Wall clock time and date at job start Tue Mar 31 2020 04:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47484 * 120.00227 * 2 1 3 5 5 N 1.46501 * 109.47412 * 180.02562 * 4 2 1 6 6 C 1.34774 * 120.00093 * 180.02562 * 5 4 2 7 7 O 1.21588 * 119.99891 * 359.97438 * 6 5 4 8 8 C 1.47636 * 120.00041 * 179.97438 * 6 5 4 9 9 C 1.40016 * 119.89859 * 359.71751 * 8 6 5 10 10 C 1.36316 * 120.10792 * 179.75900 * 9 8 6 11 11 C 1.40885 * 119.89294 * 0.52231 * 10 9 8 12 12 C 1.41106 * 120.10510 * 179.71399 * 11 10 9 13 13 H 1.08003 * 120.00323 * 204.64121 * 12 11 10 14 14 C 1.40230 * 119.99607 * 24.64948 * 12 11 10 15 15 N 1.30639 * 120.00424 * 17.86827 * 14 12 11 16 16 Si 1.86804 * 119.99489 * 197.87701 * 14 12 11 17 17 H 1.48497 * 109.47403 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47306 * 119.99853 * 16 14 12 19 19 H 1.48508 * 109.46872 * 239.99473 * 16 14 12 20 20 C 1.40892 * 119.79395 * 359.73270 * 11 10 9 21 21 C 1.36320 * 119.88933 * 0.02562 * 20 11 10 22 22 S 1.81400 * 109.47380 * 240.00584 * 2 1 3 23 23 C 1.81400 * 101.92266 * 59.99615 * 22 2 1 24 24 O 1.42097 * 108.57941 * 174.48447 * 22 2 1 25 25 O 1.42103 * 108.57400 * 305.50994 * 22 2 1 26 26 H 1.08996 * 109.47310 * 299.99718 * 1 2 3 27 27 H 1.09003 * 109.47398 * 59.99872 * 1 2 3 28 28 H 1.09006 * 109.47083 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47081 * 300.00094 * 4 2 1 30 30 H 1.09002 * 109.47162 * 59.99842 * 4 2 1 31 31 H 0.96995 * 119.99758 * 359.97438 * 5 4 2 32 32 H 1.07999 * 119.94137 * 0.02879 * 9 8 6 33 33 H 1.07997 * 120.04946 * 180.22922 * 10 9 8 34 34 H 0.97000 * 120.00010 * 180.02562 * 15 14 12 35 35 H 1.07997 * 120.05286 * 179.97438 * 20 11 10 36 36 H 1.08006 * 119.94424 * 179.97438 * 21 20 11 37 37 H 1.08999 * 109.46863 * 60.00232 * 23 22 2 38 38 H 1.08996 * 109.46844 * 180.02562 * 23 22 2 39 39 H 1.08999 * 109.47225 * 300.00454 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5050 -0.7207 1.2495 6 6 4.1789 -1.3047 2.2600 7 8 3.5710 -1.8316 3.1717 8 6 5.6553 -1.3046 2.2600 9 6 6.3532 -0.7025 1.2061 10 6 7.7163 -0.6956 1.2042 11 6 8.4230 -1.3054 2.2595 12 6 9.8340 -1.3063 2.2590 13 1 10.3738 -2.0694 2.8001 14 6 10.5354 -0.3161 1.5561 15 7 9.9300 0.7856 1.2006 16 14 12.3355 -0.5727 1.1279 17 1 12.7829 -1.8928 1.6399 18 1 12.5045 -0.5302 -0.3469 19 1 13.1504 0.5014 1.7506 20 6 7.7164 -1.9148 3.3151 21 6 6.3532 -1.9123 3.3108 22 16 2.1347 -0.8550 -1.4812 23 6 1.4228 0.1517 -2.8118 24 8 3.5496 -0.7328 -1.5285 25 8 1.5479 -2.1483 -1.5285 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -0.2075 2.1392 30 1 1.6767 -1.7489 1.2492 31 1 3.9899 -0.3007 0.5220 32 1 5.8105 -0.2388 0.3955 33 1 8.2536 -0.2276 0.3927 34 1 10.4152 1.4703 0.7141 35 1 8.2538 -2.3839 4.1260 36 1 5.8106 -2.3796 4.1194 37 1 1.7893 1.1749 -2.7291 38 1 1.7152 -0.2624 -3.7767 39 1 0.3360 0.1472 -2.7291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534723448.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:27 Heat of formation + Delta-G solvation = -120.092553 kcal Electronic energy + Delta-G solvation = -23387.734188 eV Core-core repulsion = 19807.152157 eV Total energy + Delta-G solvation = -3580.582032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88339 -39.00813 -38.09542 -37.24056 -36.85892 -35.68572 -33.98481 -31.98534 -31.31218 -30.32831 -28.27329 -26.72424 -23.90063 -23.44787 -22.73337 -21.30842 -19.82362 -19.37310 -18.58868 -18.16509 -17.45298 -17.13921 -16.96483 -16.59527 -16.01779 -15.75718 -15.65257 -15.08355 -14.84064 -14.47539 -14.23781 -13.98594 -13.92024 -13.77528 -13.72120 -13.57393 -13.24871 -13.16332 -13.07197 -13.04088 -12.84624 -12.63328 -12.39065 -12.37376 -11.94121 -11.76795 -11.38633 -11.22394 -11.12719 -10.80211 -10.22496 -9.59180 -9.43606 -8.80145 -6.49459 -1.01418 0.40080 1.14221 1.38385 1.42446 1.56196 1.76628 2.07006 2.17721 2.22130 2.65103 2.76170 3.04524 3.36218 3.67179 3.71283 4.04090 4.10498 4.18349 4.25858 4.33293 4.43315 4.45177 4.62618 4.69817 4.84054 4.92089 4.98011 5.02040 5.14157 5.25507 5.28427 5.39254 5.57764 5.79747 5.92133 5.98851 6.20393 6.52462 6.56553 6.75463 6.87366 7.32014 8.15605 Molecular weight = 311.10amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.003434 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.012415 B = 8151.511048 C = 9122.846265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.571 4.571 3 H 0.177 0.823 4 C 0.125 3.875 5 N -0.746 5.746 6 C 0.572 3.428 7 O -0.600 6.600 8 C -0.303 4.303 9 C -0.055 4.055 10 C -0.199 4.199 11 C 0.103 3.897 12 C -0.470 4.470 13 H 0.088 0.912 14 C 0.036 3.964 15 N -0.796 5.796 16 Si 0.990 3.010 17 H -0.256 1.256 18 H -0.261 1.261 19 H -0.261 1.261 20 C -0.252 4.252 21 C -0.030 4.030 22 S 2.391 3.609 23 C -0.629 4.629 24 O -0.982 6.982 25 O -0.981 6.981 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.413 0.587 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.298 0.702 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.457 6.481 -10.476 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.681 4.681 3 H 0.194 0.806 4 C 0.001 3.999 5 N -0.403 5.403 6 C 0.366 3.634 7 O -0.484 6.484 8 C -0.307 4.307 9 C -0.074 4.074 10 C -0.218 4.218 11 C 0.099 3.901 12 C -0.497 4.497 13 H 0.106 0.894 14 C -0.183 4.183 15 N -0.420 5.420 16 Si 0.810 3.190 17 H -0.180 1.180 18 H -0.185 1.185 19 H -0.186 1.186 20 C -0.272 4.272 21 C -0.049 4.049 22 S 2.579 3.421 23 C -0.783 4.783 24 O -0.978 6.978 25 O -0.978 6.978 26 H 0.113 0.887 27 H 0.132 0.868 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.253 0.747 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.179 0.821 38 H 0.157 0.843 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -15.331 5.590 -10.020 19.149 hybrid contribution 0.646 0.627 -0.108 0.907 sum -14.685 6.217 -10.129 18.892 Atomic orbital electron populations 1.21821 0.86422 1.04984 1.07158 1.30254 1.09510 1.14552 1.13818 0.80592 1.21232 0.79396 1.00983 0.98337 1.46254 1.07369 1.60275 1.26445 1.18415 0.87925 0.76302 0.80775 1.90600 1.71045 1.48724 1.38044 1.19186 0.91061 1.17805 1.02674 1.20765 0.94576 0.96140 0.95919 1.21001 0.93112 1.07427 1.00276 1.18151 0.94253 0.88057 0.89606 1.20172 0.91748 1.10711 1.27097 0.89404 1.26988 1.06190 0.92917 0.92196 1.69771 1.41134 1.05017 1.26042 0.85031 0.74875 0.79948 0.79164 1.17978 1.18507 1.18586 1.20872 0.93487 1.12088 1.00740 1.20516 0.93930 0.94652 0.95810 1.08531 0.75587 0.77735 0.80291 1.30073 1.15634 1.16382 1.16170 1.93539 1.30131 1.87701 1.86451 1.93535 1.79558 1.38110 1.86631 0.88694 0.86796 0.90967 0.88785 0.91499 0.74691 0.86543 0.86843 0.89087 0.87354 0.87574 0.82135 0.84276 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.94 71.98 0.64 -0.51 16 2 C -0.57 -8.39 2.87 30.59 0.09 -8.30 16 3 H 0.18 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.12 3.32 5.12 86.38 0.44 3.76 16 5 N -0.75 -26.82 5.11 -466.16 -2.38 -29.20 16 6 C 0.57 26.26 7.76 86.73 0.67 26.93 16 7 O -0.60 -29.97 16.32 -3.99 -0.07 -30.03 16 8 C -0.30 -15.11 5.89 -19.93 -0.12 -15.22 16 9 C -0.05 -2.70 9.47 22.25 0.21 -2.49 16 10 C -0.20 -10.55 8.63 22.47 0.19 -10.36 16 11 C 0.10 5.57 5.58 -21.28 -0.12 5.46 16 12 C -0.47 -24.45 9.04 23.46 0.21 -24.24 16 13 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 14 C 0.04 1.73 5.14 85.35 0.44 2.17 16 15 N -0.80 -39.04 10.95 21.87 0.24 -38.80 16 16 Si 0.99 35.52 29.60 68.60 2.03 37.55 16 17 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 18 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 19 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 20 C -0.25 -13.07 9.73 22.47 0.22 -12.85 16 21 C -0.03 -1.52 9.52 22.25 0.21 -1.31 16 22 S 2.39 45.97 4.76 -56.49 -0.27 45.70 16 23 C -0.63 -3.71 10.17 113.37 1.15 -2.55 16 24 O -0.98 -28.51 15.82 -127.37 -2.02 -30.52 16 25 O -0.98 -27.27 17.91 -127.37 -2.28 -29.55 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.11 -0.03 6.56 -2.39 -0.02 -0.04 16 28 H 0.07 0.75 8.06 -2.38 -0.02 0.73 16 29 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.41 14.02 4.30 -92.71 -0.40 13.62 16 32 H 0.12 5.07 6.37 -2.91 -0.02 5.05 16 33 H 0.11 6.08 6.16 -2.91 -0.02 6.06 16 34 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 35 H 0.11 5.20 8.06 -2.91 -0.02 5.17 16 36 H 0.11 5.16 7.63 -2.91 -0.02 5.14 16 37 H 0.16 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.16 -0.06 6.87 -2.39 -0.02 -0.07 16 Total: -1.00 -80.13 338.72 0.19 -79.94 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.68 Total: 34.42 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 4.25 Total: -39.52 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -2.14 Total: -67.99 kcal Atomic # 8 Polarization: -85.74 SS G_CDS: -4.36 Total: -90.10 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Atomic # 16 Polarization: 45.97 SS G_CDS: -0.27 Total: 45.70 kcal Total: -80.13 0.19 -79.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534723448.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.151 kcal (2) G-P(sol) polarization free energy of solvation -80.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds