Wall clock time and date at job start Tue Mar 31 2020 05:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47287 * 2 1 4 4 C 1.46847 * 110.99615 * 294.67334 * 3 2 1 5 5 C 1.53041 * 109.51160 * 185.84270 * 4 3 2 6 6 C 1.53115 * 109.28056 * 300.80347 * 5 4 3 7 7 C 1.53120 * 109.15499 * 57.66749 * 6 5 4 8 8 C 1.46850 * 110.99721 * 58.87629 * 3 2 1 9 9 H 1.08999 * 109.46625 * 294.17008 * 8 3 2 10 10 C 1.50702 * 109.46076 * 54.14828 * 8 3 2 11 11 O 1.21278 * 120.00360 * 28.98792 * 10 8 3 12 12 N 1.34780 * 119.99786 * 208.98427 * 10 8 3 13 13 C 1.46496 * 119.99780 * 179.97438 * 12 10 8 14 14 H 1.08999 * 110.64187 * 323.31504 * 13 12 10 15 15 C 1.55157 * 110.71853 * 86.45891 * 13 12 10 16 16 C 1.54908 * 101.58459 * 153.86191 * 15 13 12 17 17 N 1.47425 * 104.83299 * 322.99099 * 16 15 13 18 18 C 1.36931 * 125.65158 * 204.16139 * 17 16 15 19 19 H 1.08003 * 120.00312 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00113 * 359.97429 * 18 17 16 21 21 N 1.31627 * 119.99785 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00299 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47119 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47043 * 120.00282 * 22 20 18 25 25 H 1.48496 * 109.47535 * 240.00030 * 22 20 18 26 26 C 1.47022 * 108.70302 * 24.12445 * 17 16 15 27 27 H 1.08999 * 109.88672 * 239.52357 * 26 17 16 28 28 C 1.53002 * 109.88087 * 118.35734 * 26 17 16 29 29 H 1.09001 * 109.47219 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47461 * 300.00071 * 1 2 3 31 31 H 1.09004 * 109.47207 * 60.00462 * 1 2 3 32 32 H 1.08998 * 109.47461 * 239.99928 * 2 1 3 33 33 H 1.08997 * 109.46957 * 119.99881 * 2 1 3 34 34 H 1.08999 * 109.45912 * 305.84712 * 4 3 2 35 35 H 1.08997 * 109.46671 * 65.82827 * 4 3 2 36 36 H 1.09006 * 109.50450 * 60.75345 * 5 4 3 37 37 H 1.08996 * 109.50360 * 180.86679 * 5 4 3 38 38 H 1.09003 * 109.52680 * 297.76460 * 6 5 4 39 39 H 1.08997 * 109.52591 * 177.57093 * 6 5 4 40 40 H 1.08995 * 109.50533 * 182.40271 * 7 6 5 41 41 H 1.08998 * 109.53302 * 62.29851 * 7 6 5 42 42 H 0.97003 * 120.00219 * 0.02562 * 12 10 8 43 43 H 1.09001 * 111.00471 * 271.93572 * 15 13 12 44 44 H 1.09001 * 111.00502 * 35.75198 * 15 13 12 45 45 H 1.09003 * 110.36856 * 81.82434 * 16 15 13 46 46 H 1.08996 * 110.37347 * 204.04192 * 16 15 13 47 47 H 0.96993 * 119.99838 * 179.97438 * 21 20 18 48 48 H 1.08994 * 109.47162 * 302.19079 * 28 26 17 49 49 H 1.09001 * 109.47045 * 62.19863 * 28 26 17 50 50 H 1.09003 * 109.46677 * 182.19473 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6555 2.0719 -1.2458 5 6 2.3035 3.4580 -1.2735 6 6 1.8225 4.2653 -0.0646 7 6 2.1710 3.5050 1.2180 8 6 1.5270 2.1174 1.1736 9 1 0.4440 2.2217 1.1084 10 6 1.8837 1.3579 2.4255 11 8 2.8721 0.6554 2.4477 12 7 1.1044 1.4595 3.5204 13 6 1.4509 0.7209 4.7372 14 1 1.8673 -0.2553 4.4886 15 6 2.4426 1.5348 5.6097 16 6 2.1425 0.9776 7.0237 17 7 0.6853 0.7549 7.0401 18 6 -0.1044 0.7212 8.1582 19 1 -1.1668 0.5509 8.0641 20 6 0.4604 0.9059 9.4127 21 7 1.7551 1.1140 9.5273 22 14 -0.6169 0.8608 10.9380 23 1 -2.0264 0.6134 10.5413 24 1 -0.1575 -0.2288 11.8364 25 1 -0.5232 2.1610 11.6490 26 6 0.2201 0.5757 5.6569 27 1 -0.5178 1.3396 5.4120 28 6 -0.3926 -0.8163 5.4902 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0070 1.4896 -2.0976 35 1 0.5719 2.1764 -1.2996 36 1 3.3879 3.3537 -1.2335 37 1 2.0207 3.9737 -2.1912 38 1 0.7429 4.4029 -0.1246 39 1 2.3147 5.2377 -0.0567 40 1 1.7933 4.0540 2.0805 41 1 3.2531 3.4015 1.2978 42 1 0.3137 2.0212 3.5026 43 1 3.4740 1.3325 5.3209 44 1 2.2260 2.6017 5.5556 45 1 2.6716 0.0378 7.1813 46 1 2.4255 1.7038 7.7856 47 1 2.1497 1.2434 10.4038 48 1 0.3460 -1.5726 5.7557 49 1 -1.2609 -0.9115 6.1423 50 1 -0.6996 -0.9563 4.4537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089059121.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:37 Heat of formation + Delta-G solvation = -11.492415 kcal Electronic energy + Delta-G solvation = -27386.284172 eV Core-core repulsion = 23834.762038 eV Total energy + Delta-G solvation = -3551.522134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.53312 -38.61171 -37.21086 -34.60282 -33.92846 -32.17106 -31.19026 -30.35113 -29.65622 -28.57390 -25.66278 -24.51825 -24.00080 -23.62029 -22.08593 -20.71400 -20.09029 -19.92878 -19.12141 -17.01242 -16.76021 -16.26560 -15.73759 -15.50212 -14.92635 -14.55041 -14.47390 -14.22542 -13.97025 -13.71342 -13.55887 -13.38957 -13.07738 -12.83214 -12.68940 -12.40818 -12.13904 -11.97147 -11.91084 -11.67045 -11.57578 -11.23788 -11.13561 -10.96054 -10.88418 -10.84616 -10.74083 -10.60830 -10.47557 -10.34964 -10.07249 -9.76346 -9.60564 -9.35189 -8.68432 -8.58036 -8.39218 -6.88244 -5.66297 -3.09328 2.80683 3.21294 3.38444 3.43891 3.46416 3.82610 4.46463 4.54557 4.60614 4.69458 4.84071 4.97170 5.03192 5.05193 5.07547 5.20188 5.29936 5.32832 5.41655 5.46077 5.48819 5.55065 5.56377 5.64535 5.70483 5.75153 5.82539 5.86110 5.88800 5.92710 6.06741 6.11621 6.16774 6.25773 6.30659 6.36649 6.55075 6.61050 6.73623 6.83040 6.86879 6.93784 7.13175 7.52374 7.62062 7.78283 7.85139 8.34095 8.48926 9.19765 9.80642 10.44618 11.36966 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.026323 B = 0.003172 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.456620 B = 8824.758812 C = 9205.876106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 N -0.513 5.513 4 C 0.055 3.945 5 C -0.119 4.119 6 C -0.119 4.119 7 C -0.108 4.108 8 C 0.070 3.930 9 H 0.059 0.941 10 C 0.517 3.483 11 O -0.523 6.523 12 N -0.717 5.717 13 C 0.137 3.863 14 H 0.090 0.910 15 C -0.152 4.152 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.220 4.220 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.156 3.844 27 H 0.035 0.965 28 C -0.155 4.155 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.395 0.605 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.014 0.986 46 H 0.109 0.891 47 H 0.252 0.748 48 H 0.052 0.948 49 H 0.053 0.947 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 4.085 -21.602 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.086 4.086 3 N -0.237 5.237 4 C -0.073 4.073 5 C -0.157 4.157 6 C -0.156 4.156 7 C -0.146 4.146 8 C -0.042 4.042 9 H 0.077 0.923 10 C 0.301 3.699 11 O -0.398 6.398 12 N -0.368 5.368 13 C 0.033 3.967 14 H 0.108 0.892 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.320 5.320 18 C -0.348 4.348 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.048 3.952 27 H 0.052 0.948 28 C -0.214 4.214 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.229 0.771 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.032 0.968 46 H 0.126 0.874 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.011 3.568 -21.305 21.625 hybrid contribution -1.909 0.133 0.775 2.064 sum -2.920 3.701 -20.530 21.064 Atomic orbital electron populations 1.22455 0.98407 1.02631 1.01681 1.22329 0.92511 0.89673 1.04121 1.61899 1.59365 1.01813 1.00635 1.22133 0.97884 0.95277 0.92020 1.21619 1.01652 0.94568 0.97840 1.21569 1.00954 0.98695 0.94408 1.21546 1.02360 0.92443 0.98276 1.21611 0.98186 0.94557 0.89839 0.92312 1.20294 0.83508 0.81911 0.84157 1.90687 1.26218 1.39341 1.83598 1.46139 1.28804 1.49077 1.12805 1.22116 0.96363 0.95568 0.82669 0.89203 1.23385 0.98013 0.99235 0.98545 1.21943 0.83642 0.99316 0.92315 1.44497 1.04153 1.83932 0.99457 1.19064 0.90582 1.41626 0.83568 0.90440 1.24793 0.96038 1.02281 0.97497 1.69812 1.09217 1.55728 1.22083 0.86012 0.79204 0.77248 0.83096 1.20568 1.21770 1.21761 1.20980 0.92768 0.94865 0.86620 0.94765 1.22237 1.01236 0.98993 0.98955 0.91860 0.92576 0.92674 0.90606 0.89091 0.90499 0.94677 0.90850 0.91526 0.92123 0.91300 0.90890 0.90204 0.77084 0.91981 0.92071 0.96810 0.87364 0.93741 0.92914 0.92750 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 9.22 37.16 0.34 -1.50 16 2 C 0.04 0.47 5.58 -3.82 -0.02 0.45 16 3 N -0.51 -5.87 4.46 -228.07 -1.02 -6.89 16 4 C 0.05 0.48 5.03 -3.83 -0.02 0.46 16 5 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 6 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 7 C -0.11 -1.12 5.36 -26.65 -0.14 -1.26 16 8 C 0.07 0.81 1.64 -68.87 -0.11 0.69 16 9 H 0.06 0.60 6.62 -51.93 -0.34 0.26 16 10 C 0.52 7.68 5.88 -10.98 -0.06 7.62 16 11 O -0.52 -9.82 14.89 5.56 0.08 -9.73 16 12 N -0.72 -10.47 5.20 -52.03 -0.27 -10.74 16 13 C 0.14 2.49 2.76 -66.09 -0.18 2.31 16 14 H 0.09 1.77 7.41 -51.93 -0.38 1.38 16 15 C -0.15 -3.04 6.77 -24.58 -0.17 -3.21 16 16 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 17 N -0.60 -14.77 3.13 -162.57 -0.51 -15.27 16 18 C -0.22 -5.96 9.89 -15.06 -0.15 -6.11 16 19 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.16 3.10 3.48 -66.95 -0.23 2.87 16 27 H 0.03 0.66 7.69 -51.93 -0.40 0.27 16 28 C -0.15 -2.85 9.14 37.16 0.34 -2.51 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.57 6.46 -51.93 -0.34 0.24 16 31 H 0.05 0.46 6.66 -51.93 -0.35 0.12 16 32 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.09 1.29 6.01 -51.93 -0.31 0.98 16 34 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 35 H 0.04 0.29 6.74 -51.93 -0.35 -0.06 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.40 4.85 8.31 -40.82 -0.34 4.51 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 50 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -30.82 376.64 -10.33 -41.15 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -8.99 Total: 4.12 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.84 Total: 0.92 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -1.24 Total: -58.93 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.82 -10.33 -41.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089059121.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.661 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds