Wall clock time and date at job start Tue Mar 31 2020 05:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46899 * 109.47583 * 2 1 4 4 C 1.46838 * 111.00042 * 287.79739 * 3 2 1 5 5 C 1.53047 * 109.52350 * 174.15680 * 4 3 2 6 6 C 1.53120 * 109.27540 * 59.17975 * 5 4 3 7 7 C 1.53119 * 109.15934 * 302.34156 * 6 5 4 8 8 C 1.46850 * 110.99807 * 163.54023 * 3 2 1 9 9 H 1.08996 * 109.42507 * 65.80626 * 8 3 2 10 10 C 1.50698 * 109.49656 * 305.84384 * 8 3 2 11 11 O 1.21283 * 120.00171 * 330.83480 * 10 8 3 12 12 N 1.34774 * 120.00073 * 150.83967 * 10 8 3 13 13 C 1.46504 * 120.00223 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47232 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.84905 * 314.66658 * 14 13 12 16 16 C 1.53774 * 113.61247 * 85.86738 * 14 13 12 17 17 C 1.53958 * 87.01882 * 139.95259 * 16 14 13 18 18 H 1.09000 * 113.66327 * 220.06789 * 17 16 14 19 19 N 1.46498 * 113.61384 * 89.19738 * 17 16 14 20 20 C 1.36940 * 119.99992 * 107.46702 * 19 17 16 21 21 H 1.08002 * 119.99778 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00146 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99750 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99971 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47239 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47007 * 119.99850 * 24 22 20 27 27 H 1.48499 * 109.47169 * 239.99616 * 24 22 20 28 28 C 1.53782 * 113.61050 * 183.47507 * 14 13 12 29 29 H 1.09001 * 109.46902 * 299.99782 * 1 2 3 30 30 H 1.08997 * 109.47294 * 59.99544 * 1 2 3 31 31 H 1.09003 * 109.47526 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46902 * 240.00218 * 2 1 3 33 33 H 1.09004 * 109.46950 * 120.00632 * 2 1 3 34 34 H 1.08999 * 109.46904 * 54.14056 * 4 3 2 35 35 H 1.08998 * 109.45682 * 294.16446 * 4 3 2 36 36 H 1.08996 * 109.50252 * 299.23651 * 5 4 3 37 37 H 1.09000 * 109.53364 * 179.13702 * 5 4 3 38 38 H 1.08994 * 109.52105 * 182.44408 * 6 5 4 39 39 H 1.08995 * 109.52483 * 62.25132 * 6 5 4 40 40 H 1.08995 * 109.50292 * 177.59320 * 7 6 5 41 41 H 1.09002 * 109.51017 * 297.67948 * 7 6 5 42 42 H 0.97001 * 120.00410 * 0.02562 * 12 10 8 43 43 H 1.08992 * 109.47149 * 300.00229 * 13 12 10 44 44 H 1.09003 * 109.46598 * 60.00233 * 13 12 10 45 45 H 1.09003 * 113.61394 * 254.52962 * 16 14 13 46 46 H 1.08997 * 113.61954 * 25.43277 * 16 14 13 47 47 H 0.96998 * 120.00183 * 287.46679 * 19 17 16 48 48 H 0.96996 * 119.99505 * 180.02562 * 23 22 20 49 49 H 1.08997 * 113.61538 * 334.55946 * 28 14 13 50 50 H 1.08998 * 113.61428 * 105.38932 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8001 2.0208 -1.3052 5 6 2.1867 3.4994 -1.2254 6 6 3.6590 3.6159 -0.8212 7 6 3.8703 2.9041 0.5179 8 6 3.4347 1.4427 0.3885 9 1 4.0399 0.9493 -0.3721 10 6 3.6223 0.7438 1.7103 11 8 2.7154 0.7147 2.5150 12 7 4.7980 0.1510 1.9983 13 6 4.9806 -0.5280 3.2836 14 6 6.3936 -1.1103 3.3566 15 1 6.6854 -1.6287 2.4432 16 6 7.4469 -0.1097 3.8604 17 6 8.0577 -1.2769 4.6572 18 1 8.3946 -0.9965 5.6551 19 7 9.0637 -2.0350 3.9092 20 6 10.3897 -1.9145 4.2294 21 1 10.6937 -1.2609 5.0336 22 6 11.3429 -2.6333 3.5211 23 7 10.9722 -3.4302 2.5413 24 14 13.1515 -2.4694 3.9584 25 1 13.3034 -1.5176 5.0880 26 1 13.6875 -3.7968 4.3534 27 1 13.9016 -1.9633 2.7809 28 6 6.6608 -1.9197 4.6365 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 0.7486 1.9346 -1.5790 35 1 2.4132 1.5254 -2.0581 36 1 1.5647 3.9985 -0.4823 37 1 2.0382 3.9680 -2.1982 38 1 3.9270 4.6676 -0.7208 39 1 4.2839 3.1509 -1.5835 40 1 4.9248 2.9466 0.7902 41 1 3.2753 3.3942 1.2886 42 1 5.5236 0.1746 1.3550 43 1 4.8400 0.1861 4.0949 44 1 4.2506 -1.3320 3.3766 45 1 8.0984 0.2716 3.0740 46 1 7.0342 0.6793 4.4891 47 1 8.7906 -2.6223 3.1871 48 1 11.6383 -3.9327 2.0466 49 1 6.0328 -1.6264 5.4777 50 1 6.6772 -2.9977 4.4760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086558653.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:14 Heat of formation + Delta-G solvation = -12.616949 kcal Electronic energy + Delta-G solvation = -26075.875752 eV Core-core repulsion = 22524.304854 eV Total energy + Delta-G solvation = -3551.570898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.55240 -38.90223 -37.93523 -34.80419 -34.37993 -33.21781 -31.63716 -30.12987 -30.01458 -27.49159 -25.09077 -24.89318 -24.21769 -23.52308 -21.81347 -21.60293 -20.62656 -19.90687 -18.42517 -17.52811 -17.10867 -16.51840 -15.67713 -15.46545 -15.14767 -14.87817 -14.72214 -14.43652 -14.25566 -13.88067 -13.78622 -13.62398 -13.44089 -13.05028 -12.91954 -12.81139 -12.25461 -12.07919 -11.95779 -11.94079 -11.62111 -11.44248 -11.36955 -11.09236 -11.06469 -10.90016 -10.84699 -10.59855 -10.50400 -10.16819 -10.04506 -9.72344 -9.66848 -9.41840 -8.98488 -8.90540 -8.55242 -7.03010 -5.83923 -3.12891 2.59361 3.02937 3.39230 3.45383 3.47408 3.66269 4.43789 4.49260 4.53126 4.61067 4.79456 4.82922 4.93300 4.97525 5.04490 5.08612 5.14111 5.20749 5.22903 5.31718 5.36954 5.40816 5.42739 5.57565 5.59186 5.61005 5.68664 5.69447 5.80499 5.82848 5.85160 5.86241 5.93914 6.03894 6.09326 6.10564 6.19639 6.35080 6.42908 6.57372 6.71712 6.74225 6.83844 6.88180 7.01914 7.53438 7.66806 8.24236 8.35379 9.46129 10.03630 10.37785 11.38617 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.002489 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.380819 B =11248.248395 C =11768.390974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.516 5.516 4 C 0.055 3.945 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.106 4.106 8 C 0.071 3.929 9 H 0.058 0.942 10 C 0.514 3.486 11 O -0.525 6.525 12 N -0.725 5.725 13 C 0.132 3.868 14 C -0.119 4.119 15 H 0.092 0.908 16 C -0.168 4.168 17 C 0.167 3.833 18 H 0.062 0.938 19 N -0.706 5.706 20 C -0.241 4.241 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.148 4.148 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.401 0.599 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.077 0.923 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.076 11.491 -8.079 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 N -0.241 5.241 4 C -0.073 4.073 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.145 4.145 8 C -0.041 4.041 9 H 0.075 0.925 10 C 0.299 3.701 11 O -0.401 6.401 12 N -0.377 5.377 13 C 0.009 3.991 14 C -0.138 4.138 15 H 0.110 0.890 16 C -0.209 4.209 17 C 0.055 3.945 18 H 0.080 0.920 19 N -0.344 5.344 20 C -0.372 4.372 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.187 4.187 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.235 0.765 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.803 11.731 -7.053 24.073 hybrid contribution 1.760 -0.650 -1.097 2.174 sum -18.042 11.081 -8.150 22.688 Atomic orbital electron populations 1.21702 0.94533 1.01337 1.02303 1.22186 0.96763 0.88277 1.01020 1.61684 1.15521 1.17947 1.28993 1.22165 1.01365 0.94851 0.88872 1.21614 0.96594 0.95706 1.01713 1.21575 0.96689 1.00776 0.96672 1.21533 1.01513 0.92510 0.98904 1.21602 0.90520 0.97533 0.94461 0.92468 1.20387 0.82420 0.78632 0.88706 1.90700 1.41006 1.58897 1.49480 1.46144 1.15120 1.56199 1.20246 1.21461 0.97153 0.95905 0.84575 1.22706 0.92576 0.99066 0.99475 0.88982 1.23907 0.97941 0.97813 1.01256 1.21090 0.87751 0.90976 0.94672 0.91962 1.42181 1.02144 1.50860 1.39263 1.19340 0.82940 1.21352 1.13595 0.90929 1.24768 0.98188 0.99512 0.98475 1.69670 1.32795 1.31619 1.23996 0.86099 0.85217 0.77260 0.77506 1.20477 1.21812 1.21847 1.23438 0.99359 0.99813 0.96133 0.91579 0.93049 0.92471 0.95184 0.90007 0.90167 0.94889 0.90864 0.91410 0.91214 0.91966 0.90823 0.90265 0.76488 0.91604 0.91959 0.91533 0.91400 0.78134 0.93490 0.90463 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.97 37.15 0.37 -0.94 16 2 C 0.04 0.48 5.32 -3.83 -0.02 0.46 16 3 N -0.52 -5.49 4.21 -228.08 -0.96 -6.44 16 4 C 0.06 0.46 5.30 -3.83 -0.02 0.44 16 5 C -0.12 -0.86 6.09 -26.65 -0.16 -1.02 16 6 C -0.12 -0.89 6.00 -26.61 -0.16 -1.05 16 7 C -0.11 -0.99 5.35 -26.65 -0.14 -1.13 16 8 C 0.07 0.75 2.23 -68.87 -0.15 0.59 16 9 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 10 C 0.51 6.71 5.67 -10.99 -0.06 6.65 16 11 O -0.53 -8.73 15.41 5.55 0.09 -8.64 16 12 N -0.73 -8.78 5.56 -60.29 -0.33 -9.11 16 13 C 0.13 1.76 5.50 -4.04 -0.02 1.73 16 14 C -0.12 -1.75 3.63 -89.81 -0.33 -2.08 16 15 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 16 C -0.17 -2.74 7.44 -25.83 -0.19 -2.93 16 17 C 0.17 3.22 4.57 -67.02 -0.31 2.91 16 18 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 19 N -0.71 -17.17 5.31 -52.54 -0.28 -17.45 16 20 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 24 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 C -0.15 -2.34 7.39 -25.92 -0.19 -2.53 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.41 6.67 -51.93 -0.35 0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.29 8.05 -51.93 -0.42 -0.12 16 33 H 0.08 1.06 5.69 -51.93 -0.30 0.76 16 34 H 0.08 0.61 6.52 -51.93 -0.34 0.27 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 43 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 47 H 0.38 9.89 7.90 -40.82 -0.32 9.57 16 48 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 50 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -31.04 389.78 -10.74 -41.78 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -9.19 Total: 9.95 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.63 Total: -6.07 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.85 Total: -59.87 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.04 -10.74 -41.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086558653.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.160 kcal (2) G-P(sol) polarization free energy of solvation -31.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds