Wall clock time and date at job start Tue Mar 31 2020 04:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47078 * 2 1 4 4 C 1.52998 * 109.47469 * 120.00298 * 2 1 3 5 5 H 1.08997 * 109.46920 * 54.08832 * 4 2 1 6 6 C 1.50694 * 109.47381 * 174.09322 * 4 2 1 7 7 O 1.21281 * 120.00259 * 64.67390 * 6 4 2 8 8 N 1.34780 * 120.00097 * 244.68146 * 6 4 2 9 9 C 1.46498 * 120.00058 * 179.97438 * 8 6 4 10 10 H 1.08997 * 110.56043 * 32.09482 * 9 8 6 11 11 C 1.54855 * 110.76049 * 269.10202 * 9 8 6 12 12 C 1.55841 * 103.44749 * 241.44458 * 11 9 8 13 13 H 1.09002 * 116.12820 * 159.15032 * 12 11 9 14 14 C 1.55839 * 105.06667 * 288.18040 * 12 11 9 15 15 C 1.54851 * 103.44833 * 71.82392 * 14 12 11 16 16 C 1.55847 * 110.62313 * 155.00408 * 9 8 6 17 17 H 1.08998 * 115.55872 * 319.82994 * 16 9 8 18 18 N 1.50231 * 101.05579 * 85.71172 * 16 9 8 19 19 C 1.36937 * 130.83622 * 233.94791 * 18 16 9 20 20 H 1.07999 * 120.00124 * 359.97438 * 19 18 16 21 21 C 1.38811 * 119.99716 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00226 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00070 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46662 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47342 * 119.99734 * 23 21 19 26 26 H 1.48496 * 109.47515 * 240.00070 * 23 21 19 27 27 N 1.46906 * 109.46949 * 294.09325 * 4 2 1 28 28 C 1.46895 * 110.99703 * 144.45339 * 27 4 2 29 29 C 1.46895 * 110.99557 * 268.40661 * 27 4 2 30 30 H 1.09005 * 109.46987 * 305.02670 * 1 2 3 31 31 H 1.09001 * 109.47382 * 65.02545 * 1 2 3 32 32 H 1.09000 * 109.47466 * 185.02850 * 1 2 3 33 33 H 1.09002 * 109.46879 * 240.00842 * 2 1 3 34 34 H 1.09004 * 109.47238 * 284.45755 * 3 2 1 35 35 H 1.09004 * 109.47082 * 44.45917 * 3 2 1 36 36 H 1.08996 * 109.47223 * 164.45878 * 3 2 1 37 37 H 0.97002 * 120.00052 * 359.97438 * 8 6 4 38 38 H 1.09001 * 110.62546 * 122.96149 * 11 9 8 39 39 H 1.09002 * 110.63091 * 359.93704 * 11 9 8 40 40 H 1.09003 * 110.63022 * 190.31025 * 14 12 11 41 41 H 1.08998 * 110.62894 * 313.33254 * 14 12 11 42 42 H 1.08995 * 110.62993 * 118.48985 * 15 14 12 43 43 H 1.09001 * 110.62491 * 241.51418 * 15 14 12 44 44 H 0.97000 * 119.99921 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.47579 * 59.00943 * 28 27 4 46 46 H 1.09004 * 109.46464 * 179.00952 * 28 27 4 47 47 H 1.09002 * 109.46909 * 299.00209 * 28 27 4 48 48 H 1.08997 * 109.47606 * 48.20346 * 29 27 4 49 49 H 1.09005 * 109.47403 * 168.20449 * 29 27 4 50 50 H 1.09003 * 109.47207 * 288.20261 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5929 -1.7138 1.3036 6 6 3.5399 -0.8492 1.1782 7 8 4.2348 0.1446 1.1971 8 7 4.1091 -2.0679 1.0936 9 6 5.5671 -2.1922 1.0241 10 1 6.0468 -1.3908 1.5859 11 6 6.0486 -2.1904 -0.4477 12 6 6.7322 -3.5818 -0.6071 13 1 6.8352 -3.9520 -1.6272 14 6 8.0566 -3.4782 0.2076 15 6 7.5751 -3.4800 1.6794 16 6 6.0252 -3.5846 1.5534 17 1 5.4958 -3.9507 2.4331 18 7 5.8930 -4.4221 0.3133 19 6 5.2162 -5.5914 0.0904 20 1 4.6590 -6.0540 0.8916 21 6 5.2464 -6.1823 -1.1653 22 7 5.9251 -5.6184 -2.1418 23 14 4.3238 -7.7779 -1.4692 24 1 3.6454 -8.2033 -0.2185 25 1 3.3116 -7.5691 -2.5355 26 1 5.2813 -8.8301 -1.8948 27 7 1.6702 0.0486 2.4444 28 6 1.3454 -0.8435 3.5654 29 6 2.7345 0.9915 2.8132 30 1 -0.3633 0.5899 0.8416 31 1 -0.3634 0.4339 -0.9316 32 1 -0.3634 -1.0237 0.0901 33 1 1.8933 -0.5137 -0.8901 34 1 1.9192 1.8706 -0.9951 35 1 1.4695 2.0296 0.7198 36 1 3.0945 1.4551 0.2753 37 1 3.5533 -2.8628 1.0788 38 1 6.7672 -1.3882 -0.6157 39 1 5.2024 -2.0981 -1.1285 40 1 8.6963 -4.3388 0.0119 41 1 8.5786 -2.5499 -0.0244 42 1 7.9759 -4.3415 2.2134 43 1 7.8582 -2.5526 2.1771 44 1 5.9459 -6.0311 -3.0194 45 1 2.2064 -1.4730 3.7902 46 1 1.0922 -0.2475 4.4423 47 1 0.4964 -1.4716 3.2956 48 1 3.0523 1.5447 1.9294 49 1 2.3589 1.6885 3.5625 50 1 3.5821 0.4412 3.2216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110693076.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:03 Heat of formation + Delta-G solvation = 22.574105 kcal Electronic energy + Delta-G solvation = -28094.806090 eV Core-core repulsion = 24544.761191 eV Total energy + Delta-G solvation = -3550.044899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.58631 -39.07055 -36.65644 -34.14166 -33.88499 -32.57337 -29.21962 -29.12674 -28.38568 -27.94228 -26.87739 -26.42896 -24.25804 -22.81772 -21.57299 -20.35169 -19.93283 -19.44808 -18.63084 -17.06210 -16.85208 -16.22819 -15.70729 -15.28938 -14.85398 -14.52973 -14.06624 -13.99449 -13.71459 -13.50157 -13.37618 -13.25232 -12.87737 -12.45332 -12.21626 -12.04787 -11.91350 -11.82367 -11.60635 -11.51879 -11.21849 -11.15470 -10.97419 -10.95419 -10.88372 -10.68499 -10.54384 -10.39343 -10.33832 -10.11762 -9.93208 -9.54755 -9.28610 -9.22544 -9.01628 -8.47466 -8.17391 -6.99154 -5.79063 -3.18346 2.84021 3.32704 3.37928 3.40862 3.56772 3.96530 4.36462 4.84534 4.93383 5.06737 5.08583 5.15501 5.31459 5.32296 5.41414 5.48964 5.60645 5.66342 5.66556 5.74278 5.78074 5.82698 5.83796 5.87986 6.01769 6.04507 6.05553 6.10232 6.13751 6.20304 6.23217 6.31173 6.39708 6.44525 6.45605 6.57470 6.65749 6.73264 6.78996 6.90907 6.94299 6.98955 7.10593 7.29226 7.42976 7.75002 7.96507 8.12871 8.57231 9.02684 9.66000 10.46966 11.29949 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014413 B = 0.004626 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.169807 B = 6051.361050 C = 6868.295017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 C -0.162 4.162 4 C 0.069 3.931 5 H 0.087 0.913 6 C 0.486 3.514 7 O -0.542 6.542 8 N -0.702 5.702 9 C 0.127 3.873 10 H 0.077 0.923 11 C -0.141 4.141 12 C 0.154 3.846 13 H 0.153 0.847 14 C -0.139 4.139 15 C -0.127 4.127 16 C 0.125 3.875 17 H 0.085 0.915 18 N -0.590 5.590 19 C -0.215 4.215 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.914 3.086 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 N -0.517 5.517 28 C 0.018 3.982 29 C 0.008 3.992 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.401 0.599 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.254 0.746 45 H 0.026 0.974 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.107 0.893 49 H 0.051 0.949 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.650 10.096 7.459 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C -0.218 4.218 4 C -0.042 4.042 5 H 0.105 0.895 6 C 0.271 3.729 7 O -0.420 6.420 8 N -0.351 5.351 9 C 0.021 3.979 10 H 0.095 0.905 11 C -0.181 4.181 12 C 0.047 3.953 13 H 0.170 0.830 14 C -0.178 4.178 15 C -0.167 4.167 16 C 0.016 3.984 17 H 0.103 0.897 18 N -0.311 5.311 19 C -0.343 4.343 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.566 5.566 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 N -0.241 5.241 28 C -0.130 4.130 29 C -0.139 4.139 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.236 0.764 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.125 0.875 49 H 0.070 0.930 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.679 10.787 7.189 14.583 hybrid contribution 0.050 -1.826 0.110 1.830 sum -6.629 8.961 7.299 13.323 Atomic orbital electron populations 1.21728 0.94341 1.01509 1.01685 1.20906 0.96292 0.97095 0.94790 1.22209 1.03771 0.95096 1.00761 1.21944 0.90804 0.98117 0.93383 0.89478 1.21343 0.91144 0.83630 0.76774 1.90571 1.64844 1.36197 1.50413 1.46232 1.08696 1.07880 1.72263 1.22620 0.78910 0.98559 0.97818 0.90451 1.23421 1.00170 0.99549 0.94968 1.23757 0.86625 0.86587 0.98310 0.83017 1.23069 0.99817 0.99422 0.95538 1.22873 0.96824 0.99590 0.97458 1.23157 0.94305 0.89554 0.91346 0.89672 1.46538 1.56316 1.23170 1.05099 1.19037 1.22940 0.96730 0.95617 0.90411 1.24698 1.00771 0.99214 0.95813 1.69468 1.45270 1.39733 1.02153 0.86007 0.78913 0.82890 0.77693 1.20615 1.21780 1.21781 1.62280 1.40804 1.17218 1.03812 1.22533 1.00269 0.96230 0.94015 1.23056 0.91688 0.96237 1.02965 0.91594 0.93125 0.93254 0.91087 0.93797 0.92213 0.89449 0.76400 0.92912 0.92254 0.92620 0.93339 0.92481 0.93089 0.93551 0.95527 0.91259 0.91258 0.87504 0.92983 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.00 37.16 0.33 -1.13 16 2 C -0.07 -0.91 2.72 -90.62 -0.25 -1.16 16 3 C -0.16 -2.08 7.58 37.16 0.28 -1.80 16 4 C 0.07 0.92 2.17 -68.86 -0.15 0.77 16 5 H 0.09 1.08 7.45 -51.93 -0.39 0.69 16 6 C 0.49 7.74 5.99 -10.99 -0.07 7.67 16 7 O -0.54 -9.68 10.73 5.56 0.06 -9.62 16 8 N -0.70 -11.77 5.08 -51.40 -0.26 -12.03 16 9 C 0.13 2.33 2.80 -65.43 -0.18 2.15 16 10 H 0.08 1.44 7.22 -51.93 -0.38 1.06 16 11 C -0.14 -2.84 6.23 -24.24 -0.15 -2.99 16 12 C 0.15 3.45 4.72 -62.80 -0.30 3.16 16 13 H 0.15 3.93 5.52 -51.93 -0.29 3.65 16 14 C -0.14 -2.73 6.44 -24.24 -0.16 -2.89 16 15 C -0.13 -2.30 6.44 -24.23 -0.16 -2.46 16 16 C 0.13 2.40 5.06 -62.80 -0.32 2.08 16 17 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 18 N -0.59 -13.73 2.99 -145.82 -0.44 -14.16 16 19 C -0.22 -5.54 10.59 -15.06 -0.16 -5.69 16 20 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -25.43 10.46 55.49 0.58 -24.85 16 23 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 N -0.52 -6.33 4.15 -244.59 -1.02 -7.34 16 28 C 0.02 0.19 9.36 60.06 0.56 0.75 16 29 C 0.01 0.10 7.45 60.06 0.45 0.55 16 30 H 0.07 0.71 7.84 -51.93 -0.41 0.31 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.73 7.31 -51.93 -0.38 0.35 16 36 H 0.09 1.32 4.20 -51.93 -0.22 1.10 16 37 H 0.40 6.66 8.50 -40.82 -0.35 6.32 16 38 H 0.05 1.00 7.82 -51.93 -0.41 0.60 16 39 H 0.06 1.30 7.98 -51.93 -0.41 0.88 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16 44 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 45 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 47 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 48 H 0.11 1.53 3.58 -51.93 -0.19 1.34 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.03 0.43 6.85 -51.93 -0.36 0.08 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -27.66 371.89 -9.61 -37.28 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.77 Total: 10.33 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.35 Total: -1.32 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -1.13 Total: -58.39 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.06 Total: -9.62 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.66 -9.61 -37.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110693076.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.850 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds