Wall clock time and date at job start Tue Mar 31 2020 03:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38249 * 120.00105 * 2 1 4 4 C 1.38208 * 120.00023 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00332 * 359.97438 * 4 3 2 6 6 C 1.38211 * 119.99641 * 359.96158 * 5 4 3 7 7 S 1.76192 * 119.99991 * 179.97438 * 6 5 4 8 8 O 1.42108 * 106.40473 * 336.46064 * 7 6 5 9 9 O 1.42099 * 106.40540 * 203.53865 * 7 6 5 10 10 N 1.65601 * 107.21921 * 89.99778 * 7 6 5 11 11 C 1.46969 * 120.59335 * 89.99860 * 10 7 6 12 12 C 1.53365 * 108.63823 * 235.25127 * 11 10 7 13 13 N 1.46971 * 108.63406 * 310.57818 * 12 11 10 14 14 C 1.36933 * 120.58954 * 235.20080 * 13 12 11 15 15 H 1.08004 * 119.99676 * 151.84704 * 14 13 12 16 16 C 1.38804 * 120.00274 * 331.57456 * 14 13 12 17 17 N 1.31613 * 120.00257 * 342.82344 * 16 14 13 18 18 Si 1.86809 * 120.00042 * 162.81945 * 16 14 13 19 19 H 1.48504 * 109.46931 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46750 * 119.99895 * 18 16 14 21 21 H 1.48498 * 109.47076 * 239.99975 * 18 16 14 22 22 C 1.46964 * 118.81046 * 55.47559 * 13 12 11 23 23 C 1.46965 * 120.59741 * 270.02589 * 10 7 6 24 24 C 1.38216 * 119.99669 * 180.21152 * 2 1 3 25 25 H 1.08997 * 109.46951 * 90.00282 * 1 2 3 26 26 H 1.09001 * 109.47115 * 209.99913 * 1 2 3 27 27 H 1.08994 * 109.47091 * 330.00498 * 1 2 3 28 28 H 1.08006 * 119.99998 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.99914 * 179.97438 * 4 3 2 30 30 H 1.07999 * 120.00000 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.60759 * 115.50390 * 11 10 7 32 32 H 1.08997 * 109.60686 * 354.99877 * 11 10 7 33 33 H 1.08993 * 109.61301 * 190.83327 * 12 11 10 34 34 H 1.09004 * 109.75220 * 70.40370 * 12 11 10 35 35 H 0.97004 * 120.00510 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.60931 * 64.27031 * 22 13 12 37 37 H 1.09004 * 109.60392 * 184.78099 * 22 13 12 38 38 H 1.09002 * 109.60509 * 244.49628 * 23 10 7 39 39 H 1.09002 * 109.60747 * 5.00353 * 23 10 7 40 40 H 1.07998 * 120.00346 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2718 -0.0001 -0.0005 6 6 3.5807 -1.1970 0.0008 7 16 4.4616 -2.7229 0.0001 8 8 5.7439 -2.4458 -0.5462 9 8 3.5792 -3.6955 -0.5428 10 7 4.7089 -3.1469 1.5817 11 6 3.7250 -3.9709 2.2978 12 6 3.2987 -3.2296 3.5710 13 7 4.5057 -2.7881 4.2838 14 6 4.7096 -3.1379 5.5919 15 1 5.7149 -3.2287 5.9761 16 6 3.6244 -3.3703 6.4255 17 7 2.4284 -2.9395 6.0845 18 14 3.8612 -4.2947 8.0315 19 1 5.2906 -4.6685 8.1813 20 1 3.4553 -3.4273 9.1664 21 1 3.0262 -5.5227 8.0236 22 6 5.4869 -1.9594 3.5694 23 6 5.9159 -2.7054 2.2946 24 6 2.1981 -1.1970 -0.0044 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1326 -0.0010 30 1 5.3517 0.0000 -0.0014 31 1 4.1740 -4.9277 2.5646 32 1 2.8551 -4.1368 1.6624 33 1 2.7218 -3.8994 4.2085 34 1 2.6922 -2.3632 3.3072 35 1 1.6701 -3.1015 6.6672 36 1 5.0341 -1.0045 3.3028 37 1 6.3554 -1.7904 4.2059 38 1 6.5209 -3.5722 2.5610 39 1 6.4929 -2.0356 1.6570 40 1 1.6581 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:27 Heat of formation + Delta-G solvation = -18.750293 kcal Electronic energy + Delta-G solvation = -24516.038931 eV Core-core repulsion = 21037.570092 eV Total energy + Delta-G solvation = -3478.468839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.29771 -37.59734 -37.06805 -35.63257 -33.82788 -32.92922 -31.23160 -31.10639 -30.17965 -27.05397 -26.41794 -23.40966 -23.12010 -22.88021 -21.81309 -20.00483 -18.54205 -17.73633 -17.34266 -16.22192 -15.95341 -15.93599 -15.07978 -14.80434 -14.34710 -13.98377 -13.92255 -13.73131 -13.64669 -13.44103 -13.24224 -12.97750 -12.39030 -12.33343 -12.16464 -12.13148 -11.99453 -11.87161 -11.41164 -11.25325 -11.15121 -10.84927 -10.76180 -10.65801 -10.40672 -10.23956 -9.97128 -9.75631 -9.31588 -8.80304 -8.75718 -8.49078 -6.71151 -5.85526 -3.29618 0.57857 0.91451 1.28501 3.14616 3.33366 3.41970 3.43836 3.55071 4.00092 4.42186 4.44167 4.73666 4.81739 4.93927 5.13434 5.21392 5.21912 5.30864 5.43657 5.50464 5.51476 5.67765 5.75829 5.84511 5.91143 6.01065 6.03775 6.08591 6.22248 6.25235 6.35625 6.38873 6.42658 6.62112 6.80415 6.84241 6.90861 7.25632 7.53653 7.73425 8.36466 9.12754 9.75636 10.32909 11.22032 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.015696 B = 0.005060 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.415337 B = 5532.131979 C = 6286.339033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.107 4.107 3 C -0.070 4.070 4 C -0.138 4.138 5 C -0.025 4.025 6 C -0.666 4.666 7 S 2.688 3.312 8 O -0.966 6.966 9 O -0.963 6.963 10 N -0.984 5.984 11 C 0.096 3.904 12 C 0.157 3.843 13 N -0.588 5.588 14 C -0.253 4.253 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.903 3.097 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.288 1.288 22 C 0.131 3.869 23 C 0.104 3.896 24 C -0.017 4.017 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.137 0.863 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.022 0.978 35 H 0.254 0.746 36 H 0.023 0.977 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 6.164 -12.178 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.108 4.108 3 C -0.088 4.088 4 C -0.157 4.157 5 C -0.045 4.045 6 C -0.752 4.752 7 S 2.779 3.221 8 O -0.956 6.956 9 O -0.954 6.954 10 N -0.824 5.824 11 C -0.031 4.031 12 C 0.030 3.970 13 N -0.311 5.311 14 C -0.383 4.383 15 H 0.085 0.915 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.733 3.267 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.215 1.215 22 C 0.003 3.997 23 C -0.023 4.023 24 C -0.036 4.036 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.155 0.845 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.456 5.677 -12.793 14.004 hybrid contribution -0.378 0.327 1.255 1.351 sum -0.833 6.004 -11.538 13.034 Atomic orbital electron populations 1.20813 0.90537 1.03456 1.02360 1.20035 0.96572 0.93127 1.01024 1.21309 0.94441 0.97690 0.95342 1.21232 0.94442 0.98183 1.01813 1.20869 1.00073 0.91209 0.92307 1.31133 1.06425 1.20766 1.16872 1.02006 0.73442 0.73710 0.72932 1.93537 1.39377 1.85919 1.76766 1.93543 1.67201 1.57830 1.76788 1.57396 1.30428 1.64473 1.30089 1.22359 0.90204 0.94460 0.96045 1.21178 0.88959 0.97144 0.89729 1.43914 1.21001 1.57028 1.09119 1.19244 0.92370 1.40973 0.85682 0.91458 1.25061 0.96232 1.00550 0.97741 1.70022 0.99554 1.46905 1.38149 0.86219 0.77696 0.79498 0.83316 1.20215 1.21778 1.21495 1.21378 0.94041 0.92463 0.91831 1.22144 0.85038 0.99728 0.95350 1.20800 0.91971 0.98779 0.92081 0.91108 0.90894 0.91310 0.85533 0.85234 0.84532 0.91273 0.90527 0.88274 0.95942 0.93599 0.95956 0.91563 0.91029 0.90413 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 2 C -0.11 -1.37 5.88 -104.62 -0.62 -1.98 16 3 C -0.07 -0.81 9.70 -39.59 -0.38 -1.20 16 4 C -0.14 -1.66 10.05 -39.58 -0.40 -2.06 16 5 C -0.03 -0.35 9.52 -39.58 -0.38 -0.73 16 6 C -0.67 -10.21 5.97 -39.58 -0.24 -10.45 16 7 S 2.69 44.77 5.69 -107.50 -0.61 44.16 16 8 O -0.97 -17.17 15.98 -57.17 -0.91 -18.09 16 9 O -0.96 -17.64 15.97 -57.17 -0.91 -18.55 16 10 N -0.98 -17.21 3.26 -113.00 -0.37 -17.58 16 11 C 0.10 1.79 6.55 -3.60 -0.02 1.76 16 12 C 0.16 3.55 5.51 -3.60 -0.02 3.53 16 13 N -0.59 -14.01 2.96 -171.77 -0.51 -14.52 16 14 C -0.25 -6.64 9.57 -15.06 -0.14 -6.78 16 15 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 16 C 0.00 0.08 4.91 -17.44 -0.09 -0.01 16 17 N -0.90 -25.15 11.20 55.49 0.62 -24.52 16 18 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.13 2.58 6.70 -3.37 -0.02 2.56 16 23 C 0.10 1.77 6.56 -3.37 -0.02 1.75 16 24 C -0.02 -0.25 9.18 -39.58 -0.36 -0.61 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 27 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.14 1.70 7.62 -52.49 -0.40 1.30 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.30 7.09 -51.93 -0.37 0.93 16 33 H 0.10 2.49 6.00 -51.93 -0.31 2.17 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.14 7.09 -51.93 -0.37 0.78 16 40 H 0.14 1.90 7.61 -52.49 -0.40 1.50 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -31.97 338.62 -10.56 -42.53 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.61 Total: 0.50 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.33 Total: -15.00 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.26 Total: -56.63 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -1.83 Total: -36.64 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 16 Polarization: 44.77 SS G_CDS: -0.61 Total: 44.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.97 -10.56 -42.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.775 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds