Wall clock time and date at job start Tue Mar 31 2020 04:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48504 * 109.46693 * 245.29484 * 3 2 1 5 5 H 1.48500 * 109.47356 * 125.29897 * 3 2 1 6 6 H 1.48494 * 109.47182 * 5.29313 * 3 2 1 7 7 C 1.38810 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00284 * 345.76623 * 7 2 1 9 9 N 1.36937 * 120.00032 * 165.77306 * 7 2 1 10 10 C 1.47422 * 125.65085 * 168.77465 * 9 7 2 11 11 C 1.55132 * 104.72390 * 155.81788 * 10 9 7 12 12 H 1.08997 * 110.91084 * 155.28302 * 11 10 9 13 13 N 1.46505 * 111.22234 * 279.18134 * 11 10 9 14 14 C 1.34779 * 119.99714 * 267.19982 * 13 11 10 15 15 O 1.21277 * 120.00137 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99426 * 180.02562 * 14 13 11 17 17 H 1.08995 * 115.55741 * 59.87738 * 16 14 13 18 18 C 1.53060 * 117.50412 * 205.63258 * 16 14 13 19 19 C 1.52696 * 59.93332 * 107.46831 * 18 16 14 20 20 C 1.53252 * 117.88351 * 107.77953 * 19 18 16 21 21 C 1.53330 * 108.48706 * 196.27110 * 20 19 18 22 22 O 1.42872 * 109.31661 * 306.01762 * 21 20 19 23 23 C 1.42873 * 114.51948 * 64.36575 * 22 21 20 24 24 C 1.53247 * 117.88794 * 252.22135 * 19 18 16 25 25 C 1.55151 * 101.48474 * 37.29539 * 11 10 9 26 26 H 1.08997 * 110.87306 * 82.76774 * 25 11 10 27 27 O 1.42898 * 110.72409 * 205.96881 * 25 11 10 28 28 C 1.47027 * 125.64547 * 349.08609 * 9 7 2 29 29 H 0.97002 * 120.00520 * 178.10175 * 1 2 3 30 30 H 1.08991 * 110.37274 * 274.74860 * 10 9 7 31 31 H 1.09009 * 110.36613 * 37.07371 * 10 9 7 32 32 H 0.97006 * 120.00090 * 87.20678 * 13 11 10 33 33 H 1.08998 * 117.50581 * 214.93431 * 18 16 14 34 34 H 1.09004 * 117.50536 * 0.02562 * 18 16 14 35 35 H 1.09009 * 109.63403 * 315.96625 * 20 19 18 36 36 H 1.08997 * 109.63427 * 76.56669 * 20 19 18 37 37 H 1.08999 * 109.49867 * 186.06569 * 21 20 19 38 38 H 1.08994 * 109.49738 * 65.96717 * 21 20 19 39 39 H 1.08998 * 109.49455 * 175.67845 * 23 22 21 40 40 H 1.09001 * 109.51847 * 55.60054 * 23 22 21 41 41 H 1.09006 * 109.62959 * 283.43062 * 24 19 18 42 42 H 1.09001 * 109.63464 * 43.82834 * 24 19 18 43 43 H 0.96701 * 114.00291 * 174.98015 * 27 25 11 44 44 H 1.09001 * 109.87951 * 300.43728 * 28 9 7 45 45 H 1.09001 * 109.88220 * 61.60780 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0044 1.7537 -1.2720 5 1 3.1983 1.6419 1.1427 6 1 1.2904 2.7434 0.1292 7 6 2.0102 -1.2022 0.0005 8 1 1.4950 -2.1230 0.2309 9 7 3.3480 -1.2206 -0.2909 10 6 4.2527 -2.3693 -0.1028 11 6 5.4111 -2.1272 -1.1058 12 1 6.3199 -2.6330 -0.7799 13 7 5.0371 -2.5458 -2.4591 14 6 5.3277 -3.7916 -2.8836 15 8 5.8984 -4.5661 -2.1452 16 6 4.9435 -4.2219 -4.2758 17 1 5.3783 -3.6364 -5.0858 18 6 4.7301 -5.7178 -4.5196 19 6 3.5330 -4.7707 -4.4804 20 6 2.8267 -4.4532 -5.8029 21 6 1.9541 -3.2086 -5.6015 22 8 1.0828 -3.4173 -4.4885 23 6 1.7492 -3.5654 -3.2335 24 6 2.6068 -4.8361 -3.2612 25 6 5.5726 -0.5862 -1.0252 26 1 6.1885 -0.3045 -0.1711 27 8 6.1271 -0.0718 -2.2375 28 6 4.1215 -0.0958 -0.8372 29 1 -0.4851 -0.8396 -0.0278 30 1 4.6310 -2.3910 0.9191 31 1 3.7370 -3.3006 -0.3372 32 1 4.5804 -1.9264 -3.0496 33 1 5.0248 -6.1167 -5.4902 34 1 4.8672 -6.3905 -3.6729 35 1 3.5690 -4.2587 -6.5771 36 1 2.2006 -5.2962 -6.0953 37 1 1.3616 -3.0306 -6.4989 38 1 2.5907 -2.3454 -5.4081 39 1 1.0101 -3.6427 -2.4361 40 1 2.3873 -2.6997 -3.0555 41 1 1.9620 -5.7116 -3.3378 42 1 3.2033 -4.8990 -2.3511 43 1 6.1773 0.8934 -2.2686 44 1 3.7056 0.2081 -1.7978 45 1 4.1006 0.7418 -0.1400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084128021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:54 Heat of formation + Delta-G solvation = -69.853563 kcal Electronic energy + Delta-G solvation = -28239.193598 eV Core-core repulsion = 24451.588978 eV Total energy + Delta-G solvation = -3787.604620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.57352 -39.14407 -38.05167 -36.20855 -35.41574 -33.82836 -31.97766 -31.16864 -30.13061 -28.95081 -27.95624 -24.82749 -23.68314 -23.58809 -22.66550 -21.08358 -20.63371 -19.87631 -18.90297 -17.64730 -17.20299 -16.99593 -16.23114 -15.96185 -15.83024 -15.46408 -14.97775 -14.78490 -14.40956 -13.92194 -13.79997 -13.63065 -13.31236 -13.05236 -12.91938 -12.86542 -12.43421 -12.35908 -12.04605 -11.97365 -11.38921 -11.34603 -11.26028 -11.10146 -10.79919 -10.67441 -10.46769 -10.31467 -10.08335 -9.98592 -9.60776 -9.35031 -9.15032 -9.07477 -8.92444 -8.62843 -7.13274 -6.36755 -3.29713 2.71579 3.25044 3.28257 3.39230 3.61684 3.66620 4.05466 4.18206 4.47773 4.53173 4.60733 4.72386 4.79449 4.81174 4.99422 5.05786 5.11325 5.17077 5.28701 5.36107 5.41151 5.42434 5.57942 5.61741 5.67676 5.70164 5.76011 5.84550 5.87772 5.90452 5.97906 6.04362 6.14548 6.20981 6.31446 6.36161 6.42485 6.46081 6.81194 7.42333 7.54379 7.68197 7.78953 8.26062 8.45295 8.96561 9.46861 10.12704 11.13774 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.013575 B = 0.006231 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.180407 B = 4492.826390 C = 5589.584281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.020 4.020 3 Si 1.074 2.926 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.301 1.301 7 C -0.321 4.321 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.125 3.875 11 C 0.141 3.859 12 H 0.099 0.901 13 N -0.689 5.689 14 C 0.547 3.453 15 O -0.550 6.550 16 C -0.181 4.181 17 H 0.125 0.875 18 C -0.137 4.137 19 C -0.102 4.102 20 C -0.116 4.116 21 C 0.062 3.938 22 O -0.381 6.381 23 C 0.069 3.931 24 C -0.120 4.120 25 C 0.082 3.918 26 H 0.077 0.923 27 O -0.558 6.558 28 C 0.079 3.921 29 H 0.263 0.737 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.405 0.595 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.379 0.621 44 H 0.055 0.945 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.239 -5.449 -10.978 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.220 4.220 3 Si 0.909 3.091 4 H -0.217 1.217 5 H -0.229 1.229 6 H -0.230 1.230 7 C -0.448 4.448 8 H 0.097 0.903 9 N -0.333 5.333 10 C -0.002 4.002 11 C 0.034 3.966 12 H 0.117 0.883 13 N -0.338 5.338 14 C 0.333 3.667 15 O -0.428 6.428 16 C -0.202 4.202 17 H 0.143 0.857 18 C -0.175 4.175 19 C -0.102 4.102 20 C -0.153 4.153 21 C -0.015 4.015 22 O -0.299 6.299 23 C -0.007 4.007 24 C -0.157 4.157 25 C 0.022 3.978 26 H 0.095 0.905 27 O -0.363 6.363 28 C -0.046 4.046 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.240 0.760 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.226 0.774 44 H 0.073 0.927 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.184 -4.992 -10.550 15.490 hybrid contribution 0.398 -0.646 0.050 0.761 sum 10.582 -5.638 -10.500 15.938 Atomic orbital electron populations 1.70891 1.05640 1.29254 1.50777 1.25802 0.96546 1.00782 0.98904 0.83773 0.73186 0.76372 0.75808 1.21725 1.22858 1.22964 1.20108 0.81257 0.95938 1.47489 0.90291 1.44673 1.05657 1.07946 1.75000 1.22069 0.90170 0.92719 0.95276 1.22241 0.98685 0.92230 0.83409 0.88285 1.45490 1.59360 1.13771 1.15222 1.19510 0.78109 0.81661 0.87434 1.90667 1.42676 1.52728 1.56762 1.22387 1.01704 0.99554 0.96563 0.85692 1.23002 0.99914 0.91012 1.03534 1.21519 0.88166 1.03181 0.97381 1.21859 0.99152 0.99847 0.94491 1.22550 0.93128 0.95710 0.90152 1.87890 1.33483 1.92890 1.15643 1.22592 0.96707 0.96020 0.85427 1.21869 0.97871 1.00085 0.95890 1.23200 0.93903 0.93567 0.87094 0.90509 1.86457 1.84921 1.26189 1.38733 1.22732 0.90984 0.92639 0.98252 0.92712 0.94598 0.92757 0.75987 0.88043 0.87678 0.90774 0.90290 0.89041 0.93192 0.88394 0.91968 0.90584 0.90621 0.77402 0.92722 0.95076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.14 13.71 55.49 0.76 -27.38 16 2 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 3 Si 1.07 25.63 24.53 -169.99 -4.17 21.46 16 4 H -0.29 -6.17 5.43 56.52 0.31 -5.87 16 5 H -0.30 -6.91 6.82 56.52 0.39 -6.52 16 6 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 7 C -0.32 -8.62 10.56 -15.06 -0.16 -8.78 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 N -0.60 -13.60 3.32 -169.93 -0.56 -14.16 16 10 C 0.12 2.42 6.95 -2.41 -0.02 2.40 16 11 C 0.14 2.34 3.31 -65.66 -0.22 2.13 16 12 H 0.10 1.63 7.54 -51.93 -0.39 1.24 16 13 N -0.69 -10.91 4.70 -51.61 -0.24 -11.16 16 14 C 0.55 8.69 5.85 -10.98 -0.06 8.62 16 15 O -0.55 -10.38 16.21 5.56 0.09 -10.29 16 16 C -0.18 -2.29 5.87 -91.88 -0.54 -2.83 16 17 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 18 C -0.14 -1.58 9.52 -26.86 -0.26 -1.83 16 19 C -0.10 -1.24 2.03 -154.55 -0.31 -1.56 16 20 C -0.12 -1.21 5.92 -26.43 -0.16 -1.37 16 21 C 0.06 0.76 6.85 37.33 0.26 1.02 16 22 O -0.38 -6.20 10.69 -35.23 -0.38 -6.58 16 23 C 0.07 1.15 6.84 37.33 0.26 1.41 16 24 C -0.12 -1.73 5.58 -26.43 -0.15 -1.88 16 25 C 0.08 1.29 4.12 -24.90 -0.10 1.19 16 26 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 27 O -0.56 -7.61 12.67 -35.23 -0.45 -8.06 16 28 C 0.08 1.56 4.37 -3.06 -0.01 1.55 16 29 H 0.26 7.95 8.73 -40.82 -0.36 7.60 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 32 H 0.41 6.35 8.11 -40.82 -0.33 6.02 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.35 7.90 -51.93 -0.41 0.94 16 35 H 0.07 0.62 8.08 -51.92 -0.42 0.20 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.06 1.14 7.75 -51.93 -0.40 0.73 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.23 6.84 -51.93 -0.36 0.87 16 43 H 0.38 3.67 9.11 45.56 0.42 4.09 16 44 H 0.06 1.13 6.67 -51.93 -0.35 0.79 16 45 H 0.03 0.66 3.83 -51.93 -0.20 0.46 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -32.48 352.47 -7.56 -40.04 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.35 Total: 11.42 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.57 Total: -0.60 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.05 Total: -52.70 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.73 Total: -24.93 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.17 Total: 21.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.48 -7.56 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084128021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.817 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds