Wall clock time and date at job start Tue Mar 31 2020 04:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 N 1.46507 * 109.46582 * 119.99572 * 2 1 3 13 13 C 1.46501 * 119.99975 * 60.00272 * 12 2 1 14 14 S 1.65599 * 120.00003 * 239.99677 * 12 2 1 15 15 O 1.42099 * 106.40310 * 203.54388 * 14 12 2 16 16 O 1.42101 * 106.40185 * 336.46466 * 14 12 2 17 17 N 1.65604 * 107.21526 * 89.99996 * 14 12 2 18 18 C 1.47141 * 120.98587 * 269.71981 * 17 14 12 19 19 C 1.53708 * 108.16369 * 129.43468 * 18 17 14 20 20 O 1.42963 * 109.14979 * 52.53876 * 19 18 17 21 21 C 1.42965 * 114.16127 * 297.28577 * 20 19 18 22 22 H 1.08994 * 109.51606 * 302.65801 * 21 20 19 23 23 C 1.53001 * 109.55143 * 182.52912 * 21 20 19 24 24 F 1.39902 * 109.47085 * 65.23012 * 23 21 20 25 25 C 1.47157 * 120.97644 * 89.99949 * 17 14 12 26 26 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 27 27 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 29 29 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47537 * 89.99592 * 13 12 2 31 31 H 1.08995 * 109.46832 * 209.99765 * 13 12 2 32 32 H 1.09005 * 109.47098 * 329.99406 * 13 12 2 33 33 H 1.09000 * 109.68317 * 249.21327 * 18 17 14 34 34 H 1.09003 * 109.68192 * 9.76242 * 18 17 14 35 35 H 1.09006 * 109.65698 * 292.57169 * 19 18 17 36 36 H 1.09004 * 109.48762 * 172.39781 * 19 18 17 37 37 H 1.08998 * 109.47513 * 185.23332 * 23 21 20 38 38 H 1.09002 * 109.46944 * 305.23184 * 23 21 20 39 39 H 1.08996 * 109.68347 * 350.23931 * 25 17 14 40 40 H 1.09000 * 109.67831 * 110.75385 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.3555 -2.1612 -4.4148 10 1 2.4911 -0.1346 -5.1106 11 1 3.6388 -1.7479 -3.7104 12 7 2.0183 -0.6906 1.1963 13 6 1.6643 -2.0931 1.4282 14 16 2.9704 0.1142 2.2863 15 8 3.7117 -0.8788 2.9816 16 8 3.5794 1.1829 1.5749 17 7 1.9606 0.8093 3.3998 18 6 1.4369 2.1700 3.2021 19 6 -0.0876 2.1294 3.3947 20 8 -0.3855 1.5111 4.6488 21 6 0.0390 0.1493 4.7453 22 1 -0.4168 -0.4318 3.9437 23 6 -0.3861 -0.4248 6.0982 24 9 -1.7826 -0.4724 6.1666 25 6 1.5654 0.0864 4.6191 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7043 1.1577 -3.4845 30 1 2.4156 -2.7378 0.9719 31 1 1.6236 -2.2851 2.5003 32 1 0.6903 -2.3001 0.9848 33 1 1.8840 2.8451 3.9317 34 1 1.6717 2.5109 2.1937 35 1 -0.5439 1.5554 2.5882 36 1 -0.4823 3.1455 3.3869 37 1 0.0176 -1.4312 6.2089 38 1 -0.0046 0.2097 6.8982 39 1 1.8855 -0.9532 4.5497 40 1 2.0258 0.5549 5.4890 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416566310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:54 Heat of formation + Delta-G solvation = -185.938636 kcal Electronic energy + Delta-G solvation = -26064.900992 eV Core-core repulsion = 22148.413097 eV Total energy + Delta-G solvation = -3916.487895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.52589 -40.33878 -38.47112 -37.92182 -36.96123 -35.86052 -34.54881 -33.55763 -30.94400 -29.24281 -27.33201 -27.08108 -26.56487 -24.19055 -22.73532 -21.94841 -20.01951 -19.04008 -18.66076 -18.19129 -17.98123 -17.46504 -16.95605 -16.73481 -16.49160 -16.09447 -15.90764 -15.56283 -15.25262 -15.20213 -14.82785 -14.59154 -14.47412 -13.79899 -13.63289 -13.41694 -13.31485 -13.21974 -13.03253 -12.96744 -12.81555 -12.66025 -12.61712 -12.31900 -12.21103 -12.08445 -12.02440 -11.96281 -11.44123 -11.29667 -11.15425 -10.51516 -9.92082 -9.68969 -8.13452 -6.26735 -0.47636 1.41061 1.43482 1.52458 1.88081 2.40040 2.49905 2.60088 3.15021 3.18018 3.52847 3.62596 3.74826 3.99097 4.00346 4.13193 4.19534 4.21805 4.32561 4.43742 4.57740 4.60537 4.68774 4.77731 4.81280 4.92834 4.97701 5.03460 5.08337 5.12155 5.15261 5.36499 5.60002 5.74708 5.85442 6.04542 6.11426 6.28593 6.80378 7.42381 8.90410 Molecular weight = 310.12amu Principal moments of inertia in cm(-1) A = 0.019717 B = 0.004913 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.784195 B = 5697.417125 C = 6012.540666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.275 3.725 3 H 0.026 0.974 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.997 5.997 13 C 0.103 3.897 14 S 2.790 3.210 15 O -1.001 7.001 16 O -1.010 7.010 17 N -1.008 6.008 18 C 0.085 3.915 19 C 0.052 3.948 20 O -0.379 6.379 21 C 0.041 3.959 22 H 0.069 0.931 23 C 0.072 3.928 24 F -0.229 7.229 25 C 0.092 3.908 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.034 0.966 29 H 0.265 0.735 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 -1.381 16.381 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.171 3.829 3 H 0.044 0.956 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.201 1.201 12 N -0.839 5.839 13 C -0.043 4.043 14 S 2.801 3.199 15 O -0.984 6.984 16 O -0.994 6.994 17 N -0.849 5.849 18 C -0.040 4.040 19 C -0.026 4.026 20 O -0.298 6.298 21 C -0.019 4.019 22 H 0.087 0.913 23 C 0.017 3.983 24 F -0.211 7.211 25 C -0.033 4.033 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.881 -1.126 16.390 16.679 hybrid contribution 0.095 -0.325 -1.590 1.626 sum -2.785 -1.451 14.799 15.129 Atomic orbital electron populations 1.21935 0.96816 1.00120 1.00447 1.18393 0.92172 0.91284 0.81084 0.95649 1.21635 1.31568 1.13174 0.91526 0.92732 1.25600 0.95219 0.95661 1.01548 1.69956 1.37056 1.23702 1.24373 0.85627 0.78758 0.78466 0.79205 1.19533 1.20903 1.20077 1.57689 1.69985 1.21069 1.35172 1.21351 1.01716 0.80329 1.00855 1.01502 0.73810 0.72369 0.72182 1.93508 1.69627 1.60662 1.74639 1.93543 1.75180 1.57288 1.73363 1.58251 1.67179 1.24988 1.34455 1.22288 0.95770 0.82417 1.03521 1.23137 0.93412 1.00195 0.85824 1.87936 1.80797 1.25177 1.35900 1.23241 0.94265 0.84662 0.99763 0.91327 1.22218 0.75423 1.04526 0.96155 1.92753 1.32775 1.98121 1.97411 1.22168 0.94755 0.98732 0.87631 0.91390 0.94063 0.94684 0.92601 0.93951 0.90099 0.90473 0.88478 0.89795 0.93004 0.85348 0.85738 0.87906 0.87301 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.95 71.98 0.64 -5.12 16 2 C 0.27 13.07 2.63 44.24 0.12 13.19 16 3 H 0.03 1.38 6.91 -2.39 -0.02 1.36 16 4 C -0.54 -28.75 8.37 25.60 0.21 -28.53 16 5 H 0.05 2.91 7.65 -2.92 -0.02 2.89 16 6 C 0.02 1.06 5.31 84.66 0.45 1.51 16 7 N -0.91 -50.19 11.31 21.45 0.24 -49.95 16 8 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 N -1.00 -39.45 3.12 -520.42 -1.62 -41.07 16 13 C 0.10 3.37 9.53 127.77 1.22 4.58 16 14 S 2.79 104.96 6.07 -56.49 -0.34 104.62 16 15 O -1.00 -38.43 16.01 -128.00 -2.05 -40.48 16 16 O -1.01 -46.55 15.49 -128.00 -1.98 -48.54 16 17 N -1.01 -28.19 3.39 -510.88 -1.73 -29.92 16 18 C 0.09 2.21 6.60 86.50 0.57 2.78 16 19 C 0.05 1.21 7.00 72.22 0.51 1.71 16 20 O -0.38 -8.89 10.38 -148.98 -1.55 -10.44 16 21 C 0.04 0.81 3.13 30.69 0.10 0.91 16 22 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 23 C 0.07 1.05 7.21 71.98 0.52 1.56 16 24 F -0.23 -5.03 17.35 44.97 0.78 -4.25 16 25 C 0.09 1.88 5.85 86.35 0.51 2.38 16 26 H 0.07 3.32 6.06 -2.38 -0.01 3.31 16 27 H 0.04 1.68 6.66 -2.39 -0.02 1.66 16 28 H 0.03 1.29 6.63 -2.39 -0.02 1.27 16 29 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.08 2.04 7.79 -2.39 -0.02 2.02 16 32 H 0.08 2.44 6.43 -2.38 -0.02 2.42 16 33 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 2.52 7.24 -2.39 -0.02 2.50 16 35 H 0.05 1.35 6.64 -2.38 -0.02 1.33 16 36 H 0.13 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 1.99 7.25 -2.39 -0.02 1.97 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -69.36 333.13 -0.35 -69.71 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.04 Total: 10.50 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 4.84 Total: -5.03 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -3.11 Total: -120.94 kcal Atomic # 8 Polarization: -93.87 SS G_CDS: -5.58 Total: -99.45 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.78 Total: -4.25 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 104.96 SS G_CDS: -0.34 Total: 104.62 kcal Total: -69.36 -0.35 -69.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416566310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.233 kcal (2) G-P(sol) polarization free energy of solvation -69.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds