Wall clock time and date at job start Tue Mar 31 2020 04:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47075 * 2 1 4 4 N 1.46908 * 109.46985 * 240.00317 * 2 1 3 5 5 C 1.46845 * 110.99740 * 65.77086 * 4 2 1 6 6 C 1.53045 * 109.52178 * 185.84203 * 5 4 2 7 7 C 1.53125 * 109.27400 * 300.82136 * 6 5 4 8 8 C 1.53118 * 109.16000 * 57.65344 * 7 6 5 9 9 C 1.46843 * 110.99858 * 189.98354 * 4 2 1 10 10 H 1.09007 * 109.46068 * 294.17161 * 9 4 2 11 11 C 1.50692 * 109.46376 * 54.14466 * 9 4 2 12 12 O 1.21280 * 120.00229 * 29.60632 * 11 9 4 13 13 N 1.34777 * 119.99722 * 209.60840 * 11 9 4 14 14 C 1.46500 * 120.00346 * 4.93854 * 13 11 9 15 15 C 1.46509 * 119.99865 * 184.94110 * 13 11 9 16 16 C 1.53950 * 113.73910 * 218.73986 * 15 13 11 17 17 N 1.47812 * 86.03707 * 222.08379 * 16 15 13 18 18 C 1.36930 * 134.45763 * 204.64708 * 17 16 15 19 19 H 1.08005 * 119.99807 * 179.86452 * 18 17 16 20 20 C 1.38815 * 120.00276 * 359.86470 * 18 17 16 21 21 N 1.31621 * 119.99588 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00175 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46850 * 60.00398 * 22 20 18 24 24 H 1.48498 * 109.46933 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47334 * 300.00227 * 22 20 18 26 26 C 1.47590 * 91.04756 * 24.54759 * 17 16 15 27 27 H 1.08994 * 109.47577 * 59.99976 * 1 2 3 28 28 H 1.09008 * 109.46880 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46946 * 299.99426 * 1 2 3 30 30 H 1.08994 * 109.47577 * 120.00023 * 2 1 3 31 31 H 1.08991 * 109.46967 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46947 * 300.00384 * 3 2 1 33 33 H 1.09000 * 109.47029 * 60.00027 * 3 2 1 34 34 H 1.08998 * 109.46348 * 305.85516 * 5 4 2 35 35 H 1.09000 * 109.46546 * 65.82881 * 5 4 2 36 36 H 1.09002 * 109.50256 * 60.75784 * 6 5 4 37 37 H 1.08993 * 109.50481 * 180.88249 * 6 5 4 38 38 H 1.09000 * 109.51946 * 177.55646 * 7 6 5 39 39 H 1.09001 * 109.52249 * 297.68225 * 7 6 5 40 40 H 1.09001 * 109.50166 * 62.28501 * 8 7 6 41 41 H 1.09004 * 109.49758 * 182.36147 * 8 7 6 42 42 H 1.09002 * 109.47264 * 84.85396 * 14 13 11 43 43 H 1.09003 * 109.47209 * 204.85683 * 14 13 11 44 44 H 1.09000 * 109.46876 * 324.85676 * 14 13 11 45 45 H 1.08997 * 112.94101 * 350.32819 * 15 13 11 46 46 H 1.09001 * 113.76749 * 336.34959 * 16 15 13 47 47 H 1.08997 * 113.77019 * 107.74242 * 16 15 13 48 48 H 0.97001 * 119.99715 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.76976 * 221.14859 * 26 17 16 50 50 H 1.08999 * 113.86793 * 89.77369 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 1.6646 0.0485 -2.4166 6 6 2.0602 -0.7704 -3.6476 7 6 3.5672 -1.0395 -3.6127 8 6 3.9175 -1.7691 -2.3128 9 6 3.4680 -0.9213 -1.1206 10 1 3.9886 0.0362 -1.1391 11 6 3.7930 -1.6447 0.1608 12 8 2.9794 -2.3949 0.6568 13 7 4.9879 -1.4578 0.7556 14 6 5.9279 -0.4715 0.2174 15 6 5.3467 -2.2412 1.9405 16 6 6.1138 -1.4373 3.0060 17 7 6.9714 -2.6333 3.1434 18 6 7.7586 -3.1392 4.1431 19 1 8.3000 -4.0611 3.9898 20 6 7.8609 -2.4673 5.3535 21 7 7.2006 -1.3441 5.5403 22 14 8.9342 -3.1579 6.7174 23 1 10.3375 -3.2553 6.2416 24 1 8.8736 -2.2591 7.8980 25 1 8.4453 -4.5077 7.0967 26 6 6.6367 -3.0642 1.7721 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.5899 0.2296 -2.4310 35 1 2.1936 1.0014 -2.4291 36 1 1.5212 -1.7178 -3.6430 37 1 1.8109 -0.2134 -4.5507 38 1 3.8464 -1.6592 -4.4648 39 1 4.1073 -0.0937 -3.6576 40 1 3.4076 -2.7321 -2.2874 41 1 4.9949 -1.9263 -2.2628 42 1 5.6894 0.5139 0.6177 43 1 6.9438 -0.7438 0.5036 44 1 5.8499 -0.4507 -0.8696 45 1 4.5099 -2.8137 2.3408 46 1 6.6349 -0.5663 2.6085 47 1 5.5250 -1.2129 3.8954 48 1 7.2723 -0.8744 6.3860 49 1 6.4646 -4.1364 1.6782 50 1 7.3109 -2.6734 1.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044006192.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:18 Heat of formation + Delta-G solvation = 30.242445 kcal Electronic energy + Delta-G solvation = -27637.268411 eV Core-core repulsion = 24087.556036 eV Total energy + Delta-G solvation = -3549.712375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.67426 -38.82382 -37.23480 -35.32352 -34.36827 -32.10006 -31.19887 -30.34704 -27.74619 -27.27565 -26.63850 -24.97434 -24.80901 -24.13025 -22.70519 -20.70745 -20.25109 -19.00530 -18.36115 -17.16751 -16.73185 -16.45511 -15.62756 -15.43387 -14.90812 -14.71420 -14.53743 -14.14790 -13.96236 -13.79748 -13.67440 -13.39143 -13.03020 -12.92317 -12.52972 -12.43876 -12.17528 -11.99416 -11.85613 -11.78024 -11.54021 -11.49128 -11.29423 -11.22063 -11.12719 -10.88733 -10.88221 -10.71338 -10.59984 -10.39214 -10.22387 -10.08885 -9.56267 -9.23034 -8.81329 -8.29150 -8.09639 -6.92298 -5.79567 -3.12471 2.86294 3.18769 3.39592 3.43414 3.44577 3.81824 4.44041 4.52430 4.62135 4.73687 4.86094 4.94027 5.04073 5.09425 5.10544 5.19351 5.24836 5.30181 5.37118 5.44164 5.47084 5.49242 5.52226 5.55774 5.62127 5.71598 5.74712 5.77693 5.81301 5.84262 5.90020 5.95336 6.00875 6.08574 6.13291 6.18863 6.21145 6.28772 6.43200 6.57310 6.79537 6.96964 7.06879 7.18737 7.35723 7.50950 7.79728 7.94239 8.52725 9.01238 9.67521 10.54619 11.37520 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.024697 B = 0.003327 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.473133 B = 8413.108345 C = 8965.846272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.068 3.932 3 C -0.187 4.187 4 N -0.509 5.509 5 C 0.052 3.948 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.106 4.106 9 C 0.069 3.931 10 H 0.060 0.940 11 C 0.516 3.484 12 O -0.525 6.525 13 N -0.601 5.601 14 C 0.076 3.924 15 C 0.091 3.909 16 C 0.158 3.842 17 N -0.606 5.606 18 C -0.224 4.224 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.108 3.892 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.115 0.885 46 H 0.031 0.969 47 H 0.076 0.924 48 H 0.255 0.745 49 H 0.046 0.954 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 6.436 -19.099 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.040 4.040 3 C -0.246 4.246 4 N -0.233 5.233 5 C -0.076 4.076 6 C -0.156 4.156 7 C -0.156 4.156 8 C -0.145 4.145 9 C -0.042 4.042 10 H 0.078 0.922 11 C 0.302 3.698 12 O -0.401 6.401 13 N -0.334 5.334 14 C -0.067 4.067 15 C -0.012 4.012 16 C 0.031 3.969 17 N -0.332 5.332 18 C -0.352 4.352 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.210 1.210 26 C -0.019 4.019 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.049 0.951 47 H 0.094 0.906 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.289 5.564 -18.502 21.890 hybrid contribution 1.293 0.693 0.799 1.671 sum -8.996 6.257 -17.704 20.820 Atomic orbital electron populations 1.21776 0.94155 1.02507 1.01059 1.21855 0.96140 0.92027 0.94002 1.22502 1.01359 0.98386 1.02314 1.61899 1.11344 1.48102 1.02002 1.22177 1.01019 0.94853 0.89550 1.21617 0.96174 1.01038 0.96789 1.21566 0.96358 1.00343 0.97288 1.21518 1.01009 0.99552 0.92381 1.21654 0.89932 0.98470 0.94192 0.92204 1.20373 0.81610 0.82552 0.85255 1.90678 1.47082 1.37568 1.64762 1.48064 1.16219 1.39500 1.29658 1.21799 0.94927 0.91903 0.98073 1.24012 0.97426 0.94805 0.84981 1.22655 0.89737 0.89803 0.94670 1.45689 1.54435 1.24214 1.08899 1.18950 1.20395 1.04986 0.90834 0.90111 1.24798 1.00459 0.97158 0.97873 1.69809 1.45019 1.17086 1.24817 0.86166 0.79988 0.78047 0.81357 1.21160 1.21522 1.20975 1.22969 0.92686 0.97560 0.88661 0.93026 0.91653 0.92404 0.88681 0.92810 0.92434 0.91860 0.90230 0.94633 0.90931 0.91633 0.91431 0.92164 0.90275 0.91034 0.92786 0.90009 0.91900 0.86692 0.95149 0.90589 0.93519 0.93552 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.12 37.16 0.34 -1.14 16 2 C 0.07 0.85 2.56 -67.71 -0.17 0.67 16 3 C -0.19 -1.99 8.45 37.16 0.31 -1.67 16 4 N -0.51 -6.20 4.20 -220.14 -0.93 -7.13 16 5 C 0.05 0.48 4.54 -3.83 -0.02 0.47 16 6 C -0.12 -0.97 6.09 -26.64 -0.16 -1.14 16 7 C -0.12 -0.97 6.00 -26.61 -0.16 -1.13 16 8 C -0.11 -1.14 5.23 -26.65 -0.14 -1.28 16 9 C 0.07 0.86 1.10 -68.88 -0.08 0.79 16 10 H 0.06 0.68 5.27 -51.93 -0.27 0.41 16 11 C 0.52 8.39 5.60 -10.99 -0.06 8.33 16 12 O -0.53 -10.52 14.81 5.56 0.08 -10.44 16 13 N -0.60 -9.80 3.09 -175.74 -0.54 -10.35 16 14 C 0.08 0.99 8.49 59.85 0.51 1.50 16 15 C 0.09 1.84 4.41 -70.13 -0.31 1.53 16 16 C 0.16 3.71 6.93 -2.84 -0.02 3.69 16 17 N -0.61 -15.63 3.70 -177.86 -0.66 -16.29 16 18 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 19 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 20 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -27.25 11.39 55.49 0.63 -26.62 16 22 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 C 0.11 2.27 8.43 -2.97 -0.03 2.24 16 27 H 0.05 0.47 6.43 -51.93 -0.33 0.14 16 28 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 1.52 5.77 -51.93 -0.30 1.22 16 31 H 0.05 0.60 6.81 -51.93 -0.35 0.24 16 32 H 0.06 0.53 6.46 -51.93 -0.34 0.19 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.70 6.21 -51.93 -0.32 0.37 16 35 H 0.04 0.32 6.58 -51.93 -0.34 -0.02 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.14 6.16 -51.93 -0.32 0.82 16 44 H 0.06 0.64 5.91 -51.93 -0.31 0.33 16 45 H 0.12 2.55 7.20 -51.93 -0.37 2.18 16 46 H 0.03 0.70 6.71 -51.93 -0.35 0.36 16 47 H 0.08 2.02 7.16 -51.93 -0.37 1.65 16 48 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.03 0.67 6.92 -51.93 -0.36 0.31 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -32.11 369.92 -9.61 -41.72 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.51 Total: 0.30 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.24 Total: 6.09 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -1.50 Total: -60.39 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.11 -9.61 -41.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044006192.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.963 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds