Wall clock time and date at job start Tue Mar 31 2020 04:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99424 * 2 1 4 4 C 1.50694 * 109.47706 * 293.95474 * 3 2 1 5 5 O 1.21303 * 119.99503 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00498 * 180.02562 * 4 3 2 7 7 C 1.37100 * 119.99807 * 179.97438 * 6 4 3 8 8 H 1.07992 * 120.00290 * 0.02562 * 7 6 4 9 9 C 1.38957 * 119.99521 * 180.02562 * 7 6 4 10 10 N 1.31405 * 120.00233 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99804 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47400 * 89.99719 * 11 9 7 13 13 H 1.48496 * 109.47057 * 210.00013 * 11 9 7 14 14 H 1.48507 * 109.46868 * 329.99618 * 11 9 7 15 15 C 1.46901 * 111.00164 * 123.95382 * 2 1 3 16 16 C 1.50693 * 109.47201 * 66.05032 * 15 2 1 17 17 C 1.38233 * 120.00207 * 89.99355 * 16 15 2 18 18 C 1.38234 * 120.00037 * 179.72405 * 17 16 15 19 19 C 1.38235 * 120.00220 * 0.28719 * 18 17 16 20 20 S 1.76202 * 120.00249 * 179.97438 * 19 18 17 21 21 C 1.81393 * 103.00197 * 89.99703 * 20 19 18 22 22 O 1.42103 * 102.99798 * 336.14171 * 20 19 18 23 23 C 1.38238 * 119.99712 * 359.97124 * 19 18 17 24 24 C 1.38233 * 120.00012 * 359.96176 * 23 19 18 25 25 H 1.09002 * 109.47230 * 296.03785 * 1 2 3 26 26 H 1.08995 * 109.47474 * 56.04760 * 1 2 3 27 27 H 1.09004 * 109.46478 * 176.04551 * 1 2 3 28 28 H 1.09001 * 109.47370 * 53.96001 * 3 2 1 29 29 H 1.09009 * 109.47154 * 173.95232 * 3 2 1 30 30 H 0.96998 * 119.99689 * 0.02562 * 6 4 3 31 31 H 0.96995 * 120.00562 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.47084 * 306.05037 * 15 2 1 33 33 H 1.09001 * 109.46701 * 186.04772 * 15 2 1 34 34 H 1.08002 * 120.00157 * 0.02562 * 17 16 15 35 35 H 1.07999 * 120.00009 * 180.25939 * 18 17 16 36 36 H 1.08997 * 109.47616 * 59.99698 * 21 20 19 37 37 H 1.09000 * 109.47499 * 180.02562 * 21 20 19 38 38 H 1.09008 * 109.47248 * 300.00312 * 21 20 19 39 39 H 1.08002 * 119.99672 * 179.97438 * 23 19 18 40 40 H 1.08004 * 119.99493 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2983 5 8 1.0045 1.4456 -2.1407 6 7 2.0187 3.3200 -1.5236 7 6 1.6929 3.9345 -2.7051 8 1 1.1299 3.3989 -3.4551 9 6 2.0870 5.2466 -2.9375 10 7 2.7716 5.8985 -2.0247 11 14 1.6425 6.0841 -4.5470 12 1 0.3308 6.7655 -4.4047 13 1 2.6854 7.0844 -4.8889 14 1 1.5581 5.0682 -5.6268 15 6 1.9955 -0.7660 1.1376 16 6 1.6371 -2.2204 0.9728 17 6 2.4941 -3.0715 0.3005 18 6 2.1680 -4.4069 0.1543 19 6 0.9821 -4.8899 0.6754 20 16 0.5661 -6.5919 0.4885 21 6 1.2885 -7.3534 1.9679 22 8 1.3130 -6.9796 -0.6566 23 6 0.1227 -4.0375 1.3431 24 6 0.4494 -2.7025 1.4904 25 1 -0.3634 0.4511 0.9234 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3632 -1.0253 -0.0709 28 1 1.5610 1.9273 0.8310 29 1 3.0797 1.3445 0.1083 30 1 2.5246 3.8009 -0.8501 31 1 3.0464 6.8144 -2.1867 32 1 1.5611 -0.3873 2.0628 33 1 3.0798 -0.6610 1.1755 34 1 3.4207 -2.6943 -0.1064 35 1 2.8394 -5.0728 -0.3673 36 1 0.8448 -6.9091 2.8588 37 1 1.0901 -8.4251 1.9586 38 1 2.3653 -7.1836 1.9751 39 1 -0.8040 -4.4148 1.7498 40 1 -0.2219 -2.0367 2.0125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178433888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:14 Heat of formation + Delta-G solvation = -35.646149 kcal Electronic energy + Delta-G solvation = -22431.828443 eV Core-core repulsion = 18952.626945 eV Total energy + Delta-G solvation = -3479.201499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.114 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -39.63830 -38.41490 -36.29776 -35.93226 -33.87772 -31.85457 -31.23319 -31.09436 -29.13135 -27.84636 -27.04612 -24.76389 -22.96626 -22.69162 -20.94849 -19.17184 -18.31062 -17.85016 -16.84868 -16.18267 -15.80391 -15.49210 -15.20722 -15.00930 -14.63694 -14.57091 -14.17758 -13.89389 -13.80468 -13.61500 -13.39846 -13.32079 -12.91897 -12.59717 -12.18821 -12.12328 -11.91027 -11.63078 -11.46643 -11.33106 -11.18645 -11.10112 -10.94326 -10.42092 -10.38760 -10.21774 -9.47750 -9.21555 -9.03842 -8.61735 -8.46299 -7.97919 -7.86171 -6.41670 -3.82355 0.73151 1.28595 1.65637 2.44970 3.17912 3.26608 3.32677 3.42852 3.69924 3.90367 4.11020 4.31886 4.64880 4.72869 4.83560 4.84898 4.92808 5.03864 5.21316 5.25579 5.27545 5.46040 5.50170 5.62109 5.68615 5.70696 5.74670 5.89615 5.95601 5.96626 6.10463 6.16922 6.27410 6.49059 6.55187 6.81849 7.23400 7.33572 7.55494 8.06591 8.62037 9.18416 9.54452 10.06495 10.76112 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.034259 B = 0.002298 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.104115 B =12183.784556 C =12501.805400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.513 5.513 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.576 6.576 6 N -0.565 5.565 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.084 3.916 16 C -0.030 4.030 17 C -0.112 4.112 18 C -0.054 4.054 19 C -0.466 4.466 20 S 1.331 4.669 21 C -0.499 4.499 22 O -0.858 6.858 23 C -0.047 4.047 24 C -0.130 4.130 25 H 0.014 0.986 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.392 0.608 31 H 0.271 0.729 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.134 0.866 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.630 -20.530 14.451 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.236 5.236 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.460 6.460 6 N -0.201 5.201 7 C -0.427 4.427 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.043 4.043 16 C -0.031 4.031 17 C -0.131 4.131 18 C -0.073 4.073 19 C -0.563 4.563 20 S 1.528 4.472 21 C -0.656 4.656 22 O -0.854 6.854 23 C -0.066 4.066 24 C -0.150 4.150 25 H 0.033 0.967 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.225 0.775 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.152 0.848 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.295 -21.401 12.700 25.670 hybrid contribution 2.261 1.794 0.631 2.954 sum -4.035 -19.608 13.331 24.051 Atomic orbital electron populations 1.22623 0.86573 1.02278 1.01383 1.61581 1.08988 1.12724 1.40339 1.21886 1.00694 0.88658 0.97316 1.19706 0.85515 0.82934 0.88913 1.90498 1.43830 1.64603 1.47071 1.41863 1.49439 1.10757 1.18075 1.19697 1.32860 0.95460 0.94724 0.87915 1.25262 0.96820 0.96662 0.99252 1.69606 1.38083 1.12226 1.34474 0.85857 0.77998 0.78900 0.81537 1.20427 1.20937 1.19399 1.21195 1.00807 0.89744 0.92602 1.19986 0.93781 0.95081 0.94251 1.21149 1.00414 0.93102 0.98475 1.21079 0.95175 0.95923 0.95143 1.27517 1.01741 1.17862 1.09168 1.69405 1.14403 0.80937 0.82469 1.27783 1.09847 1.09860 1.18075 1.93118 1.73512 1.78849 1.39916 1.20750 0.97747 0.92943 0.95196 1.21190 0.96654 0.95809 1.01348 0.96737 0.88521 0.91820 0.93343 0.89368 0.77507 0.91891 0.93849 0.89817 0.85562 0.85769 0.87163 0.87820 0.90102 0.84771 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.77 60.07 0.53 0.84 16 2 N -0.51 -8.63 4.49 -245.82 -1.10 -9.73 16 3 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 4 C 0.44 10.52 7.48 -10.99 -0.08 10.44 16 5 O -0.58 -15.66 13.91 5.54 0.08 -15.58 16 6 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 11 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.08 1.08 5.12 -4.98 -0.03 1.06 16 16 C -0.03 -0.38 4.89 -104.63 -0.51 -0.89 16 17 C -0.11 -1.47 9.70 -39.58 -0.38 -1.85 16 18 C -0.05 -0.70 9.44 -39.58 -0.37 -1.07 16 19 C -0.47 -4.70 5.61 -39.58 -0.22 -4.92 16 20 S 1.33 9.70 14.19 -107.50 -1.53 8.18 16 21 C -0.50 -2.90 10.70 101.05 1.08 -1.82 16 22 O -0.86 -12.33 16.90 -35.23 -0.60 -12.92 16 23 C -0.05 -0.40 9.75 -39.58 -0.39 -0.78 16 24 C -0.13 -1.35 7.96 -39.58 -0.31 -1.66 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.10 1.94 5.82 -51.93 -0.30 1.64 16 27 H 0.06 0.95 6.15 -51.93 -0.32 0.63 16 28 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 29 H 0.09 1.41 7.93 -51.92 -0.41 1.00 16 30 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 31 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.04 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.08 1.00 7.87 -51.93 -0.41 0.59 16 34 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.12 1.68 7.45 -52.49 -0.39 1.29 16 36 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 40 H 0.13 1.09 8.02 -52.48 -0.42 0.67 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -37.63 350.24 -8.65 -46.28 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -5.46 Total: 8.49 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.96 Total: -7.87 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.44 Total: -48.00 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.52 Total: -28.50 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 9.70 SS G_CDS: -1.53 Total: 8.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.63 -8.65 -46.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178433888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.638 kcal (2) G-P(sol) polarization free energy of solvation -37.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds