Wall clock time and date at job start Tue Mar 31 2020 05:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47310 * 2 1 4 4 C 1.46851 * 111.00063 * 288.22971 * 3 2 1 5 5 C 1.53032 * 109.52758 * 174.16021 * 4 3 2 6 6 C 1.53126 * 109.27785 * 59.17736 * 5 4 3 7 7 C 1.53121 * 109.15918 * 302.35046 * 6 5 4 8 8 C 1.46843 * 111.00255 * 164.02255 * 3 2 1 9 9 H 1.08998 * 109.46938 * 65.82001 * 8 3 2 10 10 C 1.50704 * 109.45953 * 305.84019 * 8 3 2 11 11 O 1.21282 * 120.00144 * 330.95758 * 10 8 3 12 12 N 1.34781 * 119.99875 * 150.95521 * 10 8 3 13 13 C 1.46500 * 119.99869 * 180.02562 * 12 10 8 14 14 H 1.09002 * 110.63677 * 328.13572 * 13 12 10 15 15 C 1.55156 * 110.72326 * 91.47294 * 13 12 10 16 16 C 1.54907 * 101.57946 * 153.86554 * 15 13 12 17 17 N 1.47423 * 104.83656 * 322.98843 * 16 15 13 18 18 C 1.36931 * 125.65476 * 204.09895 * 17 16 15 19 19 H 1.07998 * 120.00064 * 180.02562 * 18 17 16 20 20 C 1.38820 * 119.99735 * 0.03401 * 18 17 16 21 21 N 1.31617 * 119.99820 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99745 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47114 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46924 * 120.00570 * 22 20 18 25 25 H 1.48500 * 109.46721 * 240.00017 * 22 20 18 26 26 C 1.47031 * 108.70063 * 24.13083 * 17 16 15 27 27 H 1.08999 * 109.88339 * 239.52579 * 26 17 16 28 28 C 1.52989 * 110.01048 * 118.42822 * 26 17 16 29 29 H 1.08997 * 109.47401 * 300.00444 * 1 2 3 30 30 H 1.09002 * 109.47050 * 60.00006 * 1 2 3 31 31 H 1.09001 * 109.47316 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46900 * 239.99662 * 2 1 3 33 33 H 1.08997 * 109.46603 * 119.99987 * 2 1 3 34 34 H 1.09001 * 109.45915 * 294.17821 * 4 3 2 35 35 H 1.09004 * 109.46310 * 54.14506 * 4 3 2 36 36 H 1.08996 * 109.50824 * 179.11645 * 5 4 3 37 37 H 1.09002 * 109.50250 * 299.24210 * 5 4 3 38 38 H 1.08998 * 109.51959 * 62.24883 * 6 5 4 39 39 H 1.09002 * 109.52443 * 182.37772 * 6 5 4 40 40 H 1.08998 * 109.49884 * 297.70884 * 7 6 5 41 41 H 1.09002 * 109.49897 * 177.59700 * 7 6 5 42 42 H 0.97000 * 120.00245 * 359.97438 * 12 10 8 43 43 H 1.08995 * 111.00286 * 271.93881 * 15 13 12 44 44 H 1.08993 * 111.00545 * 35.79007 * 15 13 12 45 45 H 1.09003 * 110.36956 * 204.15169 * 16 15 13 46 46 H 1.08998 * 110.46445 * 81.87728 * 16 15 13 47 47 H 0.97003 * 120.00008 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.47697 * 302.11355 * 28 26 17 49 49 H 1.08999 * 109.47522 * 62.11774 * 28 26 17 50 50 H 1.09000 * 109.47405 * 182.11323 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7908 2.0240 -1.3022 5 6 2.1779 3.5024 -1.2214 6 6 3.6530 3.6180 -0.8274 7 6 3.8739 2.9027 0.5083 8 6 3.4377 1.4417 0.3773 9 1 4.0375 0.9509 -0.3890 10 6 3.6349 0.7390 1.6958 11 8 2.7332 0.7059 2.5062 12 7 4.8134 0.1473 1.9744 13 6 5.0049 -0.5364 3.2559 14 1 4.4247 -0.0510 4.0407 15 6 4.6297 -2.0373 3.1389 16 6 5.4996 -2.6633 4.2575 17 7 6.7617 -1.9022 4.2248 18 6 7.9756 -2.3500 4.6729 19 1 8.8449 -1.7128 4.6049 20 6 8.0890 -3.6232 5.2144 21 7 7.0297 -4.4000 5.2967 22 14 9.7449 -4.2338 5.8264 23 1 10.7680 -3.1770 5.6233 24 1 9.6492 -4.5583 7.2724 25 1 10.1335 -5.4516 5.0706 26 6 6.5009 -0.5822 3.6320 27 1 7.1118 -0.4496 2.7390 28 6 6.8165 0.5188 4.6463 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 2.3983 1.5304 -2.0607 35 1 0.7373 1.9385 -1.5685 36 1 2.0227 3.9728 -2.1923 37 1 1.5612 3.9997 -0.4727 38 1 4.2725 3.1548 -1.5954 39 1 3.9221 4.6695 -0.7275 40 1 3.2840 3.3906 1.2842 41 1 4.9305 2.9448 0.7732 42 1 5.5344 0.1733 1.3261 43 1 3.5690 -2.1914 3.3365 44 1 4.9052 -2.4339 2.1618 45 1 5.6863 -3.7166 4.0482 46 1 5.0134 -2.5503 5.2265 47 1 7.1089 -5.2898 5.6747 48 1 6.2154 0.3697 5.5433 49 1 7.8741 0.4804 4.9071 50 1 6.5848 1.4910 4.2112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089059122.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:41 Heat of formation + Delta-G solvation = -13.045218 kcal Electronic energy + Delta-G solvation = -27181.578580 eV Core-core repulsion = 23629.989111 eV Total energy + Delta-G solvation = -3551.589469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.43343 -38.56579 -37.21785 -34.54841 -33.90278 -32.18380 -31.25838 -30.35424 -29.91028 -28.58283 -25.47770 -24.50727 -24.02209 -23.60560 -21.60894 -20.69421 -20.14525 -20.00282 -19.40839 -17.15275 -16.81125 -16.35602 -15.45907 -15.30136 -14.89826 -14.72733 -14.59612 -14.17778 -13.91965 -13.69808 -13.56425 -13.37307 -13.27681 -12.76450 -12.71936 -12.14876 -11.98387 -11.93875 -11.83421 -11.57143 -11.53322 -11.29487 -11.15072 -11.03495 -10.88585 -10.84224 -10.78949 -10.52620 -10.49923 -10.40260 -10.08001 -9.75155 -9.60169 -9.36969 -8.68762 -8.58249 -8.44338 -6.88612 -5.66790 -3.09634 2.78632 3.19792 3.38261 3.43819 3.46266 3.78418 4.46107 4.53675 4.58759 4.67982 4.89278 4.95357 5.02588 5.08082 5.23834 5.28468 5.31090 5.41169 5.42371 5.45637 5.48823 5.55192 5.62603 5.65075 5.66915 5.77579 5.82640 5.87246 5.90295 5.99750 6.11445 6.12103 6.21255 6.25094 6.31438 6.35593 6.53218 6.61113 6.70663 6.84796 6.87490 6.94845 7.13048 7.51152 7.61755 7.77172 7.84109 8.33380 8.47051 9.19365 9.80334 10.44266 11.36560 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.003136 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.268314 B = 8925.802703 C = 9583.060366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.045 3.955 3 N -0.515 5.515 4 C 0.055 3.945 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.106 4.106 8 C 0.071 3.929 9 H 0.056 0.944 10 C 0.515 3.485 11 O -0.522 6.522 12 N -0.717 5.717 13 C 0.136 3.864 14 H 0.093 0.907 15 C -0.152 4.152 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.220 4.220 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.155 3.845 27 H 0.035 0.965 28 C -0.155 4.155 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.029 0.971 33 H 0.085 0.915 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.396 0.604 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.109 0.891 46 H 0.014 0.986 47 H 0.252 0.748 48 H 0.051 0.949 49 H 0.053 0.947 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 13.597 -14.811 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.241 5.241 4 C -0.073 4.073 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.144 4.144 8 C -0.041 4.041 9 H 0.074 0.926 10 C 0.300 3.700 11 O -0.397 6.397 12 N -0.368 5.368 13 C 0.031 3.969 14 H 0.111 0.889 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.321 5.321 18 C -0.348 4.348 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.047 3.953 27 H 0.052 0.948 28 C -0.214 4.214 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.050 0.950 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.230 0.770 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.126 0.874 46 H 0.032 0.968 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.712 13.625 -13.752 21.658 hybrid contribution 1.705 -0.795 -0.527 1.954 sum -8.007 12.830 -14.279 20.799 Atomic orbital electron populations 1.21702 0.94592 1.01361 1.02196 1.22196 0.96702 0.88189 1.01197 1.61691 1.15238 1.17957 1.29195 1.22160 1.01310 0.94765 0.89024 1.21612 0.96567 0.95788 1.01653 1.21575 0.96666 1.00652 0.96760 1.21529 1.01429 0.92658 0.98831 1.21600 0.90405 0.97378 0.94681 0.92626 1.20314 0.82561 0.78578 0.88594 1.90703 1.41179 1.59070 1.48796 1.46141 1.14996 1.55791 1.19875 1.22143 0.97234 0.92976 0.84530 0.88860 1.23383 1.00014 0.94485 1.01333 1.21940 0.83536 0.99190 0.92541 1.44501 1.05936 1.09859 1.71767 1.19071 0.85315 0.97555 1.32858 0.90415 1.24792 0.97546 0.96864 1.01422 1.69806 1.26917 1.09339 1.50833 0.86011 0.82828 0.78507 0.78215 1.20548 1.21763 1.21776 1.20994 0.91529 0.87887 0.94895 0.94774 1.22230 1.01824 0.97226 1.00149 0.91566 0.93171 0.92443 0.95293 0.89674 0.95009 0.90212 0.91510 0.90849 0.92091 0.91322 0.90222 0.90911 0.77004 0.92099 0.92114 0.87369 0.96762 0.93748 0.92939 0.92765 0.94333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.96 37.16 0.37 -1.12 16 2 C 0.04 0.54 5.32 -3.83 -0.02 0.52 16 3 N -0.52 -6.03 4.21 -228.09 -0.96 -6.99 16 4 C 0.06 0.50 5.30 -3.83 -0.02 0.48 16 5 C -0.12 -0.92 6.09 -26.65 -0.16 -1.09 16 6 C -0.12 -0.92 6.00 -26.60 -0.16 -1.08 16 7 C -0.11 -1.05 5.35 -26.65 -0.14 -1.19 16 8 C 0.07 0.83 2.23 -68.88 -0.15 0.67 16 9 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 10 C 0.51 7.67 5.69 -10.98 -0.06 7.60 16 11 O -0.52 -9.78 15.03 5.56 0.08 -9.69 16 12 N -0.72 -10.48 5.18 -52.03 -0.27 -10.75 16 13 C 0.14 2.46 2.85 -66.09 -0.19 2.28 16 14 H 0.09 1.85 7.26 -51.93 -0.38 1.47 16 15 C -0.15 -3.02 6.77 -24.58 -0.17 -3.18 16 16 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 17 N -0.60 -14.77 3.13 -162.57 -0.51 -15.28 16 18 C -0.22 -5.95 9.89 -15.06 -0.15 -6.10 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.56 10.09 55.49 0.56 -26.00 16 22 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.16 3.10 3.47 -66.95 -0.23 2.86 16 27 H 0.03 0.66 7.72 -51.93 -0.40 0.26 16 28 C -0.15 -2.88 9.14 37.15 0.34 -2.54 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.45 6.65 -51.93 -0.35 0.11 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.03 0.32 8.05 -51.93 -0.42 -0.10 16 33 H 0.08 1.26 5.69 -51.93 -0.30 0.97 16 34 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.67 6.50 -51.93 -0.34 0.33 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.40 4.86 8.37 -40.82 -0.34 4.52 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.11 2.95 5.87 -51.93 -0.30 2.64 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.05 1.04 8.05 -51.93 -0.42 0.62 16 50 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 380.37 15.07 5.73 5.73 Total: -1.00 -30.80 380.37 -10.37 -41.17 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -9.13 Total: 3.60 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.86 Total: 1.43 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -1.18 Total: -59.02 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.80 -10.37 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089059122.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.121 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds