Wall clock time and date at job start Tue Mar 31 2020 04:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47960 * 110.99998 * 2 1 4 4 C 1.53937 * 86.18076 * 137.58551 * 3 2 1 5 5 C 1.47957 * 111.00326 * 99.36211 * 2 1 3 6 6 H 1.08997 * 113.85823 * 336.75051 * 5 2 1 7 7 C 1.53003 * 113.75575 * 108.09805 * 5 2 1 8 8 N 1.46495 * 109.47448 * 281.56338 * 7 5 2 9 9 S 1.65603 * 120.00181 * 165.00015 * 8 7 5 10 10 O 1.42099 * 106.39963 * 311.46375 * 9 8 7 11 11 O 1.42099 * 106.40338 * 178.54092 * 9 8 7 12 12 C 1.76205 * 107.21621 * 65.00236 * 9 8 7 13 13 C 1.38656 * 119.87469 * 270.02211 * 12 9 8 14 14 C 1.38613 * 120.50190 * 180.02562 * 13 12 9 15 15 C 1.37637 * 120.24587 * 359.67071 * 14 13 12 16 16 C 1.40692 * 119.74526 * 0.60131 * 15 14 13 17 17 C 1.41395 * 120.24778 * 179.69853 * 16 15 14 18 18 H 1.07995 * 120.00823 * 154.47937 * 17 16 15 19 19 C 1.39951 * 119.99703 * 334.47919 * 17 16 15 20 20 N 1.30821 * 119.99948 * 160.66562 * 19 17 16 21 21 Si 1.86799 * 119.99946 * 340.94208 * 19 17 16 22 22 H 1.48502 * 109.46981 * 95.24609 * 21 19 17 23 23 H 1.48496 * 109.47177 * 215.24291 * 21 19 17 24 24 H 1.48498 * 109.47401 * 335.24697 * 21 19 17 25 25 C 1.37596 * 119.87474 * 90.00127 * 12 9 8 26 26 H 1.09000 * 109.47388 * 320.63277 * 1 2 3 27 27 H 1.09004 * 109.47361 * 80.63701 * 1 2 3 28 28 H 1.08999 * 109.47248 * 200.63813 * 1 2 3 29 29 H 1.09003 * 113.75563 * 23.27072 * 3 2 1 30 30 H 1.08998 * 113.76309 * 251.90213 * 3 2 1 31 31 H 1.09000 * 113.73564 * 221.92689 * 4 3 2 32 32 H 1.08997 * 113.73506 * 90.63616 * 4 3 2 33 33 H 1.09007 * 109.46948 * 161.56152 * 7 5 2 34 34 H 1.09001 * 109.47358 * 41.56748 * 7 5 2 35 35 H 0.97003 * 120.00230 * 344.99913 * 8 7 5 36 36 H 1.08007 * 119.74781 * 359.97438 * 13 12 9 37 37 H 1.07995 * 119.87411 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.12705 * 180.30446 * 15 14 13 39 39 H 0.96996 * 120.00107 * 179.97438 * 20 19 17 40 40 H 1.07992 * 120.13143 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8792 1.0360 5 6 1.9993 -0.2247 1.3629 6 1 1.3022 0.0432 2.1569 7 6 2.6263 -1.6063 1.5602 8 7 1.5673 -2.6012 1.7468 9 16 1.9141 -4.2149 1.6128 10 8 2.6496 -4.3684 0.4067 11 8 0.7030 -4.9091 1.8783 12 6 3.0185 -4.6216 2.9242 13 6 4.3877 -4.5205 2.7305 14 6 5.2683 -4.8376 3.7530 15 6 4.7907 -5.2506 4.9760 16 6 3.4035 -5.3624 5.1822 17 6 2.9015 -5.7918 6.4323 18 1 1.9092 -5.5017 6.7444 19 6 3.6907 -6.5928 7.2655 20 7 3.4142 -6.6813 8.5410 21 14 5.1435 -7.5296 6.5575 22 1 6.3842 -6.7358 6.7474 23 1 5.2788 -8.8337 7.2546 24 1 4.9227 -7.7637 5.1078 25 6 2.5188 -5.0379 4.1368 26 1 -0.3634 0.7945 0.6518 27 1 -0.3634 0.1672 -1.0140 28 1 -0.3634 -0.9617 0.3622 29 1 1.3009 2.1197 0.3942 30 1 2.4459 1.6803 -0.9482 31 1 3.1921 1.5757 1.8568 32 1 3.9451 0.5051 0.5951 33 1 3.2696 -1.5910 2.4401 34 1 3.2179 -1.8657 0.6822 35 1 0.6628 -2.3147 1.9488 36 1 4.7711 -4.1930 1.7754 37 1 6.3328 -4.7556 3.5909 38 1 5.4784 -5.4925 5.7729 39 1 3.9609 -7.2368 9.1184 40 1 1.4520 -5.1152 4.2858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921413021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:30 Heat of formation + Delta-G solvation = -21.307199 kcal Electronic energy + Delta-G solvation = -23519.723447 eV Core-core repulsion = 20041.143732 eV Total energy + Delta-G solvation = -3478.579715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18950 -37.92932 -36.71969 -35.35301 -34.80660 -33.83013 -30.86434 -30.75062 -30.17064 -27.87192 -25.40865 -24.32569 -23.30214 -22.42909 -20.91493 -20.07438 -19.05699 -18.00691 -17.11389 -16.49378 -16.32280 -16.05317 -15.48948 -15.22440 -14.96641 -14.74479 -14.27491 -13.87279 -13.49191 -13.34582 -13.17014 -12.88396 -12.35235 -12.23917 -12.14553 -11.88306 -11.71440 -11.69823 -11.59148 -11.56381 -11.45146 -11.05336 -10.99544 -10.79795 -10.77728 -10.33723 -10.03479 -9.75508 -9.41137 -9.14011 -9.03278 -8.27523 -7.92640 -7.14164 -4.66791 0.93911 1.91517 2.41215 2.96568 3.10195 3.18775 3.42058 3.67109 3.82173 4.11752 4.25177 4.34069 4.50636 4.84125 4.88611 5.03406 5.04743 5.08536 5.16371 5.20077 5.41315 5.50876 5.61515 5.66734 5.69027 5.80676 5.92357 6.00953 6.04544 6.15799 6.17085 6.45517 6.57438 6.81587 6.83650 7.04078 7.16258 7.19542 7.38643 7.58949 7.76293 8.14016 8.40573 8.57805 9.87289 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.022351 B = 0.003712 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.462288 B = 7541.861430 C = 7749.808599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.476 5.476 3 C -0.002 4.002 4 C -0.139 4.139 5 C 0.023 3.977 6 H 0.086 0.914 7 C 0.138 3.862 8 N -1.118 6.118 9 S 2.691 3.309 10 O -0.969 6.969 11 O -0.971 6.971 12 C -0.623 4.623 13 C -0.163 4.163 14 C -0.089 4.089 15 C -0.205 4.205 16 C 0.073 3.927 17 C -0.439 4.439 18 H 0.095 0.905 19 C 0.083 3.917 20 N -0.796 5.796 21 Si 0.911 3.089 22 H -0.269 1.269 23 H -0.288 1.288 24 H -0.242 1.242 25 C -0.106 4.106 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.411 0.589 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.289 0.711 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 13.522 -10.346 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 N -0.199 5.199 3 C -0.130 4.130 4 C -0.177 4.177 5 C -0.088 4.088 6 H 0.104 0.896 7 C 0.012 3.988 8 N -0.876 5.876 9 S 2.786 3.214 10 O -0.959 6.959 11 O -0.961 6.961 12 C -0.714 4.714 13 C -0.184 4.184 14 C -0.108 4.108 15 C -0.225 4.225 16 C 0.069 3.931 17 C -0.466 4.466 18 H 0.113 0.887 19 C -0.138 4.138 20 N -0.419 5.419 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.215 1.215 24 H -0.166 1.166 25 C -0.127 4.127 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.244 0.756 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.099 0.901 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.819 12.355 -11.296 16.760 hybrid contribution 0.268 0.318 1.409 1.469 sum -0.551 12.673 -9.887 16.083 Atomic orbital electron populations 1.22893 0.89662 1.01560 1.02054 1.68533 1.09157 1.18113 1.24077 1.23910 0.97390 0.91321 1.00409 1.23364 0.98371 0.97045 0.98927 1.23708 0.97549 0.95483 0.92014 0.89582 1.21197 0.89250 0.86195 1.02191 1.55485 1.17940 1.24652 1.89509 1.01670 0.73638 0.71770 0.74361 1.93525 1.73749 1.84807 1.43802 1.93549 1.45392 1.70894 1.86306 1.29970 1.09238 1.16958 1.15225 1.20052 0.90947 1.08603 0.98792 1.20679 0.97825 0.98823 0.93510 1.21251 0.95648 1.08100 0.97456 1.17775 0.91314 0.91406 0.92604 1.19563 1.03071 1.26087 0.97898 0.88697 1.26208 0.98018 0.95613 0.93931 1.69679 1.37048 1.30608 1.04567 0.86333 0.80163 0.78055 0.81725 1.19496 1.21508 1.16552 1.20789 0.98876 1.02082 0.90907 0.94771 0.91109 0.91126 0.91338 0.89229 0.90549 0.88482 0.90630 0.89370 0.75597 0.87030 0.87939 0.87744 0.90084 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.06 0.58 0.47 16 2 N -0.48 -4.91 6.36 -238.96 -1.52 -6.43 16 3 C 0.00 -0.01 7.97 -2.77 -0.02 -0.03 16 4 C -0.14 -1.10 7.85 -25.80 -0.20 -1.30 16 5 C 0.02 0.23 3.38 -66.65 -0.23 0.00 16 6 H 0.09 0.76 7.93 -51.93 -0.41 0.35 16 7 C 0.14 1.68 6.26 -4.04 -0.03 1.65 16 8 N -1.12 -15.30 6.00 -10.61 -0.06 -15.36 16 9 S 2.69 48.60 5.73 -107.50 -0.62 47.98 16 10 O -0.97 -19.32 16.74 -57.17 -0.96 -20.28 16 11 O -0.97 -19.91 17.27 -57.17 -0.99 -20.90 16 12 C -0.62 -12.85 5.94 -39.66 -0.24 -13.09 16 13 C -0.16 -3.28 9.53 -39.29 -0.37 -3.66 16 14 C -0.09 -1.85 10.02 -39.66 -0.40 -2.25 16 15 C -0.21 -4.75 7.16 -38.87 -0.28 -5.03 16 16 C 0.07 1.80 5.21 -106.83 -0.56 1.25 16 17 C -0.44 -11.45 9.59 -37.74 -0.36 -11.82 16 18 H 0.10 2.56 8.06 -52.49 -0.42 2.14 16 19 C 0.08 2.10 5.42 -17.34 -0.09 2.00 16 20 N -0.80 -20.38 13.93 55.55 0.77 -19.61 16 21 Si 0.91 20.08 24.43 -169.99 -4.15 15.93 16 22 H -0.27 -5.66 6.65 56.52 0.38 -5.28 16 23 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 24 H -0.24 -5.54 6.78 56.52 0.38 -5.15 16 25 C -0.11 -2.42 9.26 -38.87 -0.36 -2.78 16 26 H 0.03 0.26 7.62 -51.93 -0.40 -0.13 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 29 H 0.07 0.46 7.62 -51.93 -0.40 0.06 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.09 1.14 7.75 -51.93 -0.40 0.74 16 35 H 0.41 4.76 8.37 -34.47 -0.29 4.48 16 36 H 0.11 2.00 7.60 -52.48 -0.40 1.60 16 37 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.10 2.38 4.21 -52.48 -0.22 2.15 16 39 H 0.29 6.65 8.30 -40.82 -0.34 6.31 16 40 H 0.12 2.61 7.60 -52.49 -0.40 2.21 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -31.02 339.83 -10.41 -41.43 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.46 Total: 6.69 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: -2.55 Total: -34.58 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.81 Total: -41.39 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -1.94 Total: -41.18 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.15 Total: 15.93 kcal Atomic # 16 Polarization: 48.60 SS G_CDS: -0.62 Total: 47.98 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.02 -10.41 -41.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921413021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.120 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds