -0.204 4.204 14 N -0.565 5.565 15 Si 0.744 3.256 16 H -0.217 1.217 17 H -0.216 1.216 18 H -0.205 1.205 19 C -0.019 4.019 20 N -0.253 5.253 21 C -0.061 4.061 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.189 4.189 26 C -0.066 4.066 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.046 0.954 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.094 0.906 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.647 3.413 20.654 22.650 hybrid contribution 0.536 1.165 -0.998 1.624 sum -8.112 4.578 19.657 21.752 Atomic orbital electron populations 1.21892 0.92401 1.03666 1.02399 1.21592 0.96856 0.95868 0.89908 0.92403 1.20391 0.77950 0.87608 0.83902 1.90679 1.50538 1.14597 1.83985 1.48082 1.61833 1.10785 1.13042 1.21802 0.99947 0.81769 1.03187 1.23974 0.96106 0.98841 0.81943 1.22767 0.97981 0.94129 0.82821 1.45650 1.10019 1.71188 1.06363 1.19000 0.94486 1.38416 0.83062 0.90114 1.24801 0.95672 1.01951 0.97971 1.69819 1.03378 1.52113 1.31195 0.86071 0.77860 0.77607 0.84059 1.21655 1.21627 1.20497 1.22972 0.91228 0.98050 0.89655 1.61555 1.04896 1.57872 1.00998 1.21804 0.98003 0.97487 0.88845 1.21446 0.98973 0.99421 0.96136 1.20604 0.96422 0.99010 0.99679 1.20548 0.97723 1.02027 0.95221 1.21947 1.01842 0.99115 0.95950 1.21875 0.86345 0.96825 1.01592 0.90939 0.91565 0.91430 0.92678 0.90526 0.91628 0.86789 0.95426 0.89846 0.93610 0.93556 0.94720 0.94952 0.90792 0.90433 0.91134 0.92232 0.92419 0.91877 0.92416 0.91121 0.91954 0.90550 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.43 37.16 0.31 -1.16 16 2 C 0.07 0.86 1.58 -68.86 -0.11 0.75 16 3 H 0.06 0.65 6.37 -51.93 -0.33 0.32 16 4 C 0.52 8.47 5.47 -10.98 -0.06 8.41 16 5 O -0.52 -10.69 15.81 5.56 0.09 -10.60 16 6 N -0.60 -9.92 3.09 -175.75 -0.54 -10.47 16 7 C 0.08 0.98 8.43 59.85 0.50 1.49 16 8 C 0.09 1.93 4.38 -70.15 -0.31 1.63 16 9 C 0.15 3.51 7.22 -2.83 -0.02 3.49 16 10 N -0.61 -15.71 3.70 -177.91 -0.66 -16.37 16 11 C -0.22 -6.28 10.69 -15.06 -0.16 -6.44 16 12 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 13 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 14 N -0.92 -27.21 11.29 55.49 0.63 -26.58 16 15 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.11 2.29 8.48 -2.97 -0.03 2.26 16 20 N -0.53 -6.43 4.27 -229.30 -0.98 -7.40 16 21 C 0.07 0.60 3.79 -4.49 -0.02 0.59 16 22 C -0.12 -0.99 5.63 -27.32 -0.15 -1.14 16 23 C -0.12 -0.89 5.30 -29.41 -0.16 -1.05 16 24 C -0.12 -0.97 5.30 -29.41 -0.16 -1.13 16 25 C -0.15 -1.47 5.56 -27.32 -0.15 -1.62 16 26 C 0.06 0.74 4.86 -4.49 -0.02 0.72 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.61 6.92 -51.93 -0.36 0.25 16 29 H 0.07 0.54 6.33 -51.93 -0.33 0.21 16 30 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.08 1.04 6.54 -51.93 -0.34 0.70 16 32 H 0.07 0.65 5.20 -51.93 -0.27 0.38 16 33 H 0.11 2.58 7.26 -51.93 -0.38 2.20 16 34 H 0.03 0.63 6.87 -51.93 -0.36 0.28 16 35 H 0.08 2.22 6.87 -51.93 -0.36 1.87 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.04 0.68 6.79 -51.93 -0.35 0.33 16 39 H 0.03 0.28 6.45 -51.93 -0.33 -0.05 16 40 H 0.07 0.65 6.84 -51.93 -0.36 0.30 16 41 H 0.08 0.73 7.08 -51.93 -0.37 0.36 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.42 7.52 -51.93 -0.39 0.03 16 45 H 0.06 0.54 7.52 -51.93 -0.39 0.14 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.61 6.61 -51.93 -0.34 0.27 16 49 H 0.08 0.94 6.59 -51.93 -0.34 0.59 16 50 H 0.07 1.05 6.56 -51.93 -0.34 0.71 16 LS Contribution 367.00 15.07 5.53 5.53 Total: -1.00 -32.53 367.00 -10.01 -42.55 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.44 Total: -0.32 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.62 Total: 6.49 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -1.55 Total: -60.82 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.53 -10.01 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044005177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.336 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds