Wall clock time and date at job start Tue Mar 31 2020 04:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99930 * 2 1 4 4 H 1.48509 * 109.46603 * 239.99850 * 3 2 1 5 5 H 1.48501 * 109.47025 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47165 * 120.00012 * 3 2 1 7 7 C 1.38815 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99586 * 162.95293 * 7 2 1 9 9 N 1.36934 * 120.00247 * 343.23400 * 7 2 1 10 10 C 1.46925 * 120.63232 * 151.36187 * 9 7 2 11 11 C 1.53622 * 108.54139 * 126.36511 * 10 9 7 12 12 C 1.53042 * 109.24089 * 54.86141 * 11 10 9 13 13 C 1.53047 * 109.53600 * 298.50424 * 12 11 10 14 14 H 1.09002 * 109.52171 * 301.40161 * 13 12 11 15 15 C 1.52998 * 109.50061 * 181.31953 * 13 12 11 16 16 N 1.46499 * 109.47299 * 175.16217 * 15 13 12 17 17 C 1.34773 * 120.00001 * 179.97438 * 16 15 13 18 18 O 1.21284 * 120.00128 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00027 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46977 * 180.02562 * 19 17 16 21 21 H 1.08997 * 110.61620 * 303.38462 * 20 19 17 22 22 C 1.54268 * 110.69170 * 66.45441 * 20 19 17 23 23 O 1.45595 * 106.36797 * 117.32591 * 22 20 19 24 24 C 1.34517 * 109.64007 * 21.26807 * 23 22 20 25 25 O 1.20825 * 126.43031 * 147.15141 * 24 23 22 26 26 C 1.51792 * 107.14185 * 327.17369 * 24 23 22 27 27 C 1.46931 * 120.62797 * 331.63817 * 9 7 2 28 28 H 0.97005 * 120.00397 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58192 * 246.19955 * 10 9 7 30 30 H 1.08996 * 109.58390 * 6.62190 * 10 9 7 31 31 H 1.08994 * 109.63694 * 294.86407 * 11 10 9 32 32 H 1.09000 * 109.45645 * 174.74052 * 11 10 9 33 33 H 1.09003 * 109.45839 * 178.48963 * 12 11 10 34 34 H 1.08991 * 109.45251 * 58.51792 * 12 11 10 35 35 H 1.09002 * 109.46953 * 295.16967 * 15 13 12 36 36 H 1.08999 * 109.47060 * 55.16196 * 15 13 12 37 37 H 0.97000 * 119.99717 * 0.02562 * 16 15 13 38 38 H 1.09000 * 109.46853 * 300.00288 * 19 17 16 39 39 H 1.08999 * 109.47199 * 60.00044 * 19 17 16 40 40 H 1.08996 * 110.07585 * 236.55423 * 22 20 19 41 41 H 1.09001 * 110.07040 * 358.10064 * 22 20 19 42 42 H 1.08999 * 110.60770 * 272.12129 * 26 24 23 43 43 H 1.08992 * 110.61287 * 149.13882 * 26 24 23 44 44 H 1.08998 * 109.58586 * 353.37676 * 27 9 7 45 45 H 1.09000 * 109.58744 * 113.80031 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0546 -1.2228 -0.2737 9 7 1.3692 -2.3627 0.3431 10 6 1.8079 -3.6515 -0.2095 11 6 2.0649 -4.6202 0.9548 12 6 0.8099 -4.7051 1.8266 13 6 0.4970 -3.3248 2.4091 14 1 1.3471 -2.9756 2.9951 15 6 -0.7385 -3.4174 3.3067 16 7 -0.9696 -2.1239 3.9545 17 6 -2.0108 -1.9681 4.7959 18 8 -2.7563 -2.8989 5.0171 19 6 -2.2489 -0.6374 5.4618 20 6 -3.4844 -0.7301 6.3595 21 1 -4.3528 -1.0525 5.7851 22 6 -3.2279 -1.6861 7.5427 23 8 -3.3328 -0.8807 8.7511 24 6 -4.0445 0.2312 8.4930 25 8 -4.7759 0.8095 9.2614 26 6 -3.7567 0.6228 7.0550 27 6 0.2258 -2.3421 1.2657 28 1 -0.4851 0.8401 -0.0004 29 1 1.0305 -4.0542 -0.8588 30 1 2.7264 -3.5110 -0.7793 31 1 2.9005 -4.2590 1.5542 32 1 2.3009 -5.6082 0.5597 33 1 0.9792 -5.4121 2.6388 34 1 -0.0308 -5.0426 1.2206 35 1 -1.6069 -3.6821 2.7033 36 1 -0.5784 -4.1814 4.0675 37 1 -0.3736 -1.3794 3.7772 38 1 -1.3807 -0.3727 6.0653 39 1 -2.4088 0.1263 4.7007 40 1 -3.9778 -2.4771 7.5540 41 1 -2.2297 -2.1171 7.4658 42 1 -2.8782 1.2657 7.0009 43 1 -4.6218 1.1152 6.6109 44 1 0.1001 -1.3375 1.6694 45 1 -0.6779 -2.6403 0.7342 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752780098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:49 Heat of formation + Delta-G solvation = -113.348627 kcal Electronic energy + Delta-G solvation = -26065.911208 eV Core-core repulsion = 22276.420501 eV Total energy + Delta-G solvation = -3789.490707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24935 -39.64175 -37.95152 -37.59683 -34.87431 -34.29707 -33.14655 -31.10671 -29.96282 -29.17122 -27.57375 -25.45099 -25.12696 -22.31543 -21.76388 -21.58727 -20.82986 -20.11231 -19.07654 -17.57507 -17.03461 -17.01103 -16.69254 -16.48247 -15.70358 -15.51862 -14.98412 -14.66346 -14.21287 -13.87083 -13.70248 -13.63315 -13.35409 -13.32584 -12.98505 -12.90136 -12.43455 -12.29928 -12.21186 -12.13711 -11.79920 -11.37482 -11.30644 -11.08846 -10.79828 -10.70254 -10.58107 -10.47398 -10.32822 -10.27541 -10.02374 -9.86922 -9.60874 -9.52099 -8.85840 -8.58062 -6.76304 -5.89691 -3.32535 1.66681 2.67800 3.13596 3.25045 3.28942 3.35373 3.36767 3.74151 3.97292 4.32427 4.39310 4.41137 4.83476 5.00539 5.02674 5.09109 5.19421 5.23947 5.29041 5.40261 5.46776 5.49092 5.51621 5.52560 5.69984 5.72510 5.88802 6.02130 6.20256 6.22573 6.31885 6.42397 6.48229 6.57286 6.61916 6.73770 6.77630 6.93594 7.17923 7.20447 7.49494 7.64606 7.69017 8.28954 8.33900 9.10738 9.73644 10.31476 11.18164 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.003303 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.196784 B = 8474.755529 C =10043.026816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.142 3.858 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.128 4.128 14 H 0.069 0.931 15 C 0.130 3.870 16 N -0.716 5.716 17 C 0.510 3.490 18 O -0.552 6.552 19 C -0.138 4.138 20 C -0.104 4.104 21 H 0.108 0.892 22 C 0.069 3.931 23 O -0.360 6.360 24 C 0.489 3.511 25 O -0.453 6.453 26 C -0.185 4.185 27 C 0.180 3.820 28 H 0.254 0.746 29 H 0.018 0.982 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.407 0.593 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 -3.275 10.125 11.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.149 4.149 14 H 0.088 0.912 15 C 0.006 3.994 16 N -0.367 5.367 17 C 0.296 3.704 18 O -0.431 6.431 19 C -0.177 4.177 20 C -0.123 4.123 21 H 0.127 0.873 22 C -0.005 4.005 23 O -0.278 6.278 24 C 0.329 3.671 25 O -0.335 6.335 26 C -0.223 4.223 27 C 0.054 3.946 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.242 0.758 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.105 0.895 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -4.032 -3.588 10.799 12.072 hybrid contribution 0.800 1.244 -0.432 1.541 sum -3.232 -2.344 10.367 11.109 Atomic orbital electron populations 1.70032 1.05147 1.25567 1.53969 1.25043 0.95284 0.98329 1.00902 0.86402 0.78967 0.83340 0.78261 1.20859 1.21608 1.21019 1.19171 0.92591 0.84759 1.41719 0.91730 1.44049 1.36040 1.01795 1.49611 1.21030 0.97561 0.86932 0.92864 1.22061 0.97342 0.98958 0.98862 1.21334 0.98359 0.95712 0.98444 1.22152 0.95923 0.98363 0.98453 0.91225 1.21404 0.98747 0.84069 0.95158 1.46075 1.29836 1.15334 1.45467 1.20469 0.80683 0.89922 0.79343 1.90685 1.46399 1.42532 1.63484 1.21791 0.98731 0.96971 1.00253 1.22146 1.00137 0.93694 0.96286 0.87326 1.24055 1.05029 0.92266 0.79178 1.87092 1.66968 1.35028 1.38712 1.23327 0.75280 0.79444 0.89082 1.90709 1.30392 1.56276 1.56141 1.23153 1.06092 0.99288 0.93802 1.20787 0.88797 0.97462 0.87551 0.93601 0.96435 0.92881 0.92410 0.93082 0.93424 0.92488 0.91684 0.92306 0.75782 0.88179 0.87395 0.88854 0.87684 0.86306 0.86958 0.89520 0.96390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 11.20 55.49 0.62 -23.54 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 20.22 29.59 -169.99 -5.03 15.19 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.25 -6.50 9.58 -15.06 -0.14 -6.64 16 8 H 0.06 1.65 7.89 -52.49 -0.41 1.23 16 9 N -0.59 -13.80 2.99 -172.06 -0.51 -14.31 16 10 C 0.14 2.82 6.54 -3.49 -0.02 2.80 16 11 C -0.13 -2.14 6.10 -26.39 -0.16 -2.30 16 12 C -0.10 -1.53 5.17 -26.69 -0.14 -1.67 16 13 C -0.13 -2.10 2.38 -90.50 -0.22 -2.32 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.13 1.90 5.07 -4.04 -0.02 1.88 16 16 N -0.72 -9.50 5.33 -60.30 -0.32 -9.82 16 17 C 0.51 6.32 7.36 -10.99 -0.08 6.24 16 18 O -0.55 -8.32 15.11 5.55 0.08 -8.24 16 19 C -0.14 -1.16 4.93 -27.88 -0.14 -1.30 16 20 C -0.10 -0.86 2.75 -89.15 -0.24 -1.10 16 21 H 0.11 0.94 8.04 -51.93 -0.42 0.52 16 22 C 0.07 0.64 6.50 37.82 0.25 0.89 16 23 O -0.36 -4.11 11.07 -39.58 -0.44 -4.54 16 24 C 0.49 5.52 8.57 36.54 0.31 5.83 16 25 O -0.45 -6.63 18.00 -18.28 -0.33 -6.96 16 26 C -0.18 -1.40 6.58 -26.54 -0.17 -1.57 16 27 C 0.18 3.80 4.38 -3.71 -0.02 3.79 16 28 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.41 5.22 7.70 -40.82 -0.31 4.91 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.11 0.95 7.33 -51.93 -0.38 0.57 16 42 H 0.12 0.71 7.82 -51.93 -0.41 0.30 16 43 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.98 5.27 -51.93 -0.27 1.71 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 361.55 15.07 5.45 5.45 Total: -1.00 -31.00 361.55 -8.61 -39.61 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.25 Total: 2.66 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.88 Total: 4.51 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.21 Total: -47.67 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.68 Total: -19.74 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.00 -8.61 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752780098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.742 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds