Wall clock time and date at job start Tue Mar 31 2020 04:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00080 * 2 1 4 4 C 1.53000 * 109.46737 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47420 * 65.00159 * 4 3 2 6 6 C 1.34773 * 120.00522 * 179.97438 * 5 4 3 7 7 O 1.21368 * 119.99994 * 359.97438 * 6 5 4 8 8 C 1.49304 * 120.00278 * 180.02562 * 6 5 4 9 9 O 1.21392 * 119.99967 * 359.97438 * 8 6 5 10 10 N 1.34777 * 120.00068 * 180.02562 * 8 6 5 11 11 C 1.39199 * 120.00053 * 179.97438 * 10 8 6 12 12 C 1.36219 * 126.27080 * 0.17906 * 11 10 8 13 13 C 1.39696 * 107.85485 * 180.26645 * 12 11 10 14 14 C 1.50701 * 125.76897 * 179.71308 * 13 12 11 15 15 N 1.30848 * 108.46002 * 359.73545 * 13 12 11 16 16 N 1.35860 * 126.27188 * 179.97438 * 11 10 8 17 17 C 1.46491 * 126.09683 * 359.97438 * 16 11 10 18 18 C 1.50702 * 109.46957 * 269.71194 * 17 16 11 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99985 * 180.27663 * 20 18 17 22 22 Si 1.86800 * 119.99777 * 0.28166 * 20 18 17 23 23 H 1.48498 * 109.47109 * 89.99834 * 22 20 18 24 24 H 1.48507 * 109.46754 * 209.99574 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99405 * 22 20 18 26 26 H 1.08998 * 109.46721 * 59.99893 * 1 2 3 27 27 H 1.08991 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46897 * 300.00338 * 1 2 3 29 29 H 1.09002 * 109.47061 * 60.00381 * 3 2 1 30 30 H 1.09001 * 109.47018 * 299.99509 * 3 2 1 31 31 H 1.08996 * 109.47787 * 304.99775 * 4 3 2 32 32 H 1.09006 * 109.47380 * 184.99713 * 4 3 2 33 33 H 0.97008 * 119.99878 * 359.97438 * 5 4 3 34 34 H 0.96999 * 120.00308 * 359.97438 * 10 8 6 35 35 H 1.07999 * 126.07160 * 0.02562 * 12 11 10 36 36 H 1.08998 * 109.47246 * 270.00352 * 14 13 12 37 37 H 1.09002 * 109.47095 * 30.00331 * 14 13 12 38 38 H 1.09001 * 109.46834 * 149.99902 * 14 13 12 39 39 H 1.09004 * 109.47166 * 149.71460 * 17 16 11 40 40 H 1.08994 * 109.47507 * 29.71166 * 17 16 11 41 41 H 0.96996 * 119.99730 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 5.2895 0.3558 -1.4738 7 8 6.1063 0.6830 -0.6378 8 6 5.7392 -0.2763 -2.7495 9 8 4.9223 -0.6032 -3.5858 10 7 7.0520 -0.4848 -2.9721 11 6 7.4712 -1.0746 -4.1613 12 6 6.6698 -1.4853 -5.1834 13 6 7.4881 -2.0246 -6.1790 14 6 7.0171 -2.6055 -7.4873 15 7 8.7324 -1.9405 -5.7832 16 7 8.7548 -1.3424 -4.5168 17 6 9.9487 -1.0613 -3.7159 18 6 10.4635 0.3157 -4.0479 19 1 9.9521 0.9210 -4.7817 20 6 11.5837 0.8052 -3.4101 21 7 12.0297 2.0089 -3.6958 22 14 12.4679 -0.2416 -2.1405 23 1 13.5112 -1.0578 -2.8117 24 1 13.1038 0.6398 -1.1285 25 1 11.4915 -1.1387 -1.4719 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8508 0.5684 0.8427 32 1 3.9786 2.1764 0.0902 33 1 3.3239 0.3026 -1.9192 34 1 7.7047 -0.2239 -2.3037 35 1 5.5929 -1.4112 -5.2163 36 1 6.8270 -3.6717 -7.3640 37 1 6.0991 -2.1062 -7.7971 38 1 7.7847 -2.4588 -8.2472 39 1 10.7183 -1.8004 -3.9391 40 1 9.6955 -1.1089 -2.6569 41 1 12.8180 2.3531 -3.2475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340828126.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:07 Heat of formation + Delta-G solvation = -28.678896 kcal Electronic energy + Delta-G solvation = -25241.710633 eV Core-core repulsion = 21352.351137 eV Total energy + Delta-G solvation = -3889.359496 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20009 -40.20040 -38.71299 -38.12735 -35.52537 -34.59839 -33.75516 -32.15703 -30.41313 -29.57571 -28.59506 -26.83086 -26.33536 -25.14088 -22.90680 -22.34584 -21.08480 -19.99976 -19.61957 -18.04893 -17.20677 -17.16635 -17.00912 -16.54396 -16.20799 -15.95934 -15.51722 -15.12383 -14.83125 -14.54297 -14.28855 -13.96551 -13.83579 -13.20471 -13.14306 -12.76898 -12.65449 -12.58988 -12.34461 -12.21068 -11.92394 -11.90566 -11.68014 -11.52634 -11.13688 -10.80097 -10.60082 -10.24745 -10.20581 -9.89961 -9.73377 -9.54912 -9.46607 -8.81880 -8.01017 -7.60620 -6.29834 -4.34489 1.23033 2.07720 2.57825 3.12002 3.15299 3.19989 3.20785 3.24498 3.29557 3.52343 3.74706 4.18723 4.35072 4.43939 4.66829 4.82857 4.93482 4.96120 4.96222 5.18797 5.24487 5.29669 5.43218 5.50616 5.96229 5.96991 6.00555 6.01149 6.11847 6.21667 6.34074 6.50398 6.63100 6.69073 6.94647 7.22137 7.33596 7.40993 7.50764 7.77142 7.99188 8.26311 8.49402 8.75144 9.24666 10.82403 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.003653 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.927154 B = 7663.718114 C = 9480.350420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.047 3.953 4 C 0.120 3.880 5 N -0.695 5.695 6 C 0.516 3.484 7 O -0.510 6.510 8 C 0.514 3.486 9 O -0.496 6.496 10 N -0.609 5.609 11 C 0.298 3.702 12 C -0.284 4.284 13 C 0.054 3.946 14 C -0.063 4.063 15 N -0.275 5.275 16 N -0.341 5.341 17 C 0.228 3.772 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.081 3.919 21 N -0.883 5.883 22 Si 0.874 3.126 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.264 1.264 26 H 0.043 0.957 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.417 0.583 34 H 0.427 0.573 35 H 0.165 0.835 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.721 -3.361 6.728 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.350 5.350 6 C 0.296 3.704 7 O -0.385 6.385 8 C 0.294 3.706 9 O -0.369 6.369 10 N -0.257 5.257 11 C 0.076 3.924 12 C -0.316 4.316 13 C -0.111 4.111 14 C -0.122 4.122 15 N -0.100 5.100 16 N -0.126 5.126 17 C 0.109 3.891 18 C -0.585 4.585 19 H 0.100 0.900 20 C -0.124 4.124 21 N -0.519 5.519 22 Si 0.699 3.301 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.189 1.189 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.253 0.747 34 H 0.266 0.734 35 H 0.182 0.818 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.136 -3.549 6.645 21.499 hybrid contribution -0.258 0.236 1.071 1.127 sum -20.394 -3.314 7.716 22.055 Atomic orbital electron populations 1.22775 0.80558 1.03113 1.00095 1.87950 1.20105 1.27255 1.95464 1.22832 0.92697 0.85673 1.01803 1.21540 0.92293 0.99687 0.86781 1.45579 1.06903 1.61463 1.21072 1.19756 0.83522 0.80134 0.87001 1.90830 1.52615 1.49374 1.45689 1.19889 0.82352 0.80515 0.87802 1.90700 1.52420 1.48607 1.45160 1.42291 1.08271 1.57289 1.17800 1.17952 0.86748 0.99609 0.88086 1.21299 1.00957 1.15159 0.94193 1.22042 0.90871 1.00610 0.97586 1.20045 1.00958 0.99942 0.91232 1.77370 1.19547 1.19093 0.94040 1.49116 1.04053 1.45708 1.13720 1.20010 0.81201 0.99024 0.88875 1.21165 1.13235 0.98141 1.25948 0.90014 1.24814 0.96237 0.94945 0.96386 1.69867 1.23849 1.16260 1.41925 0.86895 0.80828 0.80674 0.81668 1.19501 1.20411 1.18889 0.93801 0.89394 0.93964 0.91127 0.92081 0.89816 0.89035 0.74670 0.73416 0.81799 0.91234 0.90951 0.91308 0.92969 0.94077 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.18 10.65 -35.23 -0.38 -3.55 16 3 C 0.05 0.29 6.07 37.16 0.23 0.52 16 4 C 0.12 1.01 6.06 -4.04 -0.02 0.98 16 5 N -0.70 -7.51 5.50 -60.78 -0.33 -7.85 16 6 C 0.52 7.40 7.88 -11.66 -0.09 7.30 16 7 O -0.51 -8.49 16.48 5.48 0.09 -8.40 16 8 C 0.51 8.40 7.85 -11.65 -0.09 8.31 16 9 O -0.50 -8.34 13.60 5.46 0.07 -8.26 16 10 N -0.61 -11.28 5.40 -11.80 -0.06 -11.34 16 11 C 0.30 6.27 7.68 -152.85 -1.17 5.09 16 12 C -0.28 -5.63 9.58 -39.76 -0.38 -6.01 16 13 C 0.05 1.05 7.20 -82.47 -0.59 0.46 16 14 C -0.06 -0.89 10.44 36.01 0.38 -0.52 16 15 N -0.28 -6.27 12.56 33.64 0.42 -5.85 16 16 N -0.34 -7.91 3.62 -61.47 -0.22 -8.13 16 17 C 0.23 5.49 5.09 -5.20 -0.03 5.46 16 18 C -0.55 -15.31 9.94 -34.44 -0.34 -15.65 16 19 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 20 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 21 N -0.88 -26.24 13.96 55.43 0.77 -25.47 16 22 Si 0.87 20.26 27.47 -169.99 -4.67 15.59 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.17 8.14 -51.92 -0.42 -0.25 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.42 4.09 7.94 -40.82 -0.32 3.77 16 34 H 0.43 7.85 7.45 -40.82 -0.30 7.54 16 35 H 0.16 3.04 5.83 -52.49 -0.31 2.74 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 1.24 7.58 -51.93 -0.39 0.85 16 40 H 0.04 0.92 6.56 -51.93 -0.34 0.58 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -34.10 357.40 -5.51 -39.61 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.49 Total: 8.89 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: -1.11 Total: 9.39 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.58 Total: -58.64 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.21 Total: -20.22 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.67 Total: 15.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.10 -5.51 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340828126.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.930 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds