Wall clock time and date at job start Tue Mar 31 2020 04:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47484 * 120.00227 * 2 1 3 5 5 N 1.46501 * 109.47412 * 180.02562 * 4 2 1 6 6 C 1.34774 * 120.00093 * 180.02562 * 5 4 2 7 7 O 1.21588 * 119.99891 * 359.97438 * 6 5 4 8 8 C 1.47636 * 120.00041 * 179.97438 * 6 5 4 9 9 C 1.40016 * 119.89859 * 359.71751 * 8 6 5 10 10 C 1.36316 * 120.10792 * 179.75900 * 9 8 6 11 11 C 1.40885 * 119.89294 * 0.52231 * 10 9 8 12 12 C 1.41106 * 120.10510 * 179.71399 * 11 10 9 13 13 H 1.08003 * 120.00323 * 204.64121 * 12 11 10 14 14 C 1.40230 * 119.99607 * 24.64948 * 12 11 10 15 15 N 1.30639 * 120.00424 * 17.86827 * 14 12 11 16 16 Si 1.86804 * 119.99489 * 197.87701 * 14 12 11 17 17 H 1.48497 * 109.47403 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47306 * 119.99853 * 16 14 12 19 19 H 1.48508 * 109.46872 * 239.99473 * 16 14 12 20 20 C 1.40892 * 119.79395 * 359.73270 * 11 10 9 21 21 C 1.36320 * 119.88933 * 0.02562 * 20 11 10 22 22 S 1.81400 * 109.47380 * 240.00584 * 2 1 3 23 23 C 1.81400 * 101.92266 * 59.99615 * 22 2 1 24 24 O 1.42097 * 108.57941 * 174.48447 * 22 2 1 25 25 O 1.42103 * 108.57400 * 305.50994 * 22 2 1 26 26 H 1.08996 * 109.47310 * 299.99718 * 1 2 3 27 27 H 1.09003 * 109.47398 * 59.99872 * 1 2 3 28 28 H 1.09006 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47081 * 300.00094 * 4 2 1 30 30 H 1.09002 * 109.47162 * 59.99842 * 4 2 1 31 31 H 0.96995 * 119.99758 * 359.97438 * 5 4 2 32 32 H 1.07999 * 119.94137 * 0.02879 * 9 8 6 33 33 H 1.07997 * 120.04946 * 180.22922 * 10 9 8 34 34 H 0.97000 * 120.00010 * 180.02562 * 15 14 12 35 35 H 1.07997 * 120.05286 * 179.97438 * 20 11 10 36 36 H 1.08006 * 119.94424 * 179.97438 * 21 20 11 37 37 H 1.08999 * 109.46863 * 60.00232 * 23 22 2 38 38 H 1.08996 * 109.46844 * 180.02562 * 23 22 2 39 39 H 1.08999 * 109.47225 * 300.00454 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5050 -0.7207 1.2495 6 6 4.1789 -1.3047 2.2600 7 8 3.5710 -1.8316 3.1717 8 6 5.6553 -1.3046 2.2600 9 6 6.3532 -0.7025 1.2061 10 6 7.7163 -0.6956 1.2042 11 6 8.4230 -1.3054 2.2595 12 6 9.8340 -1.3063 2.2590 13 1 10.3738 -2.0694 2.8001 14 6 10.5354 -0.3161 1.5561 15 7 9.9300 0.7856 1.2006 16 14 12.3355 -0.5727 1.1279 17 1 12.7829 -1.8928 1.6399 18 1 12.5045 -0.5302 -0.3469 19 1 13.1504 0.5014 1.7506 20 6 7.7164 -1.9148 3.3151 21 6 6.3532 -1.9123 3.3108 22 16 2.1347 -0.8550 -1.4812 23 6 1.4228 0.1517 -2.8118 24 8 3.5496 -0.7328 -1.5285 25 8 1.5479 -2.1483 -1.5285 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -0.2075 2.1392 30 1 1.6767 -1.7489 1.2492 31 1 3.9899 -0.3007 0.5220 32 1 5.8105 -0.2388 0.3955 33 1 8.2536 -0.2276 0.3927 34 1 10.4152 1.4703 0.7141 35 1 8.2538 -2.3839 4.1260 36 1 5.8106 -2.3796 4.1194 37 1 1.7893 1.1749 -2.7291 38 1 1.7152 -0.2624 -3.7767 39 1 0.3360 0.1472 -2.7291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534723448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:27 Heat of formation + Delta-G solvation = -94.381184 kcal Electronic energy + Delta-G solvation = -23386.619260 eV Core-core repulsion = 19807.152157 eV Total energy + Delta-G solvation = -3579.467103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.17988 -37.20547 -37.19424 -36.22276 -35.76509 -33.81914 -32.78378 -30.27804 -29.68288 -29.36225 -26.87174 -25.30966 -22.89925 -21.77599 -20.82227 -19.62659 -18.96506 -17.46858 -17.37288 -17.08253 -16.19388 -16.04933 -15.62886 -15.32069 -14.67568 -14.26969 -13.93547 -13.69951 -13.58745 -13.50683 -13.24212 -13.08753 -12.74039 -12.57631 -12.49744 -12.21881 -12.13190 -12.01572 -11.85030 -11.73400 -11.31598 -11.24601 -11.20548 -10.90307 -10.60800 -10.47927 -9.99158 -9.49818 -9.28817 -8.98629 -8.72079 -7.64108 -7.48590 -6.98601 -4.54874 -0.29637 2.27138 2.45405 2.93890 2.98756 3.04383 3.11927 3.38793 3.47427 3.78071 3.82302 3.89058 4.17316 4.32178 4.46514 4.60856 4.68288 4.75154 5.04764 5.20275 5.31552 5.53309 5.60467 5.65031 5.65840 6.09663 6.21490 6.38077 6.81882 6.85419 6.88765 7.10501 7.20006 7.50640 7.69894 7.85958 7.93209 8.12961 8.21021 8.46840 8.68917 8.81993 9.04965 9.93383 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.003434 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.012415 B = 8151.511048 C = 9122.846265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.589 4.589 3 H 0.143 0.857 4 C 0.139 3.861 5 N -0.758 5.758 6 C 0.576 3.424 7 O -0.574 6.574 8 C -0.287 4.287 9 C -0.059 4.059 10 C -0.179 4.179 11 C 0.129 3.871 12 C -0.442 4.442 13 H 0.085 0.915 14 C 0.074 3.926 15 N -0.771 5.771 16 Si 0.913 3.087 17 H -0.257 1.257 18 H -0.269 1.269 19 H -0.272 1.272 20 C -0.240 4.240 21 C -0.021 4.021 22 S 2.416 3.584 23 C -0.660 4.660 24 O -0.925 6.925 25 O -0.930 6.930 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.408 0.592 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.286 0.714 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.500 4.437 -8.717 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.698 4.698 3 H 0.161 0.839 4 C 0.013 3.987 5 N -0.417 5.417 6 C 0.371 3.629 7 O -0.456 6.456 8 C -0.291 4.291 9 C -0.079 4.079 10 C -0.198 4.198 11 C 0.126 3.874 12 C -0.470 4.470 13 H 0.103 0.897 14 C -0.147 4.147 15 N -0.394 5.394 16 Si 0.736 3.264 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.197 1.197 20 C -0.259 4.259 21 C -0.040 4.040 22 S 2.596 3.404 23 C -0.809 4.809 24 O -0.921 6.921 25 O -0.927 6.927 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.247 0.753 32 H 0.114 0.886 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.361 3.565 -8.262 16.947 hybrid contribution 0.486 1.175 -0.614 1.412 sum -13.875 4.739 -8.876 17.139 Atomic orbital electron populations 1.21638 0.89108 1.04645 1.04502 1.30356 1.07495 1.14096 1.17851 0.83876 1.20914 0.82208 1.00549 0.94993 1.46327 1.05291 1.62092 1.27999 1.18594 0.88404 0.75901 0.79971 1.90629 1.70775 1.47387 1.36790 1.18862 0.89529 1.17974 1.02738 1.20597 0.94985 0.96737 0.95547 1.20982 0.92403 1.06208 1.00189 1.17808 0.93292 0.87282 0.89011 1.19880 0.91692 1.09760 1.25671 0.89681 1.26100 1.01583 0.93856 0.93144 1.69755 1.38977 1.04344 1.26356 0.86178 0.81024 0.79941 0.79218 1.18071 1.19382 1.19730 1.20705 0.93150 1.11638 1.00445 1.20354 0.93862 0.94470 0.95336 1.08309 0.76407 0.77310 0.78398 1.30339 1.13991 1.16732 1.19862 1.93609 1.26451 1.86791 1.85262 1.93596 1.79377 1.34243 1.85533 0.89781 0.90987 0.90031 0.89580 0.90172 0.75263 0.88625 0.86126 0.90321 0.88374 0.88095 0.85177 0.85128 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.94 37.15 0.33 -0.48 16 2 C -0.59 -5.04 2.87 -26.74 -0.08 -5.12 16 3 H 0.14 0.86 8.14 -51.92 -0.42 0.44 16 4 C 0.14 1.88 5.12 -4.04 -0.02 1.86 16 5 N -0.76 -13.53 5.11 -61.31 -0.31 -13.85 16 6 C 0.58 12.92 7.76 -12.43 -0.10 12.82 16 7 O -0.57 -13.98 16.32 5.29 0.09 -13.90 16 8 C -0.29 -6.94 5.89 -104.73 -0.62 -7.56 16 9 C -0.06 -1.42 9.47 -39.61 -0.38 -1.80 16 10 C -0.18 -4.59 8.63 -39.27 -0.34 -4.93 16 11 C 0.13 3.40 5.58 -106.80 -0.60 2.81 16 12 C -0.44 -11.27 9.04 -37.75 -0.34 -11.62 16 13 H 0.09 2.07 7.91 -52.48 -0.42 1.65 16 14 C 0.07 1.77 5.14 -17.31 -0.09 1.68 16 15 N -0.77 -18.84 10.95 55.56 0.61 -18.23 16 16 Si 0.91 17.61 29.60 -169.99 -5.03 12.58 16 17 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 18 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 C -0.24 -5.99 9.73 -39.27 -0.38 -6.37 16 21 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 22 S 2.42 24.67 4.76 -107.50 -0.51 24.16 16 23 C -0.66 -3.46 10.17 101.05 1.03 -2.44 16 24 O -0.92 -13.34 15.82 -57.83 -0.91 -14.25 16 25 O -0.93 -12.77 17.91 -57.83 -1.04 -13.80 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.20 6.56 -51.93 -0.34 -0.14 16 28 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.41 6.91 4.30 -40.82 -0.18 6.73 16 32 H 0.10 2.04 6.37 -52.49 -0.33 1.71 16 33 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 34 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 35 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.10 2.37 7.63 -52.48 -0.40 1.97 16 37 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.13 0.38 6.87 -51.92 -0.36 0.02 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -34.71 338.72 -8.82 -43.53 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -4.86 Total: 10.69 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -1.95 Total: -22.03 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.30 Total: -32.08 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.86 Total: -41.95 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 24.67 SS G_CDS: -0.51 Total: 24.16 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.71 -8.82 -43.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534723448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.853 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds