Wall clock time and date at job start Tue Mar 31 2020 04:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99930 * 2 1 4 4 H 1.48509 * 109.46603 * 239.99850 * 3 2 1 5 5 H 1.48501 * 109.47025 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47165 * 120.00012 * 3 2 1 7 7 C 1.38815 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99586 * 162.95293 * 7 2 1 9 9 N 1.36934 * 120.00247 * 343.23400 * 7 2 1 10 10 C 1.46925 * 120.63232 * 151.36187 * 9 7 2 11 11 C 1.53622 * 108.54139 * 126.36511 * 10 9 7 12 12 C 1.53042 * 109.24089 * 54.86141 * 11 10 9 13 13 C 1.53047 * 109.53600 * 298.50424 * 12 11 10 14 14 H 1.09002 * 109.52171 * 301.40161 * 13 12 11 15 15 C 1.52998 * 109.50061 * 181.31953 * 13 12 11 16 16 N 1.46499 * 109.47299 * 175.16217 * 15 13 12 17 17 C 1.34773 * 120.00001 * 179.97438 * 16 15 13 18 18 O 1.21284 * 120.00128 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00027 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46977 * 180.02562 * 19 17 16 21 21 H 1.08997 * 110.61620 * 303.38462 * 20 19 17 22 22 C 1.54268 * 110.69170 * 66.45441 * 20 19 17 23 23 O 1.45595 * 106.36797 * 117.32591 * 22 20 19 24 24 C 1.34517 * 109.64007 * 21.26807 * 23 22 20 25 25 O 1.20825 * 126.43031 * 147.15141 * 24 23 22 26 26 C 1.51792 * 107.14185 * 327.17369 * 24 23 22 27 27 C 1.46931 * 120.62797 * 331.63817 * 9 7 2 28 28 H 0.97005 * 120.00397 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58192 * 246.19955 * 10 9 7 30 30 H 1.08996 * 109.58390 * 6.62190 * 10 9 7 31 31 H 1.08994 * 109.63694 * 294.86407 * 11 10 9 32 32 H 1.09000 * 109.45645 * 174.74052 * 11 10 9 33 33 H 1.09003 * 109.45839 * 178.48963 * 12 11 10 34 34 H 1.08991 * 109.45251 * 58.51792 * 12 11 10 35 35 H 1.09002 * 109.46953 * 295.16967 * 15 13 12 36 36 H 1.08999 * 109.47060 * 55.16196 * 15 13 12 37 37 H 0.97000 * 119.99717 * 0.02562 * 16 15 13 38 38 H 1.09000 * 109.46853 * 300.00288 * 19 17 16 39 39 H 1.08999 * 109.47199 * 60.00044 * 19 17 16 40 40 H 1.08996 * 110.07585 * 236.55423 * 22 20 19 41 41 H 1.09001 * 110.07040 * 358.10064 * 22 20 19 42 42 H 1.08999 * 110.60770 * 272.12129 * 26 24 23 43 43 H 1.08992 * 110.61287 * 149.13882 * 26 24 23 44 44 H 1.08998 * 109.58586 * 353.37676 * 27 9 7 45 45 H 1.09000 * 109.58744 * 113.80031 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0546 -1.2228 -0.2737 9 7 1.3692 -2.3627 0.3431 10 6 1.8079 -3.6515 -0.2095 11 6 2.0649 -4.6202 0.9548 12 6 0.8099 -4.7051 1.8266 13 6 0.4970 -3.3248 2.4091 14 1 1.3471 -2.9756 2.9951 15 6 -0.7385 -3.4174 3.3067 16 7 -0.9696 -2.1239 3.9545 17 6 -2.0108 -1.9681 4.7959 18 8 -2.7563 -2.8989 5.0171 19 6 -2.2489 -0.6374 5.4618 20 6 -3.4844 -0.7301 6.3595 21 1 -4.3528 -1.0525 5.7851 22 6 -3.2279 -1.6861 7.5427 23 8 -3.3328 -0.8807 8.7511 24 6 -4.0445 0.2312 8.4930 25 8 -4.7759 0.8095 9.2614 26 6 -3.7567 0.6228 7.0550 27 6 0.2258 -2.3421 1.2657 28 1 -0.4851 0.8401 -0.0004 29 1 1.0305 -4.0542 -0.8588 30 1 2.7264 -3.5110 -0.7793 31 1 2.9005 -4.2590 1.5542 32 1 2.3009 -5.6082 0.5597 33 1 0.9792 -5.4121 2.6388 34 1 -0.0308 -5.0426 1.2206 35 1 -1.6069 -3.6821 2.7033 36 1 -0.5784 -4.1814 4.0675 37 1 -0.3736 -1.3794 3.7772 38 1 -1.3807 -0.3727 6.0653 39 1 -2.4088 0.1263 4.7007 40 1 -3.9778 -2.4771 7.5540 41 1 -2.2297 -2.1171 7.4658 42 1 -2.8782 1.2657 7.0009 43 1 -4.6218 1.1152 6.6109 44 1 0.1001 -1.3375 1.6694 45 1 -0.6779 -2.6403 0.7342 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752780098.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:48 Heat of formation + Delta-G solvation = -132.364592 kcal Electronic energy + Delta-G solvation = -26066.735802 eV Core-core repulsion = 22276.420501 eV Total energy + Delta-G solvation = -3790.315302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.08213 -40.69395 -39.32631 -38.61028 -36.13680 -35.12868 -34.76603 -32.56274 -31.54988 -30.00400 -28.42447 -27.21917 -26.38209 -23.85784 -22.83195 -22.40044 -22.06826 -21.17505 -20.44539 -18.71516 -18.36831 -17.87890 -17.82138 -17.31125 -16.90127 -16.75118 -16.34814 -15.77125 -15.70008 -15.24898 -15.03522 -14.66713 -14.49889 -14.36596 -14.14408 -14.01799 -13.77098 -13.72799 -13.35531 -12.91571 -12.88393 -12.82685 -12.56428 -12.47509 -12.22510 -12.07067 -11.97371 -11.76517 -11.53535 -11.47877 -11.36890 -11.26294 -11.06643 -10.73662 -10.50687 -9.96532 -8.62377 -7.83058 -5.29198 0.81313 1.51377 1.52928 1.59716 1.71333 2.29418 2.33779 2.54820 3.00406 3.26420 3.29402 3.62318 3.65663 3.70354 4.02810 4.05688 4.12263 4.18977 4.36476 4.38176 4.38871 4.53315 4.57252 4.67624 4.69296 4.74289 4.85251 4.87579 4.90994 4.93967 5.05735 5.06365 5.17708 5.26313 5.39908 5.42391 5.55364 5.58674 5.69391 5.70863 5.82210 6.32014 6.43394 6.62408 7.19808 7.29357 7.89898 8.42631 9.22026 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.014525 B = 0.003303 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.196784 B = 8474.755529 C =10043.026816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.041 4.041 3 Si 0.962 3.038 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.267 4.267 8 H 0.061 0.939 9 N -0.612 5.612 10 C 0.135 3.865 11 C -0.122 4.122 12 C -0.100 4.100 13 C -0.112 4.112 14 H 0.071 0.929 15 C 0.139 3.861 16 N -0.720 5.720 17 C 0.507 3.493 18 O -0.581 6.581 19 C -0.129 4.129 20 C -0.097 4.097 21 H 0.105 0.895 22 C 0.067 3.933 23 O -0.376 6.376 24 C 0.486 3.514 25 O -0.495 6.495 26 C -0.169 4.169 27 C 0.190 3.810 28 H 0.251 0.749 29 H 0.009 0.991 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.409 0.591 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.128 0.872 44 H 0.067 0.933 45 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.072 -3.263 10.773 11.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.790 3.210 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.397 4.397 8 H 0.079 0.921 9 N -0.335 5.335 10 C 0.009 3.991 11 C -0.161 4.161 12 C -0.138 4.138 13 C -0.132 4.132 14 H 0.089 0.911 15 C 0.014 3.986 16 N -0.371 5.371 17 C 0.295 3.705 18 O -0.462 6.462 19 C -0.169 4.169 20 C -0.116 4.116 21 H 0.123 0.877 22 C -0.006 4.006 23 O -0.294 6.294 24 C 0.329 3.671 25 O -0.381 6.381 26 C -0.206 4.206 27 C 0.065 3.935 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.245 0.755 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.162 0.838 43 H 0.146 0.854 44 H 0.085 0.915 45 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -2.927 -3.603 11.442 12.348 hybrid contribution 0.480 1.158 -0.709 1.440 sum -2.447 -2.445 10.733 11.277 Atomic orbital electron populations 1.70175 1.06325 1.25896 1.55070 1.25684 0.95961 1.00970 1.01053 0.85442 0.77669 0.79629 0.78231 1.21103 1.21863 1.20016 1.19441 0.92733 0.86048 1.41477 0.92104 1.44352 1.36306 1.02356 1.50510 1.21200 0.96916 0.86534 0.94433 1.21938 0.97653 0.99152 0.97326 1.21364 0.97794 0.95425 0.99215 1.21904 0.96704 0.97850 0.96769 0.91087 1.21212 0.97041 0.85315 0.95007 1.46115 1.30402 1.14908 1.45654 1.21128 0.79651 0.91021 0.78678 1.90675 1.47168 1.43944 1.64371 1.21819 0.99693 0.94747 1.00608 1.22088 1.00020 0.93806 0.95725 0.87656 1.24135 1.05226 0.92246 0.78987 1.87068 1.66754 1.35519 1.40097 1.23923 0.74145 0.78906 0.90174 1.90684 1.32273 1.57364 1.57757 1.23136 1.07771 0.99105 0.90625 1.20591 0.86989 0.97679 0.88266 0.93974 0.97350 0.93233 0.92429 0.90175 0.90261 0.92891 0.93386 0.90869 0.75495 0.85698 0.85876 0.89147 0.87244 0.83823 0.85387 0.91479 0.99733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.34 11.20 21.65 0.24 -50.10 16 2 C -0.04 -2.10 4.92 84.86 0.42 -1.68 16 3 Si 0.96 41.39 29.59 68.60 2.03 43.42 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.27 -13.78 9.58 84.03 0.81 -12.98 16 8 H 0.06 3.11 7.89 -2.91 -0.02 3.09 16 9 N -0.61 -28.67 2.99 -698.26 -2.08 -30.76 16 10 C 0.13 5.28 6.54 86.51 0.57 5.85 16 11 C -0.12 -3.65 6.10 30.82 0.19 -3.46 16 12 C -0.10 -2.82 5.17 30.62 0.16 -2.67 16 13 C -0.11 -3.54 2.38 -10.72 -0.03 -3.57 16 14 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 15 C 0.14 3.90 5.07 86.38 0.44 4.34 16 16 N -0.72 -18.21 5.33 -463.07 -2.47 -20.68 16 17 C 0.51 11.76 7.36 87.66 0.65 12.41 16 18 O -0.58 -16.88 15.11 -3.04 -0.05 -16.93 16 19 C -0.13 -1.84 4.93 29.85 0.15 -1.69 16 20 C -0.10 -1.40 2.75 -9.84 -0.03 -1.43 16 21 H 0.11 1.64 8.04 -2.39 -0.02 1.62 16 22 C 0.07 1.17 6.50 72.41 0.47 1.64 16 23 O -0.38 -8.25 11.07 -54.66 -0.61 -8.86 16 24 C 0.49 10.51 8.57 71.59 0.61 11.12 16 25 O -0.50 -14.49 18.00 21.52 0.39 -14.10 16 26 C -0.17 -2.11 6.58 30.72 0.20 -1.91 16 27 C 0.19 8.13 4.38 86.36 0.38 8.51 16 28 H 0.25 13.19 8.31 -92.70 -0.77 12.42 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.41 10.02 7.70 -92.71 -0.71 9.30 16 38 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 41 H 0.11 1.81 7.33 -2.39 -0.02 1.79 16 42 H 0.14 1.16 7.82 -2.39 -0.02 1.14 16 43 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 3.11 5.27 -2.39 -0.01 3.10 16 45 H -0.02 -0.75 8.14 -2.39 -0.02 -0.77 16 Total: -1.00 -68.23 361.55 2.71 -65.53 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.27 Total: 17.98 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 4.98 Total: 14.49 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -4.31 Total: -101.53 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.26 Total: -39.89 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -68.23 2.71 -65.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752780098.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.839 kcal (2) G-P(sol) polarization free energy of solvation -68.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds