Wall clock time and date at job start Tue Mar 31 2020 04:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48503 * 109.47138 * 239.99688 * 3 2 1 5 5 H 1.48496 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46974 * 120.00236 * 3 2 1 7 7 C 1.38814 * 119.99442 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99295 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00364 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00093 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47423 * 34.99681 * 10 9 7 12 12 C 1.53003 * 109.46839 * 274.99804 * 10 9 7 13 13 O 1.42898 * 109.47247 * 295.00018 * 12 10 9 14 14 C 1.53000 * 109.47250 * 155.00221 * 10 9 7 15 15 N 1.46497 * 109.46695 * 304.99568 * 14 10 9 16 16 C 1.34784 * 119.99911 * 180.02562 * 15 14 10 17 17 O 1.21281 * 119.99677 * 359.97438 * 16 15 14 18 18 C 1.50694 * 120.00040 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.47008 * 180.02562 * 18 16 15 20 20 N 1.46500 * 109.47266 * 180.02562 * 19 18 16 21 21 C 1.34743 * 120.04634 * 89.99227 * 20 19 18 22 22 N 1.30645 * 121.49165 * 179.74620 * 21 20 19 23 23 C 1.33516 * 121.50417 * 0.26069 * 22 21 20 24 24 C 1.36191 * 119.91272 * 359.97438 * 23 22 21 25 25 C 1.35028 * 120.03780 * 270.25672 * 20 19 18 26 26 O 1.21977 * 120.70946 * 359.97438 * 25 20 19 27 27 H 0.97006 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99795 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47116 * 55.00062 * 12 10 9 30 30 H 1.09004 * 109.46871 * 174.99859 * 12 10 9 31 31 H 0.96701 * 113.99877 * 179.97438 * 13 12 10 32 32 H 1.09003 * 109.46768 * 185.00306 * 14 10 9 33 33 H 1.08999 * 109.47272 * 65.00010 * 14 10 9 34 34 H 0.96998 * 120.00546 * 359.97438 * 15 14 10 35 35 H 1.08997 * 109.47303 * 60.00271 * 18 16 15 36 36 H 1.08999 * 109.47487 * 299.99989 * 18 16 15 37 37 H 1.08995 * 109.47679 * 60.00034 * 19 18 16 38 38 H 1.09009 * 109.46773 * 299.99708 * 19 18 16 39 39 H 1.08002 * 119.25583 * 0.03270 * 21 20 19 40 40 H 1.08007 * 120.04439 * 179.97438 * 23 22 21 41 41 H 1.08009 * 120.70566 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9687 -3.5507 0.5889 12 6 2.4217 -4.0356 -1.4376 13 8 1.2274 -4.2885 -2.1804 14 6 1.1806 -4.7522 0.6090 15 7 0.7342 -4.3355 1.9406 16 6 -0.0549 -5.1477 2.6716 17 8 -0.3956 -6.2233 2.2267 18 6 -0.5147 -4.7189 4.0411 19 6 -1.3908 -5.8148 4.6513 20 7 -1.8383 -5.3977 5.9825 21 6 -2.9900 -4.7125 6.1231 22 7 -3.4181 -4.3310 7.2970 23 6 -2.7317 -4.5980 8.4106 24 6 -1.5570 -5.2833 8.3366 25 6 -1.0944 -5.6948 7.0695 26 8 -0.0474 -6.3106 6.9585 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 0.0002 29 1 2.9713 -3.2165 -1.9012 30 1 3.0422 -4.9318 -1.4311 31 1 1.3826 -4.5345 -3.1027 32 1 1.7556 -5.6746 0.6908 33 1 0.3131 -4.9201 -0.0291 34 1 1.0069 -3.4754 2.2966 35 1 -1.0901 -3.7969 3.9590 36 1 0.3527 -4.5502 4.6794 37 1 -0.8151 -6.7367 4.7335 38 1 -2.2583 -5.9838 4.0132 39 1 -3.5747 -4.4773 5.2461 40 1 -3.1074 -4.2709 9.3689 41 1 -0.9916 -5.5065 9.2293 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676592995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:07 Heat of formation + Delta-G solvation = -64.929202 kcal Electronic energy + Delta-G solvation = -25169.636424 eV Core-core repulsion = 21278.704997 eV Total energy + Delta-G solvation = -3890.931427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03215 -39.51311 -37.81005 -37.22264 -35.91942 -34.93412 -33.54548 -31.81735 -31.24663 -31.08171 -28.40700 -26.34142 -25.03067 -24.41557 -23.67558 -22.78229 -20.23814 -19.90702 -18.60834 -17.93363 -17.66217 -17.27352 -16.65821 -16.45004 -16.10222 -15.71317 -15.55744 -14.81532 -14.67825 -14.61996 -14.08534 -13.91581 -13.47663 -13.40763 -13.22494 -13.19144 -12.92191 -12.84443 -12.69955 -12.02457 -11.52774 -11.40759 -10.92892 -10.88198 -10.80308 -10.62856 -10.40035 -10.28467 -10.18084 -9.85328 -9.70170 -9.40445 -9.03224 -8.77013 -8.67430 -7.10029 -5.87394 -3.17817 0.34810 1.61004 2.14240 2.81919 3.32282 3.35624 3.40959 3.41999 3.53761 3.81131 4.25199 4.36960 4.47897 4.56285 4.65488 4.88127 4.94792 5.01959 5.25031 5.26202 5.36279 5.46183 5.47727 5.50611 5.53152 5.66433 5.84888 5.97561 5.99961 6.06825 6.30892 6.33516 6.46050 6.68530 6.81889 7.48043 7.56837 7.59913 7.82801 8.16023 8.29758 8.45385 9.42181 9.96629 10.33375 11.34063 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.003180 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.273686 B = 8803.884200 C =10204.518516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.059 3.941 13 O -0.560 6.560 14 C 0.118 3.882 15 N -0.709 5.709 16 C 0.518 3.482 17 O -0.555 6.555 18 C -0.158 4.158 19 C 0.105 3.895 20 N -0.519 5.519 21 C 0.379 3.621 22 N -0.547 5.547 23 C 0.151 3.849 24 C -0.292 4.292 25 C 0.514 3.486 26 O -0.534 6.534 27 H 0.257 0.743 28 H 0.389 0.611 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.364 0.636 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.411 0.589 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.206 0.794 40 H 0.166 0.834 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 -9.886 10.553 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.006 4.006 15 N -0.360 5.360 16 C 0.303 3.697 17 O -0.434 6.434 18 C -0.199 4.199 19 C -0.017 4.017 20 N -0.236 5.236 21 C 0.095 3.905 22 N -0.269 5.269 23 C 0.012 3.988 24 C -0.317 4.317 25 C 0.313 3.687 26 O -0.412 6.412 27 H 0.066 0.934 28 H 0.223 0.777 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.209 0.791 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.247 0.753 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.223 0.777 40 H 0.183 0.817 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.497 -10.333 10.981 15.735 hybrid contribution 1.414 1.029 -0.530 1.827 sum -3.083 -9.304 10.451 14.328 Atomic orbital electron populations 1.69664 1.05089 1.25891 1.56703 1.24736 0.95463 0.97644 1.02490 0.86298 0.78562 0.83582 0.77842 1.21306 1.21664 1.21227 1.19175 0.90911 0.84064 1.43946 0.91252 1.42357 1.06019 0.99035 1.88066 1.20599 0.95060 0.87007 0.91950 0.91664 1.23030 0.86519 0.97305 0.95365 1.86560 1.32165 1.91919 1.25730 1.21568 0.99586 0.96918 0.82515 1.45977 1.50256 1.21737 1.18006 1.20078 0.78724 0.84580 0.86284 1.90691 1.57386 1.22666 1.72675 1.21937 1.02214 1.00214 0.95511 1.21824 1.01086 0.99290 0.79527 1.46963 1.20426 1.45009 1.11198 1.25184 0.83497 0.83813 0.98007 1.68440 1.34134 1.26859 0.97456 1.22682 0.89732 0.89334 0.97049 1.22959 1.01395 1.09293 0.98012 1.17384 0.84984 0.81558 0.84743 1.90977 1.22640 1.41593 1.86009 0.93357 0.77696 0.93297 0.95499 0.79111 0.92054 0.90460 0.75303 0.87916 0.88143 0.87032 0.87402 0.77733 0.81714 0.82842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.40 9.93 -15.06 -0.15 -6.55 16 8 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.71 -16.39 4.51 -53.42 -0.24 -16.63 16 10 C 0.17 3.03 2.84 -67.93 -0.19 2.83 16 11 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 12 C 0.06 1.00 6.86 37.16 0.25 1.25 16 13 O -0.56 -9.70 12.64 -35.23 -0.45 -10.14 16 14 C 0.12 2.02 5.12 -4.04 -0.02 1.99 16 15 N -0.71 -11.29 5.39 -60.30 -0.32 -11.61 16 16 C 0.52 7.82 7.83 -10.99 -0.09 7.73 16 17 O -0.55 -9.86 15.98 5.56 0.09 -9.77 16 18 C -0.16 -1.80 6.02 -27.89 -0.17 -1.97 16 19 C 0.10 1.09 4.66 -4.04 -0.02 1.07 16 20 N -0.52 -5.18 2.57 -121.10 -0.31 -5.49 16 21 C 0.38 2.99 11.48 -90.53 -1.04 1.95 16 22 N -0.55 -4.92 10.39 -14.48 -0.15 -5.07 16 23 C 0.15 1.24 11.20 -17.56 -0.20 1.04 16 24 C -0.29 -2.88 10.07 -39.26 -0.40 -3.27 16 25 C 0.51 6.45 7.45 -15.09 -0.11 6.34 16 26 O -0.53 -8.72 16.79 4.94 0.08 -8.63 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.39 9.88 7.80 -40.82 -0.32 9.56 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.36 4.51 9.12 45.56 0.42 4.93 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.48 7.39 -51.93 -0.38 1.09 16 34 H 0.41 6.60 8.14 -40.82 -0.33 6.27 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.11 1.40 7.42 -51.93 -0.39 1.01 16 38 H 0.11 0.91 7.97 -51.92 -0.41 0.50 16 39 H 0.21 0.85 8.03 -52.49 -0.42 0.43 16 40 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -34.86 358.06 -7.19 -42.05 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -4.76 Total: 17.28 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: -2.22 Total: 12.14 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.30 Total: -64.56 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.27 Total: -28.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.86 -7.19 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676592995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.877 kcal (2) G-P(sol) polarization free energy of solvation -34.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds