Wall clock time and date at job start Tue Mar 31 2020 04:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 N 1.46507 * 109.46582 * 119.99572 * 2 1 3 13 13 C 1.46501 * 119.99975 * 60.00272 * 12 2 1 14 14 S 1.65599 * 120.00003 * 239.99677 * 12 2 1 15 15 O 1.42099 * 106.40310 * 203.54388 * 14 12 2 16 16 O 1.42101 * 106.40185 * 336.46466 * 14 12 2 17 17 N 1.65604 * 107.21526 * 89.99996 * 14 12 2 18 18 C 1.47141 * 120.98587 * 269.71981 * 17 14 12 19 19 C 1.53708 * 108.16369 * 129.43468 * 18 17 14 20 20 O 1.42963 * 109.14979 * 52.53876 * 19 18 17 21 21 C 1.42965 * 114.16127 * 297.28577 * 20 19 18 22 22 H 1.08994 * 109.51606 * 302.65801 * 21 20 19 23 23 C 1.53001 * 109.55143 * 182.52912 * 21 20 19 24 24 F 1.39902 * 109.47085 * 65.23012 * 23 21 20 25 25 C 1.47157 * 120.97644 * 89.99949 * 17 14 12 26 26 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 27 27 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 29 29 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47537 * 89.99592 * 13 12 2 31 31 H 1.08995 * 109.46832 * 209.99765 * 13 12 2 32 32 H 1.09005 * 109.47098 * 329.99406 * 13 12 2 33 33 H 1.09000 * 109.68317 * 249.21327 * 18 17 14 34 34 H 1.09003 * 109.68192 * 9.76242 * 18 17 14 35 35 H 1.09006 * 109.65698 * 292.57169 * 19 18 17 36 36 H 1.09004 * 109.48762 * 172.39781 * 19 18 17 37 37 H 1.08998 * 109.47513 * 185.23332 * 23 21 20 38 38 H 1.09002 * 109.46944 * 305.23184 * 23 21 20 39 39 H 1.08996 * 109.68347 * 350.23931 * 25 17 14 40 40 H 1.09000 * 109.67831 * 110.75385 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.3555 -2.1612 -4.4148 10 1 2.4911 -0.1346 -5.1106 11 1 3.6388 -1.7479 -3.7104 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 16 2.9704 0.1142 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1829 1.5749 17 7 1.9606 0.8093 3.3998 18 6 1.4369 2.1700 3.2021 19 6 -0.0876 2.1294 3.3947 20 8 -0.3855 1.5111 4.6488 21 6 0.0390 0.1493 4.7453 22 1 -0.4168 -0.4318 3.9437 23 6 -0.3861 -0.4248 6.0982 24 9 -1.7826 -0.4724 6.1666 25 6 1.5654 0.0864 4.6191 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7043 1.1577 -3.4845 30 1 2.4156 -2.7378 0.9719 31 1 1.6236 -2.2851 2.5003 32 1 0.6903 -2.3001 0.9848 33 1 1.8840 2.8451 3.9317 34 1 1.6717 2.5109 2.1937 35 1 -0.5439 1.5554 2.5882 36 1 -0.4823 3.1455 3.3869 37 1 0.0176 -1.4312 6.2089 38 1 -0.0046 0.2097 6.8982 39 1 1.8855 -0.9532 4.5497 40 1 2.0258 0.5549 5.4890 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416566310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:55 Heat of formation + Delta-G solvation = -162.347249 kcal Electronic energy + Delta-G solvation = -26063.877993 eV Core-core repulsion = 22148.413097 eV Total energy + Delta-G solvation = -3915.464895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.71626 -39.35272 -36.87475 -36.24576 -35.35736 -34.76489 -32.67424 -32.62171 -29.18781 -28.26619 -25.84267 -25.53718 -25.19651 -23.22440 -21.39829 -20.56269 -18.66906 -17.59539 -17.13044 -16.98447 -16.52992 -16.26723 -15.81176 -15.58370 -15.21470 -14.97778 -14.72434 -14.36100 -14.10232 -13.70786 -13.44590 -13.28290 -12.91205 -12.46475 -12.10274 -11.94730 -11.85996 -11.76911 -11.49940 -11.43434 -11.32799 -11.31762 -11.19980 -11.03181 -10.86478 -10.67196 -10.41783 -10.37035 -10.27228 -10.01015 -9.34223 -8.82611 -8.51391 -8.05359 -6.13038 -4.19671 0.99523 3.22628 3.25109 3.32413 3.36822 3.45897 3.93741 4.24256 4.35746 4.55288 4.69156 4.77636 4.80125 4.85183 5.06635 5.13749 5.18626 5.19873 5.37764 5.45862 5.50399 5.56753 5.73725 5.89190 6.03402 6.04771 6.26694 6.44239 6.55613 6.69801 6.74114 6.92546 6.98161 7.36850 7.55699 7.71518 7.97086 8.20679 8.82497 9.46574 10.92607 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.004913 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.784195 B = 5697.417125 C = 6012.540666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.989 5.989 13 C 0.110 3.890 14 S 2.776 3.224 15 O -0.991 6.991 16 O -0.967 6.967 17 N -1.013 6.013 18 C 0.089 3.911 19 C 0.047 3.953 20 O -0.371 6.371 21 C 0.043 3.957 22 H 0.078 0.922 23 C 0.074 3.926 24 F -0.210 7.210 25 C 0.099 3.901 26 H 0.094 0.906 27 H 0.034 0.966 28 H 0.009 0.991 29 H 0.264 0.736 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 -0.616 14.723 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.075 0.925 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.832 5.832 13 C -0.036 4.036 14 S 2.787 3.213 15 O -0.975 6.975 16 O -0.951 6.951 17 N -0.851 5.851 18 C -0.036 4.036 19 C -0.030 4.030 20 O -0.290 6.290 21 C -0.017 4.017 22 H 0.096 0.904 23 C 0.018 3.982 24 F -0.192 7.192 25 C -0.028 4.028 26 H 0.113 0.887 27 H 0.053 0.947 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.449 -0.334 14.722 14.928 hybrid contribution -0.054 -0.578 -1.174 1.310 sum -2.504 -0.912 13.548 13.807 Atomic orbital electron populations 1.22163 0.98243 0.99805 1.00548 1.18747 0.91261 0.92908 0.80545 0.92482 1.21314 1.31543 1.13184 0.89979 0.91951 1.24905 0.94930 0.94965 0.99027 1.69844 1.36369 1.22809 1.23869 0.86482 0.79321 0.79277 0.82262 1.20629 1.21087 1.19836 1.57792 1.70004 1.19811 1.35621 1.21149 1.01874 0.82089 0.98536 1.02162 0.73785 0.73123 0.72257 1.93532 1.68980 1.60324 1.74682 1.93602 1.73679 1.55898 1.71936 1.58624 1.67634 1.24490 1.34387 1.22138 0.94723 0.82898 1.03884 1.23145 0.94533 0.99138 0.86223 1.87931 1.80702 1.24322 1.36048 1.23111 0.94720 0.85398 0.98444 0.90367 1.21964 0.76596 1.02391 0.97204 1.92790 1.30967 1.97968 1.97430 1.21845 0.94277 0.98154 0.88526 0.88728 0.94721 0.97197 0.92642 0.93102 0.93598 0.90885 0.90624 0.87853 0.91530 0.87575 0.88958 0.89756 0.88413 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.95 37.16 0.33 -2.86 16 2 C 0.27 6.28 2.63 -69.08 -0.18 6.10 16 3 H 0.06 1.48 6.91 -51.93 -0.36 1.12 16 4 C -0.52 -13.67 8.37 -34.44 -0.29 -13.96 16 5 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 6 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 7 N -0.89 -24.12 11.31 55.43 0.63 -23.49 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.99 -19.69 3.12 -115.85 -0.36 -20.05 16 13 C 0.11 1.87 9.53 59.85 0.57 2.44 16 14 S 2.78 52.80 6.07 -107.50 -0.65 52.15 16 15 O -0.99 -19.68 16.01 -57.17 -0.92 -20.60 16 16 O -0.97 -21.81 15.49 -57.17 -0.89 -22.70 16 17 N -1.01 -14.95 3.39 -112.83 -0.38 -15.33 16 18 C 0.09 1.20 6.60 -3.32 -0.02 1.18 16 19 C 0.05 0.59 7.00 37.53 0.26 0.85 16 20 O -0.37 -4.80 10.38 -35.23 -0.37 -5.17 16 21 C 0.04 0.49 3.13 -26.58 -0.08 0.41 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 C 0.07 0.67 7.21 37.16 0.27 0.93 16 24 F -0.21 -2.56 17.35 2.25 0.04 -2.52 16 25 C 0.10 1.15 5.85 -3.53 -0.02 1.13 16 26 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 27 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 28 H 0.01 0.17 6.63 -51.93 -0.34 -0.17 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 32 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 1.53 7.24 -51.93 -0.38 1.15 16 35 H 0.07 0.90 6.64 -51.93 -0.34 0.55 16 36 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.10 1.06 7.25 -51.93 -0.38 0.68 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -32.00 333.13 -7.85 -39.85 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.69 Total: -0.76 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 0.74 Total: -2.17 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.12 Total: -58.87 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -2.17 Total: -48.46 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 52.80 SS G_CDS: -0.65 Total: 52.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.00 -7.85 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416566310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.500 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds