Wall clock time and date at job start Tue Mar 31 2020 04:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00102 * 2 1 4 4 H 1.48503 * 109.47138 * 239.99688 * 3 2 1 5 5 H 1.48496 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.46974 * 120.00236 * 3 2 1 7 7 C 1.38814 * 119.99442 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99295 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00364 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00093 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47423 * 34.99681 * 10 9 7 12 12 C 1.53003 * 109.46839 * 274.99804 * 10 9 7 13 13 O 1.42898 * 109.47247 * 295.00018 * 12 10 9 14 14 C 1.53000 * 109.47250 * 155.00221 * 10 9 7 15 15 N 1.46497 * 109.46695 * 304.99568 * 14 10 9 16 16 C 1.34784 * 119.99911 * 180.02562 * 15 14 10 17 17 O 1.21281 * 119.99677 * 359.97438 * 16 15 14 18 18 C 1.50694 * 120.00040 * 180.02562 * 16 15 14 19 19 C 1.53002 * 109.47008 * 180.02562 * 18 16 15 20 20 N 1.46500 * 109.47266 * 180.02562 * 19 18 16 21 21 C 1.34743 * 120.04634 * 89.99227 * 20 19 18 22 22 N 1.30645 * 121.49165 * 179.74620 * 21 20 19 23 23 C 1.33516 * 121.50417 * 0.26069 * 22 21 20 24 24 C 1.36191 * 119.91272 * 359.97438 * 23 22 21 25 25 C 1.35028 * 120.03780 * 270.25672 * 20 19 18 26 26 O 1.21977 * 120.70946 * 359.97438 * 25 20 19 27 27 H 0.97006 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99795 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47116 * 55.00062 * 12 10 9 30 30 H 1.09004 * 109.46871 * 174.99859 * 12 10 9 31 31 H 0.96701 * 113.99877 * 179.97438 * 13 12 10 32 32 H 1.09003 * 109.46768 * 185.00306 * 14 10 9 33 33 H 1.08999 * 109.47272 * 65.00010 * 14 10 9 34 34 H 0.96998 * 120.00546 * 359.97438 * 15 14 10 35 35 H 1.08997 * 109.47303 * 60.00271 * 18 16 15 36 36 H 1.08999 * 109.47487 * 299.99989 * 18 16 15 37 37 H 1.08995 * 109.47679 * 60.00034 * 19 18 16 38 38 H 1.09009 * 109.46773 * 299.99708 * 19 18 16 39 39 H 1.08002 * 119.25583 * 0.03270 * 21 20 19 40 40 H 1.08007 * 120.04439 * 179.97438 * 23 22 21 41 41 H 1.08009 * 120.70566 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9687 -3.5507 0.5889 12 6 2.4217 -4.0356 -1.4376 13 8 1.2274 -4.2885 -2.1804 14 6 1.1806 -4.7522 0.6090 15 7 0.7342 -4.3355 1.9406 16 6 -0.0549 -5.1477 2.6716 17 8 -0.3956 -6.2233 2.2267 18 6 -0.5147 -4.7189 4.0411 19 6 -1.3908 -5.8148 4.6513 20 7 -1.8383 -5.3977 5.9825 21 6 -2.9900 -4.7125 6.1231 22 7 -3.4181 -4.3310 7.2970 23 6 -2.7317 -4.5980 8.4106 24 6 -1.5570 -5.2833 8.3366 25 6 -1.0944 -5.6948 7.0695 26 8 -0.0474 -6.3106 6.9585 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 0.0002 29 1 2.9713 -3.2165 -1.9012 30 1 3.0422 -4.9318 -1.4311 31 1 1.3826 -4.5345 -3.1027 32 1 1.7556 -5.6746 0.6908 33 1 0.3131 -4.9201 -0.0291 34 1 1.0069 -3.4754 2.2966 35 1 -1.0901 -3.7969 3.9590 36 1 0.3527 -4.5502 4.6794 37 1 -0.8151 -6.7367 4.7335 38 1 -2.2583 -5.9838 4.0132 39 1 -3.5747 -4.4773 5.2461 40 1 -3.1074 -4.2709 9.3689 41 1 -0.9916 -5.5065 9.2293 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676592995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:06 Heat of formation + Delta-G solvation = -92.801577 kcal Electronic energy + Delta-G solvation = -25170.845061 eV Core-core repulsion = 21278.704997 eV Total energy + Delta-G solvation = -3892.140064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.83888 -40.77108 -38.71813 -38.64065 -36.79281 -36.35082 -35.18411 -33.27220 -32.33415 -31.99397 -30.05583 -27.40714 -26.05186 -25.59668 -25.23063 -23.69210 -21.64796 -21.20258 -19.43746 -19.36704 -18.80886 -18.16190 -18.15383 -17.52878 -17.16046 -16.94881 -16.71510 -16.32095 -15.66390 -15.48457 -15.44316 -15.27222 -14.89230 -14.77463 -14.37381 -14.17099 -14.10396 -13.99495 -13.64772 -13.57680 -13.01884 -12.73987 -12.63216 -12.39018 -12.27975 -11.90332 -11.73030 -11.60716 -11.29825 -11.09929 -11.02823 -10.85884 -10.71634 -10.01275 -9.59817 -8.99708 -7.89778 -5.18427 -0.33572 0.79214 1.32231 1.51279 1.52088 1.58051 1.60141 2.29107 2.58169 2.62272 3.22034 3.42351 3.51988 3.58452 3.61593 3.68492 3.85675 3.91232 3.95757 4.05883 4.26328 4.35865 4.44619 4.51799 4.56980 4.61500 4.65776 4.73769 4.86657 4.89009 5.00556 5.23506 5.38064 5.48895 5.54963 5.55867 6.29470 6.55423 6.70236 6.79908 7.06431 7.20301 7.38273 8.10009 8.35887 9.32512 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.003180 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.273686 B = 8803.884200 C =10204.518516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.160 3.840 11 H 0.076 0.924 12 C 0.064 3.936 13 O -0.583 6.583 14 C 0.130 3.870 15 N -0.711 5.711 16 C 0.518 3.482 17 O -0.582 6.582 18 C -0.146 4.146 19 C 0.111 3.889 20 N -0.515 5.515 21 C 0.383 3.617 22 N -0.558 5.558 23 C 0.169 3.831 24 C -0.313 4.313 25 C 0.499 3.501 26 O -0.588 6.588 27 H 0.249 0.751 28 H 0.374 0.626 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.385 0.615 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.411 0.589 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.132 0.868 39 H 0.245 0.755 40 H 0.199 0.801 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 -9.625 10.986 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.361 5.361 10 C 0.051 3.949 11 H 0.094 0.906 12 C -0.017 4.017 13 O -0.389 6.389 14 C 0.005 3.995 15 N -0.362 5.362 16 C 0.305 3.695 17 O -0.463 6.463 18 C -0.187 4.187 19 C -0.011 4.011 20 N -0.230 5.230 21 C 0.101 3.899 22 N -0.279 5.279 23 C 0.029 3.971 24 C -0.337 4.337 25 C 0.301 3.699 26 O -0.470 6.470 27 H 0.058 0.942 28 H 0.206 0.794 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.233 0.767 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.247 0.753 35 H 0.142 0.858 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.150 0.850 39 H 0.261 0.739 40 H 0.216 0.784 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.719 -10.092 11.396 15.937 hybrid contribution 1.453 0.872 -0.692 1.830 sum -3.266 -9.221 10.704 14.501 Atomic orbital electron populations 1.69813 1.06444 1.25857 1.59183 1.25414 0.96139 1.00559 1.03788 0.85340 0.77194 0.79914 0.77985 1.21036 1.22724 1.20343 1.19548 0.91407 0.84955 1.41267 0.90411 1.42430 1.05405 1.00040 1.88217 1.20834 0.95115 0.85490 0.93449 0.90637 1.22871 0.86586 0.98486 0.93748 1.86510 1.32754 1.92070 1.27582 1.21367 0.98558 0.96899 0.82654 1.46000 1.50567 1.21856 1.17741 1.20610 0.77853 0.83892 0.87180 1.90677 1.58271 1.23783 1.73579 1.21863 1.02495 1.01301 0.92997 1.21729 1.01588 0.97783 0.80017 1.46917 1.20788 1.44907 1.10413 1.26022 0.82530 0.82186 0.99137 1.68545 1.34302 1.27107 0.97986 1.23165 0.88465 0.87243 0.98210 1.23000 1.02642 1.10871 0.97182 1.17865 0.84661 0.81274 0.86108 1.90939 1.24962 1.44313 1.86806 0.94205 0.79358 0.94649 0.91806 0.76663 0.90719 0.92629 0.75324 0.85793 0.88571 0.89526 0.84977 0.73883 0.78406 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.52 13.06 21.65 0.28 -55.24 16 2 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 3 Si 0.97 43.58 29.55 68.60 2.03 45.61 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.24 -12.12 9.93 84.03 0.83 -11.28 16 8 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.72 -32.81 4.51 -322.93 -1.46 -34.26 16 10 C 0.16 5.69 2.84 44.99 0.13 5.81 16 11 H 0.08 2.53 8.08 -2.39 -0.02 2.52 16 12 C 0.06 2.03 6.86 71.98 0.49 2.53 16 13 O -0.58 -19.40 12.64 -148.98 -1.88 -21.28 16 14 C 0.13 4.31 5.12 86.38 0.44 4.75 16 15 N -0.71 -22.26 5.39 -463.06 -2.49 -24.75 16 16 C 0.52 15.34 7.83 87.65 0.69 16.02 16 17 O -0.58 -20.48 15.98 -3.03 -0.05 -20.53 16 18 C -0.15 -3.20 6.02 29.85 0.18 -3.02 16 19 C 0.11 2.22 4.66 86.38 0.40 2.62 16 20 N -0.52 -9.70 2.57 -655.02 -1.68 -11.38 16 21 C 0.38 5.06 11.48 180.32 2.07 7.12 16 22 N -0.56 -8.53 10.39 -199.73 -2.08 -10.60 16 23 C 0.17 2.37 11.20 83.96 0.94 3.31 16 24 C -0.31 -5.92 10.07 22.48 0.23 -5.70 16 25 C 0.50 12.56 7.45 84.88 0.63 13.19 16 26 O -0.59 -20.00 16.79 -5.24 -0.09 -20.09 16 27 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 28 H 0.37 19.14 7.80 -92.71 -0.72 18.41 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.39 8.90 9.12 -74.06 -0.68 8.23 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 2.11 7.39 -2.39 -0.02 2.09 16 34 H 0.41 12.99 8.14 -92.71 -0.75 12.23 16 35 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.09 2.23 7.42 -2.39 -0.02 2.21 16 38 H 0.13 1.97 7.97 -2.38 -0.02 1.96 16 39 H 0.25 1.09 8.03 -2.91 -0.02 1.07 16 40 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -76.38 358.06 -0.98 -77.36 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: -1.07 Total: 42.86 kcal Atomic # 6 Polarization: 24.81 SS G_CDS: 7.50 Total: 32.31 kcal Atomic # 7 Polarization: -128.81 SS G_CDS: -7.43 Total: -136.24 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -2.02 Total: -61.90 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -76.38 -0.98 -77.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676592995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.442 kcal (2) G-P(sol) polarization free energy of solvation -76.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds