Wall clock time and date at job start Tue Mar 31 2020 04:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00245 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00055 * 3 2 1 7 7 C 1.38811 * 119.99540 * 180.27867 * 2 1 3 8 8 H 1.08004 * 119.99562 * 179.72386 * 7 2 1 9 9 N 1.36935 * 120.00368 * 359.72375 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47055 * 324.99804 * 10 9 7 12 12 C 1.52995 * 109.47120 * 84.99640 * 10 9 7 13 13 O 1.42899 * 109.47156 * 65.00268 * 12 10 9 14 14 C 1.52998 * 109.47009 * 204.99963 * 10 9 7 15 15 N 1.46500 * 109.47304 * 54.99714 * 14 10 9 16 16 C 1.34776 * 119.99630 * 179.97438 * 15 14 10 17 17 O 1.21279 * 120.00423 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.99649 * 179.97438 * 16 15 14 19 19 C 1.52996 * 109.47179 * 179.97438 * 18 16 15 20 20 N 1.46500 * 109.47161 * 180.02562 * 19 18 16 21 21 C 1.34749 * 120.03796 * 269.73101 * 20 19 18 22 22 N 1.30640 * 121.48651 * 179.70453 * 21 20 19 23 23 C 1.33521 * 121.50531 * 0.57689 * 22 21 20 24 24 C 1.36201 * 119.91001 * 359.71406 * 23 22 21 25 25 C 1.35018 * 120.04399 * 90.00534 * 20 19 18 26 26 O 1.21984 * 120.70625 * 359.97438 * 25 20 19 27 27 H 0.97000 * 120.00481 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47180 * 185.00052 * 12 10 9 30 30 H 1.09003 * 109.47292 * 304.99824 * 12 10 9 31 31 H 0.96704 * 113.99871 * 179.97438 * 13 12 10 32 32 H 1.09008 * 109.46958 * 174.99988 * 14 10 9 33 33 H 1.08993 * 109.47007 * 294.99451 * 14 10 9 34 34 H 0.96999 * 119.99793 * 0.02562 * 15 14 10 35 35 H 1.08999 * 109.47441 * 300.00684 * 18 16 15 36 36 H 1.09004 * 109.46729 * 60.00092 * 18 16 15 37 37 H 1.08999 * 109.47561 * 300.00694 * 19 18 16 38 38 H 1.09005 * 109.46410 * 60.00328 * 19 18 16 39 39 H 1.07990 * 119.25733 * 359.97167 * 21 20 19 40 40 H 1.08006 * 120.04173 * 179.73579 * 23 22 21 41 41 H 1.08002 * 120.69930 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2022 -0.0104 9 7 1.3255 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 1 2.9664 -3.5493 -0.6042 12 6 2.4273 -4.0388 1.4232 13 8 1.2359 -4.2934 2.1701 14 6 1.1784 -4.7507 -0.6202 15 7 0.7267 -4.3311 -1.9492 16 6 -0.0652 -5.1417 -2.6788 17 8 -0.4041 -6.2183 -2.2351 18 6 -0.5303 -4.7098 -4.0456 19 6 -1.4087 -5.8043 -4.6549 20 7 -1.8604 -5.3846 -5.9839 21 6 -3.0152 -4.7037 -6.1199 22 7 -3.4418 -4.3108 -7.2906 23 6 -2.7590 -4.5758 -8.4070 24 6 -1.5866 -5.2656 -8.3385 25 6 -1.1230 -5.6846 -7.0744 26 8 -0.0777 -6.3043 -6.9683 27 1 -0.4851 -0.8400 -0.0004 28 1 0.3555 -2.3881 -0.0015 29 1 3.0478 -4.9349 1.4124 30 1 2.9788 -3.2206 1.8865 31 1 1.3947 -4.5421 3.0910 32 1 1.7530 -5.6731 -0.7062 33 1 0.3134 -4.9200 0.0209 34 1 0.9981 -3.4701 -2.3042 35 1 -1.1054 -3.7878 -3.9593 36 1 0.3347 -4.5396 -4.6868 37 1 -0.8333 -6.7260 -4.7413 38 1 -2.2737 -5.9747 -4.0138 39 1 -3.5990 -4.4737 -5.2410 40 1 -3.1358 -4.2433 -9.3630 41 1 -1.0238 -5.4866 -9.2334 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676592996.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:11 Heat of formation + Delta-G solvation = -64.662906 kcal Electronic energy + Delta-G solvation = -25217.539147 eV Core-core repulsion = 21326.619268 eV Total energy + Delta-G solvation = -3890.919880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 310.147 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.06317 -39.59976 -37.83798 -37.34059 -35.95941 -35.07090 -33.79406 -31.89869 -31.27325 -31.09893 -28.17433 -26.38510 -25.08578 -24.45594 -23.52767 -22.82228 -20.39352 -20.04300 -18.63728 -17.97123 -17.76462 -17.35379 -16.78713 -16.53033 -16.18889 -15.78382 -15.67175 -14.84981 -14.68012 -14.53310 -14.30808 -13.76282 -13.73539 -13.52145 -13.41349 -13.24997 -13.09949 -12.94761 -12.78867 -11.93494 -11.57885 -11.47935 -10.93889 -10.83203 -10.80993 -10.51441 -10.42775 -10.31300 -10.07445 -9.79496 -9.55519 -9.25174 -9.04881 -8.79788 -8.77299 -7.17535 -6.20458 -3.22278 0.32047 1.58327 2.10521 2.73576 3.28278 3.44599 3.45630 3.47990 3.65087 3.78317 4.22186 4.33285 4.50544 4.55903 4.61351 4.80106 4.89304 4.97016 5.18665 5.23255 5.27034 5.38035 5.43258 5.47835 5.48375 5.61519 5.76956 5.89024 5.90116 6.03785 6.20410 6.30513 6.34473 6.58601 6.72238 7.45345 7.57008 7.67297 7.73191 8.07618 8.36247 8.65365 9.09333 9.96169 10.11419 11.27064 Molecular weight = 310.15amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.003183 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.136933 B = 8795.138756 C =10186.752757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.039 4.039 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.340 4.340 8 H 0.064 0.936 9 N -0.724 5.724 10 C 0.171 3.829 11 H 0.067 0.933 12 C 0.059 3.941 13 O -0.563 6.563 14 C 0.117 3.883 15 N -0.711 5.711 16 C 0.518 3.482 17 O -0.553 6.553 18 C -0.158 4.158 19 C 0.105 3.895 20 N -0.520 5.520 21 C 0.378 3.622 22 N -0.546 5.546 23 C 0.151 3.849 24 C -0.291 4.291 25 C 0.514 3.486 26 O -0.535 6.535 27 H 0.256 0.744 28 H 0.371 0.629 29 H 0.028 0.972 30 H 0.050 0.950 31 H 0.365 0.635 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.410 0.590 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.206 0.794 40 H 0.166 0.834 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 -10.007 -10.602 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.237 4.237 3 Si 0.909 3.091 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.471 4.471 8 H 0.082 0.918 9 N -0.367 5.367 10 C 0.060 3.940 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.366 6.366 14 C -0.007 4.007 15 N -0.362 5.362 16 C 0.303 3.697 17 O -0.432 6.432 18 C -0.199 4.199 19 C -0.017 4.017 20 N -0.236 5.236 21 C 0.095 3.905 22 N -0.268 5.268 23 C 0.012 3.988 24 C -0.316 4.316 25 C 0.313 3.687 26 O -0.412 6.412 27 H 0.068 0.932 28 H 0.205 0.795 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.210 0.790 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.246 0.754 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.222 0.778 40 H 0.183 0.817 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.130 -8.907 -11.033 14.769 hybrid contribution 1.216 -1.663 0.537 2.129 sum -2.914 -10.570 -10.496 15.178 Atomic orbital electron populations 1.70880 1.06047 1.28603 1.52695 1.25745 0.96997 1.00919 1.00057 0.83263 0.74258 0.75707 0.75848 1.21013 1.22323 1.22229 1.20019 0.91933 0.85710 1.49430 0.91785 1.42363 1.05029 1.00044 1.89290 1.20531 0.94981 0.86480 0.92033 0.91536 1.23015 0.86578 0.97396 0.95213 1.86538 1.32330 1.91828 1.25900 1.21587 0.99512 0.97041 0.82576 1.45994 1.50203 1.21732 1.18267 1.20108 0.78715 0.84594 0.86264 1.90695 1.57461 1.22508 1.72557 1.21938 1.02220 1.00233 0.95472 1.21811 1.00992 0.99233 0.79683 1.46954 1.20396 1.45163 1.11119 1.25180 0.83473 0.83818 0.98077 1.68440 1.34299 1.26569 0.97498 1.22693 0.89731 0.89366 0.96990 1.22961 1.01396 1.09178 0.98068 1.17385 0.85013 0.81577 0.84695 1.90979 1.22731 1.41486 1.86031 0.93231 0.79480 0.95353 0.93215 0.78979 0.91904 0.90544 0.75381 0.87961 0.88085 0.87017 0.87411 0.77761 0.81667 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.60 13.70 55.49 0.76 -26.84 16 2 C -0.04 -1.06 5.50 -17.43 -0.10 -1.15 16 3 Si 1.08 24.68 29.92 -169.99 -5.09 19.60 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.30 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.34 -8.85 9.93 -15.06 -0.15 -9.00 16 8 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 9 N -0.72 -16.66 4.51 -53.43 -0.24 -16.90 16 10 C 0.17 3.17 2.84 -67.93 -0.19 2.97 16 11 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 12 C 0.06 1.01 6.86 37.16 0.25 1.27 16 13 O -0.56 -9.73 12.64 -35.23 -0.45 -10.18 16 14 C 0.12 1.99 5.12 -4.04 -0.02 1.97 16 15 N -0.71 -11.27 5.39 -60.29 -0.32 -11.59 16 16 C 0.52 7.76 7.83 -10.98 -0.09 7.67 16 17 O -0.55 -9.76 15.98 5.56 0.09 -9.67 16 18 C -0.16 -1.79 6.02 -27.88 -0.17 -1.96 16 19 C 0.11 1.08 4.67 -4.04 -0.02 1.06 16 20 N -0.52 -5.15 2.57 -121.12 -0.31 -5.46 16 21 C 0.38 2.96 11.48 -90.53 -1.04 1.92 16 22 N -0.55 -4.89 10.39 -14.48 -0.15 -5.04 16 23 C 0.15 1.23 11.20 -17.55 -0.20 1.03 16 24 C -0.29 -2.86 10.07 -39.26 -0.40 -3.25 16 25 C 0.51 6.43 7.45 -15.10 -0.11 6.31 16 26 O -0.53 -8.70 16.78 4.93 0.08 -8.62 16 27 H 0.26 7.49 6.77 -40.82 -0.28 7.22 16 28 H 0.37 9.18 6.63 -40.82 -0.27 8.91 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.37 4.53 9.12 45.56 0.42 4.95 16 32 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 33 H 0.08 1.45 7.39 -51.93 -0.38 1.07 16 34 H 0.41 6.59 8.14 -40.82 -0.33 6.26 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.11 1.39 7.41 -51.93 -0.38 1.01 16 38 H 0.11 0.90 7.97 -51.93 -0.41 0.48 16 39 H 0.21 0.84 8.02 -52.49 -0.42 0.42 16 40 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -35.81 356.35 -7.13 -42.94 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -4.65 Total: 17.55 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -2.22 Total: 8.85 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -0.27 Total: -65.84 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.27 Total: -28.47 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.09 Total: 19.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.81 -7.13 -42.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676592996.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.725 kcal (2) G-P(sol) polarization free energy of solvation -35.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds