Wall clock time and date at job start Tue Mar 31 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.80995 * 109.47127 * 2 1 4 4 C 1.76198 * 99.99911 * 180.02562 * 3 2 1 5 5 N 1.32913 * 120.17686 * 0.02562 * 4 3 2 6 6 C 1.31996 * 119.97729 * 179.97438 * 5 4 3 7 7 C 1.38835 * 120.33957 * 0.02562 * 6 5 4 8 8 N 1.31727 * 120.35228 * 359.97438 * 7 6 5 9 9 C 1.33012 * 120.01950 * 359.97438 * 8 7 6 10 10 C 1.47700 * 120.16860 * 179.97438 * 9 8 7 11 11 O 1.21574 * 120.00232 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99673 * 0.04235 * 10 9 8 13 13 C 1.46498 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.46802 * 180.02562 * 13 12 10 15 15 O 1.21288 * 120.00563 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99964 * 180.02562 * 14 13 12 17 17 C 1.37092 * 120.00152 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00030 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00093 * 179.97438 * 17 16 14 20 20 N 1.31408 * 119.99947 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00126 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46844 * 89.99944 * 21 19 17 23 23 H 1.48498 * 109.47339 * 210.00159 * 21 19 17 24 24 H 1.48503 * 109.46907 * 330.00403 * 21 19 17 25 25 H 1.09000 * 109.47662 * 59.99183 * 1 2 3 26 26 H 1.09002 * 109.47370 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47185 * 299.99497 * 1 2 3 28 28 H 1.08997 * 109.46472 * 240.00434 * 2 1 3 29 29 H 1.08996 * 109.46954 * 120.00894 * 2 1 3 30 30 H 1.08000 * 119.83458 * 180.02562 * 6 5 4 31 31 H 1.07994 * 119.82657 * 179.70082 * 7 6 5 32 32 H 0.96997 * 120.00014 * 0.02562 * 12 10 9 33 33 H 1.08997 * 109.47036 * 299.99923 * 13 12 10 34 34 H 1.08997 * 109.47075 * 59.99892 * 13 12 10 35 35 H 0.97000 * 119.99995 * 359.97438 * 16 14 13 36 36 H 0.96997 * 120.00162 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7064 0.0000 4 6 3.8713 1.4165 -0.0008 5 7 4.3412 0.1732 -0.0017 6 6 5.6439 -0.0395 -0.0028 7 6 6.5291 1.0300 -0.0024 8 7 6.0778 2.2676 -0.0016 9 6 4.7678 2.4982 -0.0015 10 6 4.2582 3.8845 0.0001 11 8 3.0603 4.0918 0.0006 12 7 5.1213 4.9197 0.0006 13 6 4.6158 6.2947 0.0027 14 6 5.7760 7.2564 0.0022 15 8 6.9133 6.8348 0.0007 16 7 5.5500 8.5851 0.0044 17 6 6.6055 9.4600 0.0045 18 1 7.6181 9.0845 0.0023 19 6 6.3725 10.8298 0.0062 20 7 5.1404 11.2867 0.0083 21 14 7.8107 12.0220 0.0056 22 1 8.1899 12.3393 -1.3947 23 1 7.4190 13.2706 0.7075 24 1 8.9665 11.4035 0.7034 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 6.0232 -1.0507 -0.0039 31 1 7.5933 0.8465 0.0015 32 1 6.0770 4.7543 -0.0005 33 1 4.0074 6.4595 -0.8865 34 1 4.0089 6.4574 0.8934 35 1 4.6405 8.9224 0.0060 36 1 4.9777 12.2429 0.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344120566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:55 Heat of formation + Delta-G solvation = -25.271104 kcal Electronic energy + Delta-G solvation = -22054.599821 eV Core-core repulsion = 18472.307875 eV Total energy + Delta-G solvation = -3582.291946 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 310.089 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31791 -39.37374 -38.08958 -34.88550 -34.40368 -33.67836 -32.92133 -31.98737 -31.36422 -28.03922 -25.70165 -25.11137 -24.37126 -23.38476 -20.85871 -19.66324 -18.52302 -18.11626 -18.02927 -17.60615 -15.99767 -15.86489 -15.71627 -15.22719 -15.09709 -15.05783 -14.69085 -14.60517 -14.20697 -13.73095 -13.69897 -13.27850 -12.67114 -12.21375 -12.10074 -12.02186 -11.92493 -11.88973 -11.62926 -11.49987 -11.11987 -11.02352 -10.45007 -10.30581 -10.18662 -9.77766 -9.62925 -9.31304 -8.91915 -8.62775 -8.09458 -7.74958 -6.50763 -3.92600 0.09313 0.68109 1.26134 2.08745 2.64475 3.05578 3.12523 3.23081 3.28963 3.51927 3.74630 3.84545 3.98337 4.10406 4.25289 4.74139 4.74394 4.78107 4.83956 4.86133 5.02167 5.17537 5.17823 5.55272 5.56933 5.81411 5.83012 5.89364 5.92605 6.05769 6.56241 6.73739 7.24863 7.47042 7.72218 7.92171 8.25134 8.46113 9.05460 9.39632 9.87760 10.66176 Molecular weight = 310.09amu Principal moments of inertia in cm(-1) A = 0.025508 B = 0.002737 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.427997 B =10228.841548 C =11300.521575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.162 4.162 3 S 0.074 5.926 4 C 0.096 3.904 5 N -0.452 5.452 6 C 0.092 3.908 7 C 0.035 3.965 8 N -0.387 5.387 9 C 0.043 3.957 10 C 0.565 3.435 11 O -0.514 6.514 12 N -0.680 5.680 13 C 0.106 3.894 14 C 0.428 3.572 15 O -0.593 6.593 16 N -0.549 5.549 17 C -0.304 4.304 18 H 0.106 0.894 19 C 0.026 3.974 20 N -0.895 5.895 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.269 1.269 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.178 0.822 31 H 0.179 0.821 32 H 0.422 0.578 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.396 0.604 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.194 -22.427 -0.004 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.310 4.310 3 S 0.317 5.683 4 C -0.154 4.154 5 N -0.170 5.170 6 C -0.074 4.074 7 C -0.133 4.133 8 N -0.104 5.104 9 C -0.107 4.107 10 C 0.348 3.652 11 O -0.392 6.392 12 N -0.334 5.334 13 C -0.021 4.021 14 C 0.213 3.787 15 O -0.480 6.480 16 N -0.184 5.184 17 C -0.434 4.434 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.535 5.535 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.195 0.805 31 H 0.196 0.804 32 H 0.262 0.738 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.230 0.770 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.215 -21.233 0.003 22.124 hybrid contribution 1.580 -0.534 -0.013 1.668 sum -4.635 -21.767 -0.010 22.255 Atomic orbital electron populations 1.21497 0.92380 1.02648 1.03044 1.23845 1.00020 1.00901 1.06256 1.87368 0.89334 1.04864 1.86695 1.24475 1.02225 0.91588 0.97117 1.68979 1.15803 1.19502 1.12739 1.24058 0.89203 1.01596 0.92548 1.23788 1.02358 0.87943 0.99163 1.68392 1.13128 1.23833 1.05082 1.21745 0.89761 0.94856 1.04304 1.17424 0.86124 0.83295 0.78319 1.90725 1.14275 1.83352 1.50856 1.45505 1.11765 1.04630 1.71479 1.21067 0.96496 0.80853 1.03670 1.19692 0.89563 0.83679 0.85752 1.90518 1.23004 1.77349 1.57091 1.41782 1.10133 1.03757 1.62701 1.19732 0.89079 0.86368 1.48187 0.87655 1.25322 0.97783 0.97806 0.96809 1.69611 1.19227 1.15303 1.49367 0.85813 0.80609 0.79126 0.78489 1.20265 1.20803 1.19307 0.91748 0.91200 0.91743 0.89378 0.89379 0.80509 0.80390 0.73836 0.89333 0.89326 0.77012 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.92 37.16 0.37 -0.67 16 2 C -0.16 -1.53 5.57 37.16 0.21 -1.32 16 3 S 0.07 0.96 18.97 -107.50 -2.04 -1.08 16 4 C 0.10 1.31 7.01 -16.23 -0.11 1.20 16 5 N -0.45 -5.16 9.32 -11.48 -0.11 -5.27 16 6 C 0.09 0.79 11.22 -17.26 -0.19 0.59 16 7 C 0.03 0.33 11.21 -17.38 -0.19 0.13 16 8 N -0.39 -5.29 9.70 -9.48 -0.09 -5.38 16 9 C 0.04 0.65 6.77 -82.64 -0.56 0.09 16 10 C 0.57 9.63 7.79 -12.39 -0.10 9.54 16 11 O -0.51 -9.29 13.77 5.30 0.07 -9.22 16 12 N -0.68 -12.17 5.52 -62.48 -0.34 -12.52 16 13 C 0.11 1.98 6.15 -5.20 -0.03 1.95 16 14 C 0.43 9.90 7.85 -10.98 -0.09 9.81 16 15 O -0.59 -15.47 15.24 5.55 0.08 -15.39 16 16 N -0.55 -13.62 5.29 -10.97 -0.06 -13.68 16 17 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 18 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -23.89 13.05 55.50 0.72 -23.16 16 21 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.82 8.13 -51.92 -0.42 0.40 16 29 H 0.09 0.82 8.13 -51.92 -0.42 0.40 16 30 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.42 7.83 6.78 -40.82 -0.28 7.55 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -32.03 333.63 -6.61 -38.64 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -3.91 Total: 13.01 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -0.94 Total: 13.46 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.12 Total: -60.01 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.16 Total: -24.61 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.04 Total: -1.08 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.03 -6.61 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344120566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.373 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds