Wall clock time and date at job start Tue Mar 31 2020 03:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47094 * 2 1 4 4 C 1.33814 * 124.52152 * 89.97917 * 3 2 1 5 5 C 1.37477 * 115.09811 * 180.02562 * 4 3 2 6 6 C 1.36641 * 113.29948 * 0.02562 * 5 4 3 7 7 C 1.46584 * 125.45936 * 179.97438 * 6 5 4 8 8 O 1.21703 * 119.99830 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99812 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99771 * 180.02562 * 9 7 6 11 11 H 1.09004 * 110.88966 * 34.30086 * 10 9 7 12 12 C 1.54912 * 111.00596 * 270.42063 * 10 9 7 13 13 N 1.47465 * 104.81306 * 204.95146 * 12 10 9 14 14 C 1.36946 * 125.62675 * 204.14461 * 13 12 10 15 15 H 1.07994 * 120.00319 * 359.93826 * 14 13 12 16 16 C 1.38811 * 119.99597 * 179.97438 * 14 13 12 17 17 N 1.31616 * 120.00364 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99752 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46779 * 60.00403 * 18 16 14 20 20 H 1.48506 * 109.47014 * 179.97438 * 18 16 14 21 21 H 1.48490 * 109.47396 * 300.00304 * 18 16 14 22 22 C 1.47018 * 108.72686 * 24.06723 * 13 12 10 23 23 C 1.54333 * 107.26699 * 358.97733 * 22 13 12 24 24 H 1.08997 * 110.71802 * 96.16824 * 23 22 13 25 25 O 1.42897 * 110.86925 * 219.37062 * 23 22 13 26 26 S 1.70620 * 124.52019 * 270.02284 * 3 2 1 27 27 H 1.09003 * 109.46795 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47322 * 300.00124 * 1 2 3 29 29 H 1.09000 * 109.46909 * 60.00128 * 1 2 3 30 30 H 1.08996 * 109.47322 * 239.99876 * 2 1 3 31 31 H 1.09000 * 109.46909 * 119.99872 * 2 1 3 32 32 H 1.08001 * 122.45283 * 0.02562 * 4 3 2 33 33 H 1.08006 * 123.34704 * 180.02562 * 5 4 3 34 34 H 0.96996 * 120.00577 * 0.02562 * 9 7 6 35 35 H 1.09001 * 110.36725 * 323.75581 * 12 10 9 36 36 H 1.09001 * 110.36790 * 86.07258 * 12 10 9 37 37 H 0.96999 * 120.00249 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.88814 * 239.56334 * 22 13 12 39 39 H 1.08999 * 109.88462 * 118.38921 * 22 13 12 40 40 H 0.96701 * 114.00405 * 293.60745 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2848 2.1359 1.1025 5 6 2.7364 3.4148 0.8774 6 6 2.8451 3.7239 -0.4491 7 6 3.2984 5.0094 -0.9883 8 8 3.6153 5.9087 -0.2321 9 7 3.3642 5.1953 -2.3216 10 6 3.8178 6.4798 -2.8605 11 1 4.5822 6.9214 -2.2211 12 6 2.6274 7.4518 -3.0550 13 7 3.0700 8.3839 -4.1086 14 6 2.5952 9.6539 -4.3011 15 1 1.8295 10.0486 -3.6499 16 6 3.0976 10.4335 -5.3339 17 7 4.0299 9.9520 -6.1284 18 14 2.4494 12.1656 -5.5970 19 1 2.7001 12.9781 -4.3796 20 1 3.1437 12.7833 -6.7554 21 1 0.9898 12.1126 -5.8649 22 6 4.1064 7.7250 -4.9167 23 6 4.3331 6.3218 -4.3154 24 1 3.7498 5.5735 -4.8519 25 8 5.7209 5.9815 -4.3261 26 16 2.3541 2.3326 -1.4058 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1440 1.7376 2.0965 33 1 2.9809 4.1062 1.6703 34 1 3.1113 4.4787 -2.9243 35 1 1.7413 6.9063 -3.3795 36 1 2.4238 7.9922 -2.1305 37 1 4.3812 10.4969 -6.8499 38 1 5.0313 8.3002 -4.8742 39 1 3.7701 7.6357 -5.9497 40 1 6.0920 5.8711 -5.2122 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077324921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:24 Heat of formation + Delta-G solvation = -30.152647 kcal Electronic energy + Delta-G solvation = -22933.432986 eV Core-core repulsion = 19454.469703 eV Total energy + Delta-G solvation = -3478.963283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 310.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77781 -38.36106 -37.56488 -35.07812 -34.07274 -34.02073 -31.74709 -29.36081 -28.20596 -27.04040 -25.43643 -24.29053 -22.64955 -21.70824 -20.57888 -20.23654 -19.22719 -18.06012 -17.09317 -16.73864 -16.23837 -15.71414 -15.25718 -14.86134 -14.64268 -14.46020 -14.11214 -14.04982 -13.63301 -13.28953 -13.00258 -12.68340 -12.56619 -12.48531 -12.16795 -12.05831 -11.86134 -11.51822 -11.46868 -11.25471 -11.04663 -10.90415 -10.79270 -10.20324 -9.97046 -9.91406 -9.83831 -9.35038 -8.98008 -8.78897 -8.74570 -8.61874 -6.91646 -5.75981 -3.10587 0.36715 1.27005 1.69537 2.26018 3.22972 3.29826 3.40768 3.44615 3.46079 4.32578 4.43760 4.61015 4.63994 4.84358 4.87022 5.04694 5.17541 5.20722 5.34583 5.43586 5.44290 5.55686 5.56760 5.65079 5.78917 5.79170 5.82916 5.97253 6.08807 6.11356 6.19308 6.47951 6.61520 6.85677 7.32000 7.45975 7.60461 7.73321 8.10827 8.17152 8.30590 9.15271 9.75196 10.38189 11.35814 Molecular weight = 310.11amu Principal moments of inertia in cm(-1) A = 0.025789 B = 0.002902 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.478664 B = 9647.823525 C = 9869.520670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.055 4.055 3 C -0.196 4.196 4 C -0.152 4.152 5 C -0.056 4.056 6 C -0.258 4.258 7 C 0.588 3.412 8 O -0.526 6.526 9 N -0.710 5.710 10 C 0.139 3.861 11 H 0.107 0.893 12 C 0.130 3.870 13 N -0.600 5.600 14 C -0.229 4.229 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.925 5.925 18 Si 0.916 3.084 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.154 3.846 23 C 0.068 3.932 24 H 0.057 0.943 25 O -0.563 6.563 26 S 0.198 5.802 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.394 0.606 35 H 0.024 0.976 36 H 0.052 0.948 37 H 0.254 0.746 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -22.035 8.805 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.316 4.316 4 C -0.183 4.183 5 C -0.089 4.089 6 C -0.379 4.379 7 C 0.374 3.626 8 O -0.404 6.404 9 N -0.360 5.360 10 C 0.034 3.966 11 H 0.125 0.875 12 C 0.003 3.997 13 N -0.328 5.328 14 C -0.357 4.357 15 H 0.098 0.902 16 C -0.203 4.203 17 N -0.572 5.572 18 Si 0.746 3.254 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.029 3.971 23 C 0.008 3.992 24 H 0.075 0.925 25 O -0.367 6.367 26 S 0.466 5.534 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.160 0.840 33 H 0.171 0.829 34 H 0.228 0.772 35 H 0.042 0.958 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.842 -21.439 8.258 23.293 hybrid contribution -0.280 0.778 0.467 0.950 sum -4.122 -20.661 8.725 22.803 Atomic orbital electron populations 1.21810 0.94039 1.02138 1.02729 1.20146 0.96387 0.89399 1.03474 1.24244 1.07425 1.02070 0.97833 1.19940 1.04714 0.94128 0.99505 1.20755 0.96679 0.96196 0.95264 1.24673 1.15843 0.99301 0.98049 1.16930 0.77741 0.85497 0.82436 1.90847 1.48972 1.42651 1.57924 1.45803 1.67668 1.16512 1.06020 1.22313 0.97718 0.82644 0.93922 0.87541 1.21861 0.93483 0.91099 0.93306 1.44248 1.44248 1.12327 1.31932 1.19051 1.17136 0.87876 1.11642 0.90157 1.24815 0.98798 0.98792 0.97942 1.69907 1.30674 1.36417 1.20209 0.86137 0.78081 0.83826 0.77357 1.21027 1.21552 1.21101 1.21819 0.94167 0.86911 0.94216 1.23460 0.81804 0.98679 0.95240 0.92492 1.86469 1.24198 1.92712 1.33367 1.82974 1.60032 1.02644 1.07765 0.91900 0.92140 0.92283 0.90622 0.89850 0.83968 0.82923 0.77240 0.95800 0.92988 0.93585 0.92028 0.93218 0.77624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.90 37.16 0.37 -0.49 16 2 C -0.05 -0.34 6.37 -27.88 -0.18 -0.52 16 3 C -0.20 -1.74 5.53 -35.86 -0.20 -1.93 16 4 C -0.15 -1.44 10.00 -41.41 -0.41 -1.85 16 5 C -0.06 -0.67 10.01 -40.44 -0.40 -1.07 16 6 C -0.26 -3.44 6.45 -36.79 -0.24 -3.68 16 7 C 0.59 9.92 7.78 -12.90 -0.10 9.82 16 8 O -0.53 -10.81 16.53 5.19 0.09 -10.73 16 9 N -0.71 -11.42 5.21 -53.06 -0.28 -11.69 16 10 C 0.14 2.71 3.09 -65.78 -0.20 2.50 16 11 H 0.11 2.36 7.63 -51.93 -0.40 1.97 16 12 C 0.13 2.84 6.93 -2.51 -0.02 2.83 16 13 N -0.60 -15.52 3.40 -170.04 -0.58 -16.10 16 14 C -0.23 -6.45 10.28 -15.06 -0.15 -6.61 16 15 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 16 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 17 N -0.92 -26.87 10.31 55.49 0.57 -26.30 16 18 Si 0.92 22.20 29.55 -169.99 -5.02 17.17 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.15 3.68 5.15 -3.06 -0.02 3.67 16 23 C 0.07 1.28 3.96 -24.89 -0.10 1.18 16 24 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 25 O -0.56 -9.83 13.40 -35.23 -0.47 -10.30 16 26 S 0.20 1.96 22.10 -107.50 -2.38 -0.41 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.15 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.39 5.24 7.65 -40.82 -0.31 4.93 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.06 1.65 7.30 -51.93 -0.38 1.28 16 39 H 0.05 1.27 7.50 -51.93 -0.39 0.88 16 40 H 0.38 4.95 9.12 45.56 0.42 5.36 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -33.52 349.21 -9.38 -42.91 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -4.83 Total: 6.65 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.75 Total: 3.54 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.28 Total: -54.09 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.39 Total: -21.03 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.38 Total: -0.41 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.52 -9.38 -42.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077324921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.754 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds