Wall clock time and date at job start Tue Mar 31 2020 04:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00000 * 2 1 4 4 H 1.48495 * 109.47289 * 270.00173 * 3 2 1 5 5 H 1.48504 * 109.46864 * 30.00091 * 3 2 1 6 6 H 1.48497 * 109.47171 * 149.99719 * 3 2 1 7 7 C 1.37875 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00569 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00082 * 179.97438 * 7 2 1 10 10 N 1.46495 * 109.47333 * 180.02562 * 9 7 2 11 11 C 1.34783 * 120.00065 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99766 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00009 * 180.02562 * 11 10 9 14 14 N 1.46898 * 109.46755 * 180.02562 * 13 11 10 15 15 C 1.46208 * 111.00393 * 61.95528 * 14 13 11 16 16 C 1.53276 * 110.61209 * 97.42237 * 15 14 13 17 17 N 1.48199 * 107.18163 * 64.26081 * 16 15 14 18 18 C 1.34160 * 122.21049 * 145.50601 * 17 16 15 19 19 O 1.21352 * 120.49182 * 354.76668 * 18 17 16 20 20 C 1.47808 * 119.45019 * 172.92036 * 18 17 16 21 21 O 1.21351 * 120.26331 * 169.27437 * 20 18 17 22 22 N 1.34817 * 119.10181 * 351.11833 * 20 18 17 23 23 C 1.46223 * 120.35806 * 351.11373 * 22 20 18 24 24 C 1.46951 * 116.77749 * 325.26574 * 17 16 15 25 25 H 1.08995 * 109.74172 * 95.60914 * 24 17 16 26 26 C 1.46111 * 110.99679 * 189.99886 * 14 13 11 27 27 H 0.96997 * 119.99925 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46856 * 60.00271 * 9 7 2 29 29 H 1.09000 * 109.47329 * 300.00704 * 9 7 2 30 30 H 0.97002 * 120.00356 * 0.02562 * 10 9 7 31 31 H 1.08997 * 109.46922 * 59.99731 * 13 11 10 32 32 H 1.08992 * 109.46989 * 300.00159 * 13 11 10 33 33 H 1.08996 * 109.25323 * 217.71945 * 15 14 13 34 34 H 1.09009 * 109.24798 * 337.13645 * 15 14 13 35 35 H 1.08998 * 109.87635 * 182.91299 * 16 15 14 36 36 H 1.08996 * 109.87344 * 303.96988 * 16 15 14 37 37 H 0.97001 * 119.82524 * 171.40099 * 22 20 18 38 38 H 1.08996 * 109.21659 * 158.87775 * 23 22 20 39 39 H 1.09001 * 109.21922 * 278.21014 * 23 22 20 40 40 H 1.09004 * 109.13130 * 80.20198 * 26 14 13 41 41 H 1.09003 * 109.13082 * 321.08817 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 5.3250 -2.8215 0.0001 12 8 6.1131 -1.8996 0.0006 13 6 5.8274 -4.2423 -0.0003 14 7 7.2964 -4.2422 0.0005 15 6 7.8197 -3.6010 1.2057 16 6 8.1857 -4.6515 2.2602 17 7 9.2912 -5.4655 1.7020 18 6 10.2706 -5.9647 2.4711 19 8 10.3322 -5.6828 3.6498 20 6 11.2545 -6.8966 1.8809 21 8 12.2521 -7.2049 2.4992 22 7 11.0461 -7.3675 0.6350 23 6 9.7761 -7.1196 -0.0460 24 6 9.2666 -5.7107 0.2533 25 1 9.8925 -4.9772 -0.2549 26 6 7.8201 -5.5854 -0.2368 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.3696 -3.3126 0.0001 31 1 5.4641 -4.7558 -0.8905 32 1 5.4639 -4.7564 0.8894 33 1 8.7085 -3.0246 0.9492 34 1 7.0630 -2.9309 1.6138 35 1 8.5255 -4.1592 3.1714 36 1 7.3194 -5.2765 2.4768 37 1 11.7409 -7.8772 0.1894 38 1 9.9183 -7.2287 -1.1212 39 1 9.0390 -7.8473 0.2933 40 1 7.7851 -5.7990 -1.3051 41 1 7.1998 -6.3093 0.2918 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333479607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:05 Heat of formation + Delta-G solvation = -71.684773 kcal Electronic energy + Delta-G solvation = -25743.806643 eV Core-core repulsion = 21852.582272 eV Total energy + Delta-G solvation = -3891.224371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74903 -39.89785 -38.75893 -38.22217 -36.48896 -34.43035 -34.09236 -32.43469 -31.95379 -30.06805 -28.47685 -26.93583 -25.89383 -24.40660 -23.73238 -22.06833 -20.65595 -19.89742 -18.99677 -18.61673 -18.05840 -17.37521 -17.19539 -16.60965 -16.09293 -15.83447 -15.67233 -15.23206 -15.01730 -14.71864 -14.57708 -14.31774 -14.05644 -13.81655 -13.38915 -13.03382 -12.85796 -12.67258 -12.55417 -12.44836 -12.34420 -12.11940 -11.74124 -11.65405 -11.46869 -11.07318 -10.80402 -10.07884 -10.02583 -9.88761 -9.56321 -9.31243 -9.28889 -8.83512 -8.45369 -8.23081 -6.27014 -4.29879 0.96757 2.10099 2.43099 2.84542 3.09058 3.20907 3.23272 3.30594 3.37387 3.69529 3.90011 4.04368 4.14341 4.28372 4.38919 4.51179 4.68550 4.81848 4.85419 4.99417 5.08152 5.13465 5.15152 5.25815 5.30725 5.34779 5.41608 5.68021 5.95340 6.00693 6.27088 6.57935 6.68701 6.76529 6.81526 6.99902 7.10583 7.12976 7.32005 7.61667 8.05899 8.42623 8.68418 8.83243 9.32795 10.84843 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.035905 B = 0.002557 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.645304 B =10946.202566 C =11267.852309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.706 5.706 11 C 0.498 3.502 12 O -0.540 6.540 13 C 0.037 3.963 14 N -0.529 5.529 15 C 0.052 3.948 16 C 0.080 3.920 17 N -0.598 5.598 18 C 0.511 3.489 19 O -0.490 6.490 20 C 0.517 3.483 21 O -0.488 6.488 22 N -0.716 5.716 23 C 0.100 3.900 24 C 0.118 3.882 25 H 0.100 0.900 26 C 0.062 3.938 27 H 0.268 0.732 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.396 0.604 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.936 -16.937 -3.371 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.355 5.355 11 C 0.282 3.718 12 O -0.419 6.419 13 C -0.093 4.093 14 N -0.253 5.253 15 C -0.076 4.076 16 C -0.042 4.042 17 N -0.337 5.337 18 C 0.293 3.707 19 O -0.362 6.362 20 C 0.298 3.702 21 O -0.359 6.359 22 N -0.375 5.375 23 C -0.026 4.026 24 C 0.014 3.986 25 H 0.118 0.882 26 C -0.066 4.066 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.230 0.770 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.249 0.751 38 H 0.130 0.870 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.919 -15.754 -2.592 24.000 hybrid contribution -0.178 -0.172 0.249 0.350 sum 17.742 -15.925 -2.344 23.955 Atomic orbital electron populations 1.69876 1.06237 1.27501 1.49258 1.24802 0.94794 0.99217 0.93820 0.86809 0.80540 0.83213 0.79067 1.19834 1.20910 1.18510 1.21077 0.88513 0.95205 1.53524 0.90270 1.19483 0.95229 0.78491 0.96797 1.46184 1.05586 1.11158 1.72562 1.20290 0.83196 0.90492 0.77772 1.90672 1.55266 1.45925 1.49998 1.22052 0.87884 0.96260 1.03139 1.60450 1.06361 1.19479 1.39022 1.22479 1.02657 0.95303 0.87152 1.22696 0.88455 0.93768 0.99322 1.48690 1.24847 1.52192 1.07977 1.19602 0.81859 0.82164 0.87065 1.90813 1.72028 1.58263 1.15064 1.19944 0.87001 0.81559 0.81716 1.90840 1.27691 1.57192 1.60144 1.45969 1.18742 1.57056 1.15724 1.21834 0.85609 0.95692 0.99439 1.21795 0.98859 0.97081 0.80883 0.88179 1.22112 0.92115 0.89950 1.02448 0.92209 0.95729 0.96102 0.77043 0.87755 0.91911 0.89600 0.88076 0.88292 0.90745 0.75058 0.87041 0.90231 0.88292 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.96 55.43 0.77 -25.01 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.55 -14.29 9.83 -34.44 -0.34 -14.63 16 8 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 9 C 0.22 5.12 4.50 -5.20 -0.02 5.10 16 10 N -0.71 -12.70 5.55 -61.47 -0.34 -13.04 16 11 C 0.50 8.07 7.17 -10.98 -0.08 7.99 16 12 O -0.54 -10.80 14.52 5.56 0.08 -10.72 16 13 C 0.04 0.39 5.30 -4.98 -0.03 0.36 16 14 N -0.53 -5.17 4.55 -236.99 -1.08 -6.25 16 15 C 0.05 0.57 4.91 -4.06 -0.02 0.55 16 16 C 0.08 0.77 6.22 -2.96 -0.02 0.75 16 17 N -0.60 -5.44 3.13 -165.57 -0.52 -5.95 16 18 C 0.51 6.13 7.59 -12.62 -0.10 6.04 16 19 O -0.49 -7.87 16.70 -11.27 -0.19 -8.06 16 20 C 0.52 5.54 7.86 -12.33 -0.10 5.45 16 21 O -0.49 -7.14 17.79 -11.27 -0.20 -7.34 16 22 N -0.72 -3.98 5.63 -61.60 -0.35 -4.33 16 23 C 0.10 0.29 6.47 -4.31 -0.03 0.27 16 24 C 0.12 0.67 3.08 -67.67 -0.21 0.46 16 25 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 26 C 0.06 0.35 4.72 -4.13 -0.02 0.33 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 29 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 30 H 0.40 6.13 8.32 -40.82 -0.34 5.80 16 31 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.34 5.85 -51.92 -0.30 1.04 16 35 H 0.10 1.07 7.47 -51.93 -0.39 0.69 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.41 1.47 8.93 -40.82 -0.36 1.11 16 38 H 0.11 -0.03 8.14 -51.93 -0.42 -0.45 16 39 H 0.08 0.19 8.08 -51.93 -0.42 -0.23 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.24 7.89 -51.93 -0.41 -0.17 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -36.50 337.56 -7.98 -44.48 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.53 Total: 0.30 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: -1.05 Total: 14.69 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -1.51 Total: -54.58 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.31 Total: -26.12 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.50 -7.98 -44.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333479607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.205 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds