Wall clock time and date at job start Tue Mar 31 2020 04:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00031 * 2 1 4 4 H 1.48499 * 109.47108 * 269.99903 * 3 2 1 5 5 H 1.48499 * 109.46994 * 29.99931 * 3 2 1 6 6 H 1.48498 * 109.47185 * 149.99700 * 3 2 1 7 7 C 1.38810 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99693 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.47747 * 125.82252 * 14.22731 * 9 7 2 11 11 C 1.54914 * 104.83955 * 155.83124 * 10 9 7 12 12 C 1.55154 * 101.57946 * 37.09452 * 11 10 9 13 13 C 1.47026 * 125.64722 * 194.32351 * 9 7 2 14 14 H 1.09005 * 109.87884 * 300.59347 * 13 9 7 15 15 C 1.52999 * 109.88455 * 61.60231 * 13 9 7 16 16 N 1.46496 * 109.47120 * 182.57156 * 15 13 9 17 17 C 1.34781 * 120.00279 * 185.13475 * 16 15 13 18 18 O 1.21287 * 119.99569 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00387 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.46528 * 40.01848 * 19 17 16 21 21 C 1.53042 * 109.46294 * 280.04878 * 19 17 16 22 22 C 1.50800 * 109.18253 * 286.68137 * 21 19 17 23 23 O 1.21236 * 120.01647 * 145.79571 * 22 21 19 24 24 N 1.34561 * 119.96760 * 325.76293 * 22 21 19 25 25 C 1.34334 * 120.98663 * 4.44334 * 24 22 21 26 26 O 1.21541 * 119.20833 * 192.03854 * 25 24 22 27 27 N 1.34294 * 121.58530 * 12.01412 * 25 24 22 28 28 H 0.96999 * 119.99498 * 0.02562 * 1 2 3 29 29 H 1.08991 * 110.28969 * 37.02858 * 10 9 7 30 30 H 1.09001 * 110.52357 * 274.75615 * 10 9 7 31 31 H 1.08999 * 111.00296 * 279.01867 * 11 10 9 32 32 H 1.08997 * 111.03491 * 155.18147 * 11 10 9 33 33 H 1.09001 * 110.71873 * 206.13115 * 12 11 10 34 34 H 1.09005 * 110.72356 * 82.86282 * 12 11 10 35 35 H 1.09007 * 109.46744 * 62.57415 * 15 13 9 36 36 H 1.08996 * 109.46844 * 302.57555 * 15 13 9 37 37 H 0.96997 * 120.00283 * 5.13649 * 16 15 13 38 38 H 1.09001 * 109.51794 * 46.59560 * 21 19 17 39 39 H 1.08994 * 109.51563 * 166.70677 * 21 19 17 40 40 H 0.96995 * 119.50561 * 184.71216 * 24 22 21 41 41 H 0.96997 * 119.53668 * 185.67589 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1123 -2.5564 -0.2944 11 6 -0.2505 -4.0239 -0.7710 12 6 0.7677 -4.7474 0.1495 13 6 1.8996 -3.7089 0.2966 14 1 2.7007 -3.9313 -0.4082 15 6 2.4437 -3.7311 1.7264 16 7 3.0678 -5.0298 1.9912 17 6 3.5269 -5.3178 3.2253 18 8 3.4228 -4.5020 4.1167 19 6 4.1694 -6.6534 3.4975 20 1 4.7983 -6.9330 2.6523 21 6 3.0817 -7.7117 3.6955 22 6 2.4271 -7.5043 5.0381 23 8 1.2458 -7.7378 5.1794 24 7 3.1548 -7.0606 6.0793 25 6 4.4429 -6.7123 5.9244 26 8 5.1303 -6.5286 6.9098 27 7 4.9896 -6.5627 4.7069 28 1 -0.4849 0.8401 -0.0004 29 1 -0.4189 -1.8706 -1.0841 30 1 -0.7084 -2.3912 0.6031 31 1 0.0317 -4.1225 -1.8192 32 1 -1.2612 -4.3960 -0.6040 33 1 1.1377 -5.6566 -0.3244 34 1 0.3208 -4.9707 1.1184 35 1 1.6257 -3.5711 2.4290 36 1 3.1848 -2.9408 1.8455 37 1 3.1508 -5.6824 1.2784 38 1 2.3344 -7.6177 2.9075 39 1 3.5287 -8.7050 3.6568 40 1 2.7442 -6.9949 6.9556 41 1 5.9411 -6.3920 4.6277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028171921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:59 Heat of formation + Delta-G solvation = -70.374358 kcal Electronic energy + Delta-G solvation = -26280.813188 eV Core-core repulsion = 22389.645641 eV Total energy + Delta-G solvation = -3891.167547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.06274 -39.60704 -39.05712 -37.75456 -36.04520 -34.52508 -34.47809 -32.56092 -31.40589 -29.74479 -28.81019 -26.29505 -24.83102 -23.84941 -23.62587 -21.36228 -20.36200 -20.04047 -19.59688 -18.47871 -18.18560 -17.36989 -16.88499 -16.54733 -16.17146 -15.82383 -15.40339 -15.08939 -14.80318 -14.61049 -14.42641 -14.00596 -13.84327 -13.55903 -13.30102 -12.77498 -12.64301 -12.15013 -11.96309 -11.82625 -11.40162 -11.05749 -11.00231 -10.83371 -10.62816 -10.51375 -10.43986 -10.34222 -10.15591 -10.00766 -9.89812 -9.78309 -9.40948 -8.87982 -8.64884 -6.91486 -5.82647 -3.19820 1.44278 2.14349 2.47562 2.65346 2.96381 3.19312 3.36159 3.42393 3.43738 3.87040 4.03980 4.36922 4.46847 4.51308 4.70636 4.89603 5.24919 5.31224 5.41498 5.54435 5.58719 5.72688 5.93038 5.94657 6.03368 6.15315 6.37208 6.42220 6.42824 6.47050 6.59751 6.69399 6.93890 6.96922 7.20896 7.44711 7.48754 7.55030 7.73104 7.90957 8.14601 8.19931 9.10351 9.71404 10.38265 11.29258 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.003566 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.964204 B = 7849.921387 C = 8720.657754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.001 3.999 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.107 3.893 16 N -0.714 5.714 17 C 0.481 3.519 18 O -0.521 6.521 19 C 0.119 3.881 20 H 0.135 0.865 21 C -0.149 4.149 22 C 0.525 3.475 23 O -0.495 6.495 24 N -0.670 5.670 25 C 0.726 3.274 26 O -0.557 6.557 27 N -0.706 5.706 28 H 0.255 0.745 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.427 0.573 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 -19.124 2.018 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.197 4.197 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.365 5.365 17 C 0.263 3.737 18 O -0.396 6.396 19 C 0.009 3.991 20 H 0.153 0.847 21 C -0.190 4.190 22 C 0.312 3.688 23 O -0.366 6.366 24 N -0.339 5.339 25 C 0.426 3.574 26 O -0.431 6.431 27 N -0.364 5.364 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.269 0.731 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 6.992 -18.308 3.089 19.840 hybrid contribution 0.655 0.847 -0.019 1.071 sum 7.647 -17.461 3.069 19.308 Atomic orbital electron populations 1.69934 1.05050 1.25428 1.55556 1.24916 0.95673 0.97909 1.01199 0.86149 0.78820 0.83377 0.77595 1.21462 1.21539 1.20521 1.18964 0.90359 0.82147 1.45063 0.90623 1.44568 1.06159 1.00905 1.79615 1.21523 0.84660 0.90280 0.98926 1.22996 0.97596 0.99529 0.98583 1.22618 0.97126 0.96935 0.99812 1.21136 0.94527 0.88278 0.91716 0.94444 1.22356 0.97507 0.82238 0.99645 1.46138 1.60273 1.19613 1.10503 1.20911 0.80031 0.89080 0.83686 1.90797 1.55473 1.49079 1.44275 1.21141 0.94054 0.93585 0.90302 0.84717 1.22245 0.99396 1.01247 0.96100 1.20749 0.86736 0.75096 0.86231 1.90819 1.14646 1.47115 1.84069 1.44134 1.12073 1.63049 1.14690 1.15502 0.81243 0.76644 0.83999 1.91038 1.59671 1.55491 1.36919 1.44715 1.12488 1.76195 1.03052 0.93519 0.90862 0.95570 0.92249 0.92268 0.92299 0.91793 0.91460 0.91303 0.76925 0.85004 0.85407 0.73118 0.73255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.17 10.59 55.49 0.59 -25.58 16 2 C 0.00 0.02 5.47 -17.43 -0.10 -0.08 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.24 -6.29 9.76 -15.06 -0.15 -6.44 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.59 -13.97 3.14 -162.31 -0.51 -14.48 16 10 C 0.17 3.93 5.44 -2.35 -0.01 3.92 16 11 C -0.15 -2.56 7.09 -24.58 -0.17 -2.73 16 12 C -0.13 -1.91 6.10 -24.90 -0.15 -2.06 16 13 C 0.15 2.74 3.21 -66.95 -0.21 2.52 16 14 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 15 C 0.11 1.88 5.07 -4.04 -0.02 1.86 16 16 N -0.71 -8.43 5.33 -60.30 -0.32 -8.75 16 17 C 0.48 5.95 6.71 -10.99 -0.07 5.87 16 18 O -0.52 -9.34 16.14 5.55 0.09 -9.25 16 19 C 0.12 0.81 3.63 -69.11 -0.25 0.56 16 20 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 21 C -0.15 -0.90 5.71 -27.81 -0.16 -1.06 16 22 C 0.52 5.63 7.44 -11.03 -0.08 5.55 16 23 O -0.50 -6.98 17.93 5.60 0.10 -6.87 16 24 N -0.67 -7.38 5.18 -16.02 -0.08 -7.46 16 25 C 0.73 8.58 7.98 -87.75 -0.70 7.88 16 26 O -0.56 -8.41 17.97 5.33 0.10 -8.32 16 27 N -0.71 -6.05 4.91 -60.11 -0.29 -6.34 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 30 H 0.03 0.66 8.08 -51.93 -0.42 0.25 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.97 7.81 -51.93 -0.41 0.57 16 35 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 36 H 0.07 1.40 7.91 -51.93 -0.41 0.99 16 37 H 0.40 3.11 8.34 -40.82 -0.34 2.77 16 38 H 0.13 0.68 8.07 -51.93 -0.42 0.26 16 39 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.43 4.41 8.86 -40.82 -0.36 4.05 16 41 H 0.43 2.87 8.90 -40.82 -0.36 2.51 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -37.21 343.61 -7.84 -45.05 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.58 Total: 4.33 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: -2.08 Total: 15.79 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -0.62 Total: -62.61 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.29 Total: -24.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.21 -7.84 -45.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028171921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.322 kcal (2) G-P(sol) polarization free energy of solvation -37.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds