Wall clock time and date at job start Tue Mar 31 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.49623 * 2 1 4 4 C 1.53039 * 109.52388 * 239.92053 * 2 1 3 5 5 C 1.53073 * 109.65610 * 178.73487 * 4 2 1 6 6 C 1.53187 * 109.29743 * 61.14872 * 5 4 2 7 7 N 1.46921 * 108.89388 * 305.57826 * 6 5 4 8 8 C 1.34784 * 120.62901 * 233.51374 * 7 6 5 9 9 O 1.21349 * 119.99821 * 171.44996 * 8 7 6 10 10 C 1.49451 * 120.00066 * 351.45707 * 8 7 6 11 11 O 1.21347 * 119.99612 * 353.96494 * 10 8 7 12 12 N 1.34773 * 119.99924 * 173.97006 * 10 8 7 13 13 C 1.47028 * 125.64776 * 0.02562 * 12 10 8 14 14 C 1.54323 * 107.27049 * 181.02331 * 13 12 10 15 15 C 1.55161 * 102.94259 * 22.18950 * 14 13 12 16 16 O 1.42904 * 111.00542 * 82.61023 * 15 14 13 17 17 C 1.50699 * 111.00685 * 206.42456 * 15 14 13 18 18 H 1.08003 * 119.99766 * 356.85445 * 17 15 14 19 19 C 1.37875 * 120.00087 * 176.85882 * 17 15 14 20 20 N 1.31513 * 120.00179 * 351.79027 * 19 17 15 21 21 Si 1.86806 * 119.99934 * 171.79341 * 19 17 15 22 22 H 1.48490 * 109.46958 * 94.98019 * 21 19 17 23 23 H 1.48493 * 109.47103 * 214.98359 * 21 19 17 24 24 H 1.48505 * 109.46798 * 334.97949 * 21 19 17 25 25 C 1.47424 * 125.64956 * 179.71142 * 12 10 8 26 26 C 1.46924 * 118.74168 * 53.53859 * 7 6 5 27 27 H 1.09004 * 109.47281 * 299.93394 * 1 2 3 28 28 H 1.08994 * 109.47322 * 59.93525 * 1 2 3 29 29 H 1.09003 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.45716 * 298.68499 * 4 2 1 31 31 H 1.08997 * 109.46190 * 58.64352 * 4 2 1 32 32 H 1.09003 * 109.38748 * 301.26781 * 5 4 2 33 33 H 1.08998 * 109.61797 * 181.16654 * 5 4 2 34 34 H 1.09004 * 109.58726 * 185.71863 * 6 5 4 35 35 H 1.08999 * 109.58460 * 65.44105 * 6 5 4 36 36 H 1.09006 * 109.87738 * 300.43822 * 13 12 10 37 37 H 1.08998 * 109.88472 * 61.45135 * 13 12 10 38 38 H 1.09000 * 110.71929 * 140.54875 * 14 13 12 39 39 H 1.08989 * 110.72188 * 263.83040 * 14 13 12 40 40 H 0.96702 * 114.00164 * 180.02562 * 16 15 14 41 41 H 0.96995 * 119.99937 * 180.02562 * 20 19 17 42 42 H 1.08995 * 110.36865 * 274.74786 * 25 12 10 43 43 H 1.09009 * 110.36139 * 37.07216 * 25 12 10 44 44 H 1.09005 * 109.58642 * 66.17552 * 26 7 6 45 45 H 1.08995 * 109.58972 * 186.46048 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7229 -1.2482 5 6 3.5719 -0.6972 -1.2673 6 6 4.1059 -1.4254 -0.0299 7 7 3.5046 -0.8280 1.1702 8 6 4.2807 -0.3848 2.1791 9 8 3.7880 0.2445 3.0922 10 6 5.7481 -0.6683 2.1732 11 8 6.2234 -1.3887 1.3201 12 7 6.5434 -0.1239 3.1153 13 6 6.1014 0.7621 4.2022 14 6 7.3553 1.1547 5.0117 15 6 8.5086 0.9238 3.9998 16 8 8.6564 2.0455 3.1268 17 6 9.8017 0.6245 4.7135 18 1 9.8401 0.6451 5.7927 19 6 10.9357 0.3246 3.9889 20 7 10.8560 0.1406 2.6892 21 14 12.5853 0.1795 4.8534 22 1 12.8479 -1.2444 5.1827 23 1 13.6581 0.6873 3.9611 24 1 12.5610 0.9804 6.1037 25 6 7.9995 -0.3234 3.2305 26 6 2.0413 -0.7234 1.2499 27 1 -0.3634 0.5128 0.8906 28 1 -0.3633 0.5148 -0.8893 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6978 -1.7573 -1.2350 31 1 1.6588 -0.2246 -2.1388 32 1 3.9165 0.3368 -1.2580 33 1 3.9350 -1.1941 -2.1669 34 1 5.1902 -1.3228 0.0149 35 1 3.8408 -2.4813 -0.0845 36 1 5.6343 1.6547 3.7860 37 1 5.3928 0.2375 4.8431 38 1 7.3088 2.2018 5.3110 39 1 7.4706 0.5085 5.8817 40 1 9.3651 1.9470 2.4763 41 1 11.6537 -0.0707 2.1795 42 1 8.2146 -1.2324 3.7921 43 1 8.4553 -0.3707 2.2414 44 1 1.6057 -1.7214 1.2983 45 1 1.7632 -0.1597 2.1403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592437310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:12 Heat of formation + Delta-G solvation = -109.663202 kcal Electronic energy + Delta-G solvation = -27073.954070 eV Core-core repulsion = 23284.623175 eV Total energy + Delta-G solvation = -3789.330895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69215 -38.92580 -37.53103 -37.29770 -34.50323 -33.58552 -32.26889 -31.92946 -30.25851 -27.98356 -27.26974 -26.27904 -25.23647 -23.27952 -22.36859 -21.67812 -20.13510 -19.67043 -18.78521 -17.27017 -16.75440 -16.68185 -15.90225 -15.45721 -15.27189 -15.10645 -14.59655 -14.41843 -14.33048 -14.08806 -13.59755 -13.19899 -13.10229 -12.97322 -12.87945 -12.67629 -12.29458 -12.23928 -11.91057 -11.73707 -11.55431 -11.27668 -11.16808 -11.05031 -11.00090 -10.86454 -10.57329 -10.55999 -10.52497 -10.36755 -10.22472 -9.34754 -8.82145 -8.76369 -8.67870 -8.42214 -7.88962 -6.32792 -4.41969 1.79464 2.60423 3.17998 3.26631 3.30575 3.57046 3.77569 4.23511 4.46078 4.59922 4.64593 4.72841 4.94074 4.95636 5.18718 5.28426 5.33795 5.44177 5.47769 5.53073 5.57905 5.65304 5.77256 5.81141 5.84309 5.88619 5.92995 5.99308 6.03030 6.13555 6.24259 6.30427 6.46929 6.52007 6.72626 6.83129 6.88819 7.18719 7.23765 7.29270 7.69639 7.82356 7.96387 8.08467 8.45096 8.62048 9.25841 9.30378 10.73386 Molecular weight = 310.17amu Principal moments of inertia in cm(-1) A = 0.029557 B = 0.003336 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.105800 B = 8390.221924 C = 8904.742112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.136 4.136 6 C 0.067 3.933 7 N -0.588 5.588 8 C 0.511 3.489 9 O -0.521 6.521 10 C 0.509 3.491 11 O -0.530 6.530 12 N -0.571 5.571 13 C 0.111 3.889 14 C -0.121 4.121 15 C 0.248 3.752 16 O -0.580 6.580 17 C -0.539 4.539 18 H 0.069 0.931 19 C 0.071 3.929 20 N -0.891 5.891 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.093 3.907 26 C 0.113 3.887 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.146 0.854 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.380 0.620 41 H 0.270 0.730 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.925 -2.126 -5.824 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.174 4.174 6 C -0.054 4.054 7 N -0.322 5.322 8 C 0.295 3.705 9 O -0.397 6.397 10 C 0.292 3.708 11 O -0.411 6.411 12 N -0.302 5.302 13 C -0.012 4.012 14 C -0.159 4.159 15 C 0.207 3.793 16 O -0.388 6.388 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.529 5.529 21 Si 0.730 3.270 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.028 4.028 26 C -0.009 4.009 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.163 0.837 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.358 -2.000 -5.599 17.405 hybrid contribution 1.217 -0.458 -0.076 1.302 sum -15.142 -2.458 -5.676 16.356 Atomic orbital electron populations 1.21759 0.94396 1.01965 1.02045 1.21497 0.95836 1.00312 0.94976 0.90672 1.21620 0.95803 1.00583 0.97290 1.21960 0.95484 1.01642 0.98310 1.22898 1.04102 0.96171 0.82244 1.47906 1.06278 1.59814 1.18157 1.20362 0.88145 0.79530 0.82506 1.90703 1.75154 1.38008 1.35811 1.19600 0.86627 0.82112 0.82460 1.90425 1.75368 1.38909 1.36348 1.48728 1.10664 1.44355 1.26433 1.22156 0.97187 0.93475 0.88380 1.22711 0.93476 1.01760 0.97954 1.19658 0.91864 0.81899 0.85845 1.86131 1.59037 1.43070 1.50577 1.21469 0.93421 1.48958 0.93879 0.91321 1.25092 0.99787 0.93292 0.95086 1.69776 1.30167 1.46806 1.06167 0.86392 0.82617 0.78339 0.79607 1.20525 1.20896 1.19592 1.23576 0.74443 1.01133 1.03628 1.21737 0.79171 1.00788 0.99207 0.92372 0.92328 0.92521 0.91853 0.91830 0.91640 0.90536 0.83730 0.91762 0.91397 0.91512 0.90522 0.90324 0.77007 0.91971 0.91376 0.88963 0.91392 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.20 37.16 0.34 -0.73 16 2 C -0.11 -1.03 2.87 -90.50 -0.26 -1.29 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.12 -1.03 5.16 -26.67 -0.14 -1.17 16 5 C -0.14 -1.45 6.09 -26.60 -0.16 -1.61 16 6 C 0.07 0.89 5.99 -3.72 -0.02 0.87 16 7 N -0.59 -8.56 2.97 -173.28 -0.52 -9.07 16 8 C 0.51 9.12 7.69 -11.58 -0.09 9.03 16 9 O -0.52 -9.85 13.59 5.50 0.07 -9.77 16 10 C 0.51 10.29 7.78 -11.59 -0.09 10.20 16 11 O -0.53 -11.20 13.42 5.50 0.07 -11.13 16 12 N -0.57 -12.13 3.32 -170.88 -0.57 -12.70 16 13 C 0.11 2.16 5.49 -3.06 -0.02 2.14 16 14 C -0.12 -2.46 6.12 -24.89 -0.15 -2.61 16 15 C 0.25 5.93 0.89 -89.50 -0.08 5.85 16 16 O -0.58 -14.53 13.20 -35.23 -0.47 -15.00 16 17 C -0.54 -13.72 8.24 -34.44 -0.28 -14.01 16 18 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16 19 C 0.07 1.80 5.23 -17.82 -0.09 1.71 16 20 N -0.89 -23.08 10.74 55.43 0.60 -22.48 16 21 Si 0.90 19.92 29.55 -169.99 -5.02 14.90 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 C 0.09 2.19 5.42 -2.41 -0.01 2.17 16 26 C 0.11 1.32 5.73 -3.71 -0.02 1.30 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.15 2.35 4.29 -54.94 -0.24 2.11 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.34 7.72 -51.93 -0.40 0.94 16 37 H 0.07 1.21 7.56 -51.93 -0.39 0.82 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.08 1.49 8.03 -51.94 -0.42 1.08 16 40 H 0.38 9.68 7.49 45.56 0.34 10.02 16 41 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.07 1.64 8.03 -51.93 -0.42 1.23 16 43 H 0.09 2.40 7.31 -51.92 -0.38 2.02 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.17 7.00 -51.93 -0.36 0.80 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -27.67 353.13 -8.05 -35.71 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -6.46 Total: 12.39 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -1.08 Total: 11.84 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.49 Total: -44.25 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.32 Total: -35.90 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.67 -8.05 -35.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592437310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.952 kcal (2) G-P(sol) polarization free energy of solvation -27.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds