Wall clock time and date at job start Tue Mar 31 2020 04:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 110.59810 * 2 1 4 4 C 1.54934 * 110.66895 * 236.98687 * 2 1 3 5 5 C 1.54587 * 102.92561 * 203.99006 * 4 2 1 6 6 C 1.53994 * 105.13985 * 21.95824 * 5 4 2 7 7 H 1.09002 * 109.91852 * 241.67725 * 6 5 4 8 8 C 1.52999 * 109.91866 * 120.58172 * 6 5 4 9 9 N 1.47905 * 107.05879 * 1.22610 * 6 5 4 10 10 C 1.46898 * 111.00200 * 214.15785 * 9 6 5 11 11 C 1.50700 * 109.47234 * 63.22057 * 10 9 6 12 12 O 1.21280 * 120.00041 * 353.77025 * 11 10 9 13 13 N 1.34774 * 120.00138 * 173.76395 * 11 10 9 14 14 C 1.46494 * 120.00302 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47362 * 179.97438 * 14 13 11 16 16 N 1.46504 * 109.47320 * 179.97438 * 15 14 13 17 17 C 1.36938 * 120.00156 * 270.00375 * 16 15 14 18 18 H 1.07995 * 119.99694 * 140.65849 * 17 16 15 19 19 C 1.38806 * 120.00033 * 320.66069 * 17 16 15 20 20 N 1.31624 * 120.00279 * 339.43323 * 19 17 16 21 21 Si 1.86798 * 119.99983 * 159.43652 * 19 17 16 22 22 H 1.48500 * 109.47200 * 89.99704 * 21 19 17 23 23 H 1.48498 * 109.46917 * 209.99722 * 21 19 17 24 24 H 1.48497 * 109.47097 * 329.99625 * 21 19 17 25 25 C 1.46504 * 119.99679 * 90.00303 * 16 15 14 26 26 C 1.52998 * 117.50005 * 183.38218 * 25 16 15 27 27 C 1.52998 * 117.49813 * 114.75839 * 25 16 15 28 28 H 1.08998 * 109.47783 * 179.57955 * 1 2 3 29 29 H 1.09003 * 109.47283 * 299.58648 * 1 2 3 30 30 H 1.09010 * 109.46518 * 59.58087 * 1 2 3 31 31 H 1.09000 * 110.72458 * 85.63022 * 4 2 1 32 32 H 1.09004 * 110.87739 * 322.42230 * 4 2 1 33 33 H 1.09005 * 110.30851 * 263.04547 * 5 4 2 34 34 H 1.09000 * 110.39501 * 140.91704 * 5 4 2 35 35 H 1.08996 * 109.47073 * 61.45265 * 8 6 5 36 36 H 1.08999 * 109.46737 * 301.45465 * 8 6 5 37 37 H 1.08997 * 109.47216 * 181.45825 * 8 6 5 38 38 H 1.09001 * 109.47190 * 183.22423 * 10 9 6 39 39 H 1.09000 * 109.46735 * 303.22547 * 10 9 6 40 40 H 0.97007 * 119.99703 * 0.02562 * 13 11 10 41 41 H 1.08994 * 109.47439 * 300.00497 * 14 13 11 42 42 H 1.09011 * 109.47103 * 60.00530 * 14 13 11 43 43 H 1.09002 * 109.47481 * 300.00446 * 15 14 13 44 44 H 1.09003 * 109.47114 * 60.00502 * 15 14 13 45 45 H 0.96988 * 120.00239 * 185.04078 * 20 19 17 46 46 H 1.09002 * 115.54860 * 329.09077 * 25 16 15 47 47 H 1.08999 * 117.49571 * 0.02562 * 26 25 16 48 48 H 1.08996 * 117.49983 * 145.02036 * 26 25 16 49 49 H 1.09002 * 117.50211 * 214.98078 * 27 25 16 50 50 H 1.08998 * 117.49759 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0202 0.0000 4 6 2.0769 -0.7898 -1.2156 5 6 3.4869 -1.2150 -0.7457 6 6 3.4316 -1.1609 0.7923 7 1 4.1491 -0.4295 1.1642 8 6 3.7453 -2.5408 1.3740 9 7 2.0576 -0.7583 1.1632 10 6 2.0612 0.0720 2.3750 11 6 2.8127 1.3502 2.1059 12 8 3.3931 1.5020 1.0519 13 7 2.8395 2.3248 3.0365 14 6 3.5705 3.5672 2.7751 15 6 3.4421 4.4981 3.9825 16 7 4.1735 5.7403 3.7214 17 6 5.4935 5.8441 4.0709 18 1 6.1858 6.3567 3.4196 19 6 5.9416 5.2904 5.2623 20 7 5.0879 5.0331 6.2306 21 14 7.7561 4.9104 5.4914 22 1 8.4401 6.0936 6.0724 23 1 7.9072 3.7518 6.4079 24 1 8.3633 4.5838 4.1763 25 6 3.4928 6.8715 3.0863 26 6 4.3302 8.1118 2.7682 27 6 3.3175 8.1459 3.9145 28 1 -0.3634 -1.0276 -0.0075 29 1 -0.3634 0.5074 0.8937 30 1 -0.3633 0.5204 -0.8863 31 1 2.1403 -0.1490 -2.0950 32 1 1.4588 -1.6639 -1.4209 33 1 4.2369 -0.5193 -1.1220 34 1 3.7095 -2.2281 -1.0808 35 1 4.7527 -2.8376 1.0823 36 1 3.0278 -3.2674 0.9929 37 1 3.6789 -2.5005 2.4612 38 1 1.0350 0.3064 2.6580 39 1 2.5467 -0.4710 3.1859 40 1 2.3755 2.2033 3.8796 41 1 4.6222 3.3403 2.6010 42 1 3.1535 4.0557 1.8943 43 1 2.3902 4.7251 4.1562 44 1 3.8587 4.0100 4.8636 45 1 5.4093 4.7150 7.0886 46 1 2.6957 6.6099 2.3903 47 1 5.3877 8.0860 3.0311 48 1 4.0843 8.6665 1.8627 49 1 2.4052 8.7231 3.7632 50 1 3.7082 8.1426 4.9321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691237101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:20 Heat of formation + Delta-G solvation = -1.084211 kcal Electronic energy + Delta-G solvation = -26761.702937 eV Core-core repulsion = 23210.632136 eV Total energy + Delta-G solvation = -3551.070800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63874 -39.33286 -38.69905 -36.26060 -34.97492 -33.53864 -33.42940 -32.62940 -29.76712 -29.16524 -27.13411 -25.93795 -24.75394 -23.47756 -22.90455 -21.88252 -21.60456 -21.40959 -20.81735 -18.42194 -17.76616 -17.42056 -17.24380 -16.78115 -16.56272 -16.23957 -15.93325 -15.76839 -15.37999 -14.87054 -14.69743 -14.50112 -14.05486 -13.95632 -13.78303 -13.61472 -13.30649 -13.02795 -12.92228 -12.88591 -12.71125 -12.66682 -12.52796 -12.27885 -12.17692 -11.95436 -11.90164 -11.73328 -11.62107 -11.55444 -11.42854 -11.36645 -11.21156 -10.94027 -10.55797 -9.97991 -9.28572 -8.47173 -7.93055 -5.53180 1.38646 1.43020 1.51351 1.60553 2.22223 2.45949 2.92386 3.11002 3.37245 3.54169 3.67903 3.80522 3.88784 4.16257 4.27089 4.28334 4.31269 4.35557 4.39728 4.50266 4.50874 4.54382 4.56429 4.59199 4.71457 4.76024 4.79363 4.88039 4.88859 4.93004 4.99204 5.02387 5.04233 5.18688 5.20157 5.22317 5.28960 5.31847 5.41074 5.45650 5.49307 5.54342 5.63130 5.72474 5.95254 6.00101 6.43165 6.61264 7.09779 7.26828 7.77006 8.29443 9.05146 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015522 B = 0.003486 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.409933 B = 8030.354995 C = 9005.895388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.036 3.964 3 H 0.058 0.942 4 C -0.110 4.110 5 C -0.120 4.120 6 C 0.054 3.946 7 H 0.038 0.962 8 C -0.128 4.128 9 N -0.480 5.480 10 C 0.029 3.971 11 C 0.473 3.527 12 O -0.575 6.575 13 N -0.712 5.712 14 C 0.124 3.876 15 C 0.152 3.848 16 N -0.566 5.566 17 C -0.272 4.272 18 H 0.053 0.947 19 C -0.021 4.021 20 N -0.910 5.910 21 Si 0.950 3.050 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.099 3.901 26 C -0.184 4.184 27 C -0.210 4.210 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.412 0.588 41 H 0.027 0.973 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.256 0.744 46 H 0.109 0.891 47 H 0.073 0.927 48 H 0.109 0.891 49 H 0.103 0.897 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.022 -12.436 -9.024 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 H 0.076 0.924 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.055 4.055 7 H 0.056 0.944 8 C -0.186 4.186 9 N -0.203 5.203 10 C -0.103 4.103 11 C 0.260 3.740 12 O -0.456 6.456 13 N -0.365 5.365 14 C -0.003 4.003 15 C 0.025 3.975 16 N -0.283 5.283 17 C -0.402 4.402 18 H 0.071 0.929 19 C -0.220 4.220 20 N -0.553 5.553 21 Si 0.778 3.222 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.009 4.009 26 C -0.222 4.222 27 C -0.251 4.251 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.248 0.752 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.127 0.873 47 H 0.092 0.908 48 H 0.127 0.873 49 H 0.121 0.879 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.909 -12.939 -9.488 18.859 hybrid contribution 1.752 1.075 0.790 2.202 sum -8.157 -11.864 -8.698 16.821 Atomic orbital electron populations 1.21652 0.92674 1.02630 1.01702 1.23152 0.96346 0.97403 0.90269 0.92438 1.22430 0.95737 0.99946 0.96694 1.22334 0.97496 1.01683 0.94270 1.22440 0.89856 0.97267 0.95916 0.94394 1.21734 1.01232 0.95010 1.00642 1.65112 1.18431 1.34080 1.02644 1.22575 1.02499 0.88822 0.96426 1.22583 0.81041 0.86825 0.83539 1.90631 1.46831 1.81503 1.26680 1.46139 1.53308 1.16825 1.20202 1.21728 0.94365 0.84553 0.99684 1.20864 0.94744 0.86360 0.95552 1.43371 1.08106 1.08111 1.68756 1.19085 0.84872 1.35171 1.01061 0.92910 1.25801 1.00605 1.00806 0.94777 1.69998 1.34570 1.48176 1.02508 0.85566 0.81575 0.77646 0.77462 1.20731 1.21265 1.20367 1.21521 0.97896 0.83183 0.98296 1.23022 0.97150 1.02407 0.99642 1.23232 1.00666 1.05705 0.95468 0.91247 0.92838 0.91827 0.91587 0.89707 0.93550 0.89746 0.92116 0.91305 0.92792 0.85353 0.86233 0.75220 0.95441 0.93867 0.93597 0.90890 0.93498 0.87323 0.90806 0.87289 0.87920 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.49 71.98 0.68 -1.70 16 2 C 0.04 0.86 2.50 45.26 0.11 0.97 16 3 H 0.06 1.79 5.06 -2.39 -0.01 1.78 16 4 C -0.11 -2.35 6.49 31.80 0.21 -2.15 16 5 C -0.12 -2.78 6.57 31.47 0.21 -2.57 16 6 C 0.05 1.33 2.38 45.06 0.11 1.44 16 7 H 0.04 1.21 5.79 -2.39 -0.01 1.20 16 8 C -0.13 -2.52 9.32 71.98 0.67 -1.85 16 9 N -0.48 -11.06 4.87 -837.98 -4.08 -15.14 16 10 C 0.03 0.63 5.84 85.56 0.50 1.13 16 11 C 0.47 14.44 6.73 87.66 0.59 15.03 16 12 O -0.58 -21.90 11.79 -3.03 -0.04 -21.94 16 13 N -0.71 -22.12 5.56 -463.07 -2.57 -24.69 16 14 C 0.12 4.90 6.00 86.38 0.52 5.42 16 15 C 0.15 6.59 5.45 86.38 0.47 7.06 16 16 N -0.57 -27.24 2.75 -678.03 -1.86 -29.10 16 17 C -0.27 -14.53 8.47 84.03 0.71 -13.82 16 18 H 0.05 2.89 6.74 -2.91 -0.02 2.87 16 19 C -0.02 -1.14 4.96 84.86 0.42 -0.72 16 20 N -0.91 -50.40 11.54 21.65 0.25 -50.15 16 21 Si 0.95 43.98 29.60 68.60 2.03 46.01 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 C 0.10 4.08 6.56 44.99 0.30 4.38 16 26 C -0.18 -7.03 9.80 30.59 0.30 -6.73 16 27 C -0.21 -8.23 10.35 30.59 0.32 -7.91 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 0.95 7.62 -2.39 -0.02 0.94 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.52 8.06 -2.38 -0.02 1.50 16 33 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.08 1.60 7.69 -2.39 -0.02 1.58 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.13 2.17 7.62 -2.39 -0.02 2.15 16 39 H 0.12 2.26 8.14 -2.39 -0.02 2.25 16 40 H 0.41 10.42 8.47 -92.70 -0.79 9.63 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.05 1.83 8.07 -2.39 -0.02 1.82 16 44 H 0.07 3.60 5.62 -2.39 -0.01 3.59 16 45 H 0.26 13.70 8.32 -92.72 -0.77 12.93 16 46 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 47 H 0.07 3.18 6.46 -2.39 -0.02 3.17 16 48 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 49 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 50 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -64.00 387.84 -0.03 -64.03 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.12 Total: 32.98 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 6.11 Total: -2.01 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -8.26 Total: -119.08 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.04 Total: -21.94 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -64.00 -0.03 -64.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691237101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.946 kcal (2) G-P(sol) polarization free energy of solvation -63.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds