Wall clock time and date at job start Tue Mar 31 2020 04:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 110.59810 * 2 1 4 4 C 1.54934 * 110.66895 * 236.98687 * 2 1 3 5 5 C 1.54587 * 102.92561 * 203.99006 * 4 2 1 6 6 C 1.53994 * 105.13985 * 21.95824 * 5 4 2 7 7 H 1.09002 * 109.91852 * 241.67725 * 6 5 4 8 8 C 1.52999 * 109.91866 * 120.58172 * 6 5 4 9 9 N 1.47905 * 107.05879 * 1.22610 * 6 5 4 10 10 C 1.46898 * 111.00200 * 214.15785 * 9 6 5 11 11 C 1.50700 * 109.47234 * 63.22057 * 10 9 6 12 12 O 1.21280 * 120.00041 * 353.77025 * 11 10 9 13 13 N 1.34774 * 120.00138 * 173.76395 * 11 10 9 14 14 C 1.46494 * 120.00302 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47362 * 179.97438 * 14 13 11 16 16 N 1.46504 * 109.47320 * 179.97438 * 15 14 13 17 17 C 1.36938 * 120.00156 * 270.00375 * 16 15 14 18 18 H 1.07995 * 119.99694 * 140.65849 * 17 16 15 19 19 C 1.38806 * 120.00033 * 320.66069 * 17 16 15 20 20 N 1.31624 * 120.00279 * 339.43323 * 19 17 16 21 21 Si 1.86798 * 119.99983 * 159.43652 * 19 17 16 22 22 H 1.48500 * 109.47200 * 89.99704 * 21 19 17 23 23 H 1.48498 * 109.46917 * 209.99722 * 21 19 17 24 24 H 1.48497 * 109.47097 * 329.99625 * 21 19 17 25 25 C 1.46504 * 119.99679 * 90.00303 * 16 15 14 26 26 C 1.52998 * 117.50005 * 183.38218 * 25 16 15 27 27 C 1.52998 * 117.49813 * 114.75839 * 25 16 15 28 28 H 1.08998 * 109.47783 * 179.57955 * 1 2 3 29 29 H 1.09003 * 109.47283 * 299.58648 * 1 2 3 30 30 H 1.09010 * 109.46518 * 59.58087 * 1 2 3 31 31 H 1.09000 * 110.72458 * 85.63022 * 4 2 1 32 32 H 1.09004 * 110.87739 * 322.42230 * 4 2 1 33 33 H 1.09005 * 110.30851 * 263.04547 * 5 4 2 34 34 H 1.09000 * 110.39501 * 140.91704 * 5 4 2 35 35 H 1.08996 * 109.47073 * 61.45265 * 8 6 5 36 36 H 1.08999 * 109.46737 * 301.45465 * 8 6 5 37 37 H 1.08997 * 109.47216 * 181.45825 * 8 6 5 38 38 H 1.09001 * 109.47190 * 183.22423 * 10 9 6 39 39 H 1.09000 * 109.46735 * 303.22547 * 10 9 6 40 40 H 0.97007 * 119.99703 * 0.02562 * 13 11 10 41 41 H 1.08994 * 109.47439 * 300.00497 * 14 13 11 42 42 H 1.09011 * 109.47103 * 60.00530 * 14 13 11 43 43 H 1.09002 * 109.47481 * 300.00446 * 15 14 13 44 44 H 1.09003 * 109.47114 * 60.00502 * 15 14 13 45 45 H 0.96988 * 120.00239 * 185.04078 * 20 19 17 46 46 H 1.09002 * 115.54860 * 329.09077 * 25 16 15 47 47 H 1.08999 * 117.49571 * 0.02562 * 26 25 16 48 48 H 1.08996 * 117.49983 * 145.02036 * 26 25 16 49 49 H 1.09002 * 117.50211 * 214.98078 * 27 25 16 50 50 H 1.08998 * 117.49759 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0202 0.0000 4 6 2.0769 -0.7898 -1.2156 5 6 3.4869 -1.2150 -0.7457 6 6 3.4316 -1.1609 0.7923 7 1 4.1491 -0.4295 1.1642 8 6 3.7453 -2.5408 1.3740 9 7 2.0576 -0.7583 1.1632 10 6 2.0612 0.0720 2.3750 11 6 2.8127 1.3502 2.1059 12 8 3.3931 1.5020 1.0519 13 7 2.8395 2.3248 3.0365 14 6 3.5705 3.5672 2.7751 15 6 3.4421 4.4981 3.9825 16 7 4.1735 5.7403 3.7214 17 6 5.4935 5.8441 4.0709 18 1 6.1858 6.3567 3.4196 19 6 5.9416 5.2904 5.2623 20 7 5.0879 5.0331 6.2306 21 14 7.7561 4.9104 5.4914 22 1 8.4401 6.0936 6.0724 23 1 7.9072 3.7518 6.4079 24 1 8.3633 4.5838 4.1763 25 6 3.4928 6.8715 3.0863 26 6 4.3302 8.1118 2.7682 27 6 3.3175 8.1459 3.9145 28 1 -0.3634 -1.0276 -0.0075 29 1 -0.3634 0.5074 0.8937 30 1 -0.3633 0.5204 -0.8863 31 1 2.1403 -0.1490 -2.0950 32 1 1.4588 -1.6639 -1.4209 33 1 4.2369 -0.5193 -1.1220 34 1 3.7095 -2.2281 -1.0808 35 1 4.7527 -2.8376 1.0823 36 1 3.0278 -3.2674 0.9929 37 1 3.6789 -2.5005 2.4612 38 1 1.0350 0.3064 2.6580 39 1 2.5467 -0.4710 3.1859 40 1 2.3755 2.2033 3.8796 41 1 4.6222 3.3403 2.6010 42 1 3.1535 4.0557 1.8943 43 1 2.3902 4.7251 4.1562 44 1 3.8587 4.0100 4.8636 45 1 5.4093 4.7150 7.0886 46 1 2.6957 6.6099 2.3903 47 1 5.3877 8.0860 3.0311 48 1 4.0843 8.6665 1.8627 49 1 2.4052 8.7231 3.7632 50 1 3.7082 8.1426 4.9321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691237101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:21 Heat of formation + Delta-G solvation = 16.646176 kcal Electronic energy + Delta-G solvation = -26760.934089 eV Core-core repulsion = 23210.632136 eV Total energy + Delta-G solvation = -3550.301953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.50164 -38.09838 -37.06068 -34.75029 -33.23987 -32.60318 -32.37869 -30.85728 -28.53369 -27.93098 -25.79964 -24.22651 -23.86623 -21.86625 -21.30635 -20.66681 -20.44792 -19.91796 -19.57598 -16.91593 -16.40425 -16.05178 -15.56608 -15.38830 -15.22481 -14.97228 -14.60239 -14.30507 -14.04734 -13.58035 -13.42629 -13.14315 -12.82371 -12.70525 -12.60292 -12.16006 -12.02024 -11.95099 -11.79886 -11.57941 -11.35160 -11.05328 -10.99742 -10.79670 -10.76038 -10.72339 -10.60973 -10.47041 -10.27215 -10.17865 -10.11743 -9.86614 -9.64434 -9.32229 -8.61767 -8.52335 -8.18024 -6.56004 -5.94855 -3.51564 2.83236 3.27267 3.35755 3.40155 3.55341 3.88642 4.36460 4.61638 4.73137 4.90263 4.95500 5.11333 5.19255 5.22296 5.25059 5.30001 5.43012 5.46267 5.47471 5.59602 5.63002 5.71584 5.75878 5.88068 5.91086 5.95125 6.00393 6.05419 6.06234 6.11400 6.15482 6.17840 6.25063 6.34216 6.36606 6.46689 6.48267 6.59621 6.81493 6.93578 6.93857 6.99629 7.04396 7.21119 7.43379 7.74443 7.85063 8.41873 8.49597 9.05051 9.66140 10.24523 11.07247 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.003486 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.409933 B = 8030.354995 C = 9005.895388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.040 3.960 3 H 0.091 0.909 4 C -0.113 4.113 5 C -0.119 4.119 6 C 0.057 3.943 7 H 0.072 0.928 8 C -0.135 4.135 9 N -0.488 5.488 10 C 0.022 3.978 11 C 0.475 3.525 12 O -0.543 6.543 13 N -0.718 5.718 14 C 0.098 3.902 15 C 0.143 3.857 16 N -0.547 5.547 17 C -0.266 4.266 18 H 0.065 0.935 19 C 0.020 3.980 20 N -0.887 5.887 21 Si 0.898 3.102 22 H -0.284 1.284 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.119 3.881 26 C -0.194 4.194 27 C -0.219 4.219 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.398 0.602 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.031 0.969 44 H 0.099 0.901 45 H 0.257 0.743 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.407 -11.351 -8.399 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 H 0.108 0.892 4 C -0.151 4.151 5 C -0.157 4.157 6 C -0.051 4.051 7 H 0.090 0.910 8 C -0.193 4.193 9 N -0.211 5.211 10 C -0.110 4.110 11 C 0.260 3.740 12 O -0.422 6.422 13 N -0.368 5.368 14 C -0.028 4.028 15 C 0.016 3.984 16 N -0.264 5.264 17 C -0.396 4.396 18 H 0.082 0.918 19 C -0.181 4.181 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.210 1.210 23 H -0.214 1.214 24 H -0.201 1.201 25 C 0.010 3.990 26 C -0.233 4.233 27 C -0.260 4.260 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.231 0.769 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.116 0.884 45 H 0.068 0.932 46 H 0.103 0.897 47 H 0.116 0.884 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.274 -11.849 -8.868 16.956 hybrid contribution 1.263 0.700 0.660 1.588 sum -7.010 -11.149 -8.208 15.518 Atomic orbital electron populations 1.21698 0.94583 1.01848 1.01187 1.23167 0.94890 0.99049 0.89638 0.89151 1.22409 0.96060 0.99467 0.97136 1.22324 0.97513 1.01116 0.94716 1.22429 0.90366 0.96966 0.95328 0.90983 1.21790 1.00583 0.96315 1.00623 1.65016 1.18997 1.34539 1.02530 1.22426 1.01532 0.90974 0.96069 1.21847 0.81594 0.86134 0.84441 1.90628 1.45511 1.80843 1.25221 1.46282 1.53465 1.17860 1.19227 1.22323 0.96139 0.83352 1.00951 1.21009 0.94607 0.86806 0.95978 1.43170 1.08384 1.06456 1.68392 1.18991 0.83569 1.35648 1.01356 0.91783 1.25273 0.97628 1.00403 0.94846 1.69903 1.33449 1.47121 1.02351 0.86376 0.85079 0.77967 0.77938 1.21031 1.21352 1.20075 1.21227 0.96745 0.83492 0.97501 1.23015 0.98624 1.03089 0.98522 1.23335 0.99365 1.05961 0.97314 0.92276 0.93064 0.92526 0.91579 0.91459 0.91498 0.91654 0.92701 0.92348 0.93001 0.88007 0.87917 0.76886 0.91740 0.93269 0.95011 0.88380 0.93249 0.89655 0.88427 0.90777 0.91262 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.49 37.16 0.35 -1.06 16 2 C 0.04 0.50 2.50 -65.78 -0.16 0.34 16 3 H 0.09 1.40 5.06 -51.93 -0.26 1.14 16 4 C -0.11 -1.28 6.49 -24.88 -0.16 -1.44 16 5 C -0.12 -1.41 6.57 -25.38 -0.17 -1.58 16 6 C 0.06 0.73 2.38 -66.64 -0.16 0.57 16 7 H 0.07 1.12 5.79 -51.93 -0.30 0.82 16 8 C -0.14 -1.45 9.32 37.16 0.35 -1.10 16 9 N -0.49 -6.02 4.87 -216.22 -1.05 -7.07 16 10 C 0.02 0.26 5.84 -4.98 -0.03 0.24 16 11 C 0.47 7.29 6.73 -10.99 -0.07 7.21 16 12 O -0.54 -10.05 11.79 5.56 0.07 -9.98 16 13 N -0.72 -11.19 5.56 -60.30 -0.33 -11.52 16 14 C 0.10 1.90 6.00 -4.05 -0.02 1.88 16 15 C 0.14 3.08 5.45 -4.04 -0.02 3.05 16 16 N -0.55 -13.01 2.75 -165.66 -0.46 -13.47 16 17 C -0.27 -6.96 8.47 -15.06 -0.13 -7.09 16 18 H 0.06 1.70 6.74 -52.49 -0.35 1.35 16 19 C 0.02 0.52 4.96 -17.43 -0.09 0.43 16 20 N -0.89 -24.11 11.54 55.49 0.64 -23.47 16 21 Si 0.90 20.99 29.60 -169.99 -5.03 15.95 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.12 2.51 6.56 -67.93 -0.45 2.07 16 26 C -0.19 -3.82 9.80 -26.73 -0.26 -4.08 16 27 C -0.22 -4.41 10.35 -26.73 -0.28 -4.69 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.52 7.62 -51.93 -0.40 0.13 16 30 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.67 7.69 -51.93 -0.40 0.27 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 1.01 7.62 -51.93 -0.40 0.61 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.40 5.21 8.47 -40.82 -0.35 4.86 16 41 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 43 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 44 H 0.10 2.37 5.62 -51.93 -0.29 2.08 16 45 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 46 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 47 H 0.10 2.09 6.46 -51.93 -0.34 1.76 16 48 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 387.84 15.07 5.84 5.84 Total: -1.00 -28.82 387.84 -10.60 -39.42 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -8.97 Total: 9.55 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.30 Total: -5.25 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -1.20 Total: -55.53 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.82 -10.60 -39.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691237101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.063 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds