Wall clock time and date at job start Tue Mar 31 2020 04:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99424 * 2 1 4 4 C 1.50694 * 109.47706 * 293.95474 * 3 2 1 5 5 O 1.21303 * 119.99503 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00498 * 180.02562 * 4 3 2 7 7 C 1.37100 * 119.99807 * 179.97438 * 6 4 3 8 8 H 1.07992 * 120.00290 * 0.02562 * 7 6 4 9 9 C 1.38957 * 119.99521 * 180.02562 * 7 6 4 10 10 N 1.31405 * 120.00233 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99804 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47400 * 89.99719 * 11 9 7 13 13 H 1.48496 * 109.47057 * 210.00013 * 11 9 7 14 14 H 1.48507 * 109.46868 * 329.99618 * 11 9 7 15 15 C 1.46901 * 111.00164 * 123.95382 * 2 1 3 16 16 C 1.50693 * 109.47201 * 66.05032 * 15 2 1 17 17 C 1.38233 * 120.00207 * 89.99355 * 16 15 2 18 18 C 1.38234 * 120.00037 * 179.72405 * 17 16 15 19 19 C 1.38235 * 120.00220 * 0.28719 * 18 17 16 20 20 S 1.76202 * 120.00249 * 179.97438 * 19 18 17 21 21 C 1.81393 * 103.00197 * 89.99703 * 20 19 18 22 22 O 1.42103 * 102.99798 * 336.14171 * 20 19 18 23 23 C 1.38238 * 119.99712 * 359.97124 * 19 18 17 24 24 C 1.38233 * 120.00012 * 359.96176 * 23 19 18 25 25 H 1.09002 * 109.47230 * 296.03785 * 1 2 3 26 26 H 1.08995 * 109.47474 * 56.04760 * 1 2 3 27 27 H 1.09004 * 109.46478 * 176.04551 * 1 2 3 28 28 H 1.09001 * 109.47370 * 53.96001 * 3 2 1 29 29 H 1.09009 * 109.47154 * 173.95232 * 3 2 1 30 30 H 0.96998 * 119.99689 * 0.02562 * 6 4 3 31 31 H 0.96995 * 120.00562 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.47084 * 306.05037 * 15 2 1 33 33 H 1.09001 * 109.46701 * 186.04772 * 15 2 1 34 34 H 1.08002 * 120.00157 * 0.02562 * 17 16 15 35 35 H 1.07999 * 120.00009 * 180.25939 * 18 17 16 36 36 H 1.08997 * 109.47616 * 59.99698 * 21 20 19 37 37 H 1.09000 * 109.47499 * 180.02562 * 21 20 19 38 38 H 1.09008 * 109.47248 * 300.00312 * 21 20 19 39 39 H 1.08002 * 119.99672 * 179.97438 * 23 19 18 40 40 H 1.08004 * 119.99493 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2983 5 8 1.0045 1.4456 -2.1407 6 7 2.0187 3.3200 -1.5236 7 6 1.6929 3.9345 -2.7051 8 1 1.1299 3.3989 -3.4551 9 6 2.0870 5.2466 -2.9375 10 7 2.7716 5.8985 -2.0247 11 14 1.6425 6.0841 -4.5470 12 1 0.3308 6.7655 -4.4047 13 1 2.6854 7.0844 -4.8889 14 1 1.5581 5.0682 -5.6268 15 6 1.9955 -0.7660 1.1376 16 6 1.6371 -2.2204 0.9728 17 6 2.4941 -3.0715 0.3005 18 6 2.1680 -4.4069 0.1543 19 6 0.9821 -4.8899 0.6754 20 16 0.5661 -6.5919 0.4885 21 6 1.2885 -7.3534 1.9679 22 8 1.3130 -6.9796 -0.6566 23 6 0.1227 -4.0375 1.3431 24 6 0.4494 -2.7025 1.4904 25 1 -0.3634 0.4511 0.9234 26 1 -0.3634 0.5739 -0.8524 27 1 -0.3632 -1.0253 -0.0709 28 1 1.5610 1.9273 0.8310 29 1 3.0797 1.3445 0.1083 30 1 2.5246 3.8009 -0.8501 31 1 3.0464 6.8144 -2.1867 32 1 1.5611 -0.3873 2.0628 33 1 3.0798 -0.6610 1.1755 34 1 3.4207 -2.6943 -0.1064 35 1 2.8394 -5.0728 -0.3673 36 1 0.8448 -6.9091 2.8588 37 1 1.0901 -8.4251 1.9586 38 1 2.3653 -7.1836 1.9751 39 1 -0.8040 -4.4148 1.7498 40 1 -0.2219 -2.0367 2.0125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178433888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:13 Heat of formation + Delta-G solvation = -65.056186 kcal Electronic energy + Delta-G solvation = -22433.103758 eV Core-core repulsion = 18952.626945 eV Total energy + Delta-G solvation = -3480.476814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.114 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.70123 -40.00983 -37.64557 -36.86617 -35.88140 -33.30970 -32.79852 -31.93335 -29.66370 -29.33757 -28.11789 -26.61177 -24.10461 -23.64376 -21.95432 -21.00092 -19.86998 -19.04707 -17.95575 -17.49525 -16.82203 -16.73522 -16.55157 -16.20400 -15.93146 -15.77075 -15.49856 -15.17560 -15.08632 -14.69323 -14.49173 -14.27030 -13.81357 -13.63296 -13.50323 -13.35969 -13.09756 -12.98307 -12.88284 -12.64950 -12.53310 -12.43191 -12.29986 -12.13230 -11.96965 -11.46899 -11.26096 -10.31018 -10.08338 -10.00799 -9.87249 -9.35531 -9.16980 -8.47281 -5.95754 -0.07343 0.44633 0.99452 1.36818 1.40520 1.53263 1.81232 2.04992 2.27376 2.53947 2.94884 3.07100 3.19500 3.44056 3.75312 3.86251 4.08609 4.22225 4.26390 4.34373 4.36963 4.46083 4.50603 4.51751 4.53931 4.65241 4.70738 4.74154 4.90240 5.09015 5.18656 5.18992 5.29548 5.31401 5.40370 5.60968 5.86025 6.00827 6.06425 6.17733 6.60507 7.12754 7.56139 8.12586 8.70105 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.034259 B = 0.002298 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.104115 B =12183.784556 C =12501.805400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.538 5.538 3 C 0.059 3.941 4 C 0.441 3.559 5 O -0.616 6.616 6 N -0.575 5.575 7 C -0.331 4.331 8 H 0.077 0.923 9 C -0.014 4.014 10 N -0.920 5.920 11 Si 0.992 3.008 12 H -0.269 1.269 13 H -0.271 1.271 14 H -0.275 1.275 15 C 0.089 3.911 16 C -0.048 4.048 17 C -0.134 4.134 18 C -0.084 4.084 19 C -0.472 4.472 20 S 1.397 4.603 21 C -0.495 4.495 22 O -0.933 6.933 23 C -0.034 4.034 24 C -0.133 4.133 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.396 0.604 31 H 0.277 0.723 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.058 0.942 39 H 0.191 0.809 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 -21.056 16.963 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.263 5.263 3 C -0.072 4.072 4 C 0.228 3.772 5 O -0.502 6.502 6 N -0.212 5.212 7 C -0.461 4.461 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.561 5.561 11 Si 0.816 3.184 12 H -0.195 1.195 13 H -0.195 1.195 14 H -0.200 1.200 15 C -0.038 4.038 16 C -0.049 4.049 17 C -0.154 4.154 18 C -0.103 4.103 19 C -0.568 4.568 20 S 1.595 4.405 21 C -0.653 4.653 22 O -0.929 6.929 23 C -0.053 4.053 24 C -0.152 4.152 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.230 0.770 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.163 0.837 37 H 0.140 0.860 38 H 0.078 0.922 39 H 0.209 0.791 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.869 -21.911 15.229 27.820 hybrid contribution 2.728 1.817 -0.040 3.278 sum -5.141 -20.094 15.188 25.708 Atomic orbital electron populations 1.22464 0.86530 1.02511 1.00605 1.61477 1.09345 1.12222 1.43241 1.21741 1.02060 0.89271 0.94164 1.20797 0.83717 0.82204 0.90478 1.90476 1.45199 1.65377 1.49132 1.41930 1.50064 1.11587 1.17640 1.19630 1.34361 0.96418 0.95697 0.90493 1.26026 0.96288 0.96630 1.02381 1.69662 1.38097 1.12651 1.35721 0.84942 0.78328 0.77761 0.77391 1.19454 1.19529 1.20023 1.21217 1.01152 0.89451 0.91957 1.20050 0.94884 0.94663 0.95266 1.21166 1.00773 0.93683 0.99744 1.21064 0.96646 0.95758 0.96842 1.27891 1.00792 1.19638 1.08489 1.68459 1.12589 0.78483 0.80930 1.27741 1.08482 1.11157 1.17887 1.92991 1.75303 1.80016 1.44610 1.21394 0.98841 0.91888 0.93153 1.21585 0.95865 0.97103 1.00665 0.94235 0.92932 0.90498 0.90802 0.87398 0.76986 0.91307 0.91331 0.89390 0.86791 0.88052 0.83737 0.86040 0.92238 0.79138 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 8.77 127.69 1.12 1.96 16 2 N -0.54 -17.56 4.49 -931.65 -4.18 -21.75 16 3 C 0.06 2.03 5.45 85.56 0.47 2.49 16 4 C 0.44 21.27 7.48 87.66 0.66 21.93 16 5 O -0.62 -34.73 13.91 -3.10 -0.04 -34.77 16 6 N -0.57 -29.81 5.29 -306.98 -1.62 -31.43 16 7 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 10 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 11 Si 0.99 43.50 29.55 68.60 2.03 45.52 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 15 C 0.09 2.11 5.12 85.55 0.44 2.55 16 16 C -0.05 -1.13 4.89 -19.87 -0.10 -1.23 16 17 C -0.13 -3.63 9.70 22.27 0.22 -3.42 16 18 C -0.08 -2.24 9.44 22.27 0.21 -2.03 16 19 C -0.47 -8.78 5.61 22.27 0.12 -8.65 16 20 S 1.40 18.04 14.19 -56.49 -0.80 17.24 16 21 C -0.49 -4.32 10.70 113.37 1.21 -3.11 16 22 O -0.93 -27.39 16.90 -148.98 -2.52 -29.91 16 23 C -0.03 -0.44 9.75 22.27 0.22 -0.22 16 24 C -0.13 -2.29 7.96 22.27 0.18 -2.11 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.05 2.13 5.82 -2.39 -0.01 2.12 16 27 H 0.08 2.15 6.15 -2.38 -0.01 2.14 16 28 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 29 H 0.11 3.31 7.93 -2.38 -0.02 3.29 16 30 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 31 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.07 1.30 8.07 -2.39 -0.02 1.28 16 33 H 0.09 1.98 7.87 -2.39 -0.02 1.96 16 34 H 0.11 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.10 3.05 7.45 -2.91 -0.02 3.03 16 36 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 40 H 0.15 1.85 8.02 -2.91 -0.02 1.83 16 Total: -1.00 -86.59 350.24 -0.52 -87.10 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.32 Total: 28.03 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 6.02 Total: -10.36 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -5.52 Total: -102.86 kcal Atomic # 8 Polarization: -62.12 SS G_CDS: -2.56 Total: -64.68 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 18.04 SS G_CDS: -0.80 Total: 17.24 kcal Total: -86.59 -0.52 -87.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178433888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.044 kcal (2) G-P(sol) polarization free energy of solvation -86.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds