Wall clock time and date at job start Tue Mar 31 2020 04:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00240 * 2 1 4 4 H 1.48496 * 109.47095 * 269.99931 * 3 2 1 5 5 H 1.48507 * 109.46823 * 29.99543 * 3 2 1 6 6 H 1.48499 * 109.47401 * 150.00046 * 3 2 1 7 7 C 1.38813 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99937 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.65232 * 180.02562 * 9 7 2 11 11 C 1.54320 * 107.27688 * 178.97334 * 10 9 7 12 12 H 1.09000 * 110.71863 * 96.34520 * 11 10 9 13 13 N 1.46494 * 110.72339 * 219.44221 * 11 10 9 14 14 C 1.34783 * 119.99947 * 271.15635 * 13 11 10 15 15 O 1.21578 * 120.00014 * 359.97438 * 14 13 11 16 16 C 1.47618 * 119.99764 * 179.97438 * 14 13 11 17 17 N 1.33056 * 120.53228 * 0.29096 * 16 14 13 18 18 N 1.28713 * 120.37002 * 180.28135 * 17 16 14 19 19 C 1.32949 * 121.55046 * 359.70127 * 18 17 16 20 20 O 1.35296 * 119.46922 * 179.97438 * 19 18 17 21 21 N 1.32468 * 121.06004 * 0.02562 * 19 18 17 22 22 C 1.32860 * 119.51338 * 0.02562 * 21 19 18 23 23 O 1.35295 * 120.71417 * 179.97438 * 22 21 19 24 24 C 1.55159 * 103.09973 * 337.89484 * 11 10 9 25 25 H 1.09001 * 111.00670 * 153.48569 * 24 11 10 26 26 O 1.42902 * 111.00259 * 277.33840 * 24 11 10 27 27 C 1.47430 * 125.64998 * 0.03666 * 9 7 2 28 28 H 0.97000 * 119.99948 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.88403 * 59.55107 * 10 9 7 30 30 H 1.09007 * 109.87887 * 298.39242 * 10 9 7 31 31 H 0.97002 * 120.00046 * 91.14975 * 13 11 10 32 32 H 0.96692 * 113.99908 * 270.02549 * 20 19 18 33 33 H 0.96705 * 113.99646 * 90.00244 * 23 22 21 34 34 H 0.96701 * 113.99528 * 179.97438 * 26 24 11 35 35 H 1.09003 * 110.36336 * 322.93386 * 27 9 7 36 36 H 1.08999 * 110.36378 * 85.14348 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.9317 -3.7275 0.0016 11 6 0.7783 -4.7524 0.0276 12 1 0.5492 -5.1007 -0.9796 13 7 1.1073 -5.8809 0.9019 14 6 1.7578 -6.9514 0.4046 15 8 2.0713 -6.9808 -0.7698 16 6 2.0898 -8.0883 1.2858 17 7 1.7467 -8.0698 2.5712 18 7 2.0424 -9.0604 3.3380 19 6 2.6883 -10.1276 2.8779 20 8 2.9783 -11.1449 3.7214 21 7 3.0532 -10.2104 1.6072 22 6 2.7702 -9.2112 0.7785 23 8 3.1319 -9.2701 -0.5239 24 6 -0.4056 -3.9349 0.6083 25 1 -1.3609 -4.3371 0.2710 26 8 -0.3462 -3.8906 2.0354 27 6 -0.1416 -2.5332 -0.0008 28 1 -0.4850 0.8400 -0.0004 29 1 2.5571 -3.8507 0.8858 30 1 2.5293 -3.8646 -0.8997 31 1 0.8569 -5.8576 1.8388 32 1 3.8342 -11.0578 4.1629 33 1 2.4653 -9.6693 -1.0996 34 1 -1.0658 -3.3899 2.4436 35 1 -0.5999 -1.7587 0.6143 36 1 -0.5266 -2.4850 -1.0194 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083606708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:17 Heat of formation + Delta-G solvation = -33.530693 kcal Electronic energy + Delta-G solvation = -25689.057849 eV Core-core repulsion = 21598.228958 eV Total energy + Delta-G solvation = -4090.828891 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.111 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.48613 -39.87896 -38.75228 -38.09077 -37.77660 -34.79782 -34.75639 -34.11931 -32.44775 -31.50161 -28.61846 -27.26860 -26.39792 -25.41242 -24.41652 -21.75530 -20.59764 -20.44401 -20.16531 -19.68052 -18.91240 -18.20144 -17.16030 -16.84268 -16.63952 -16.16702 -15.49264 -14.97851 -14.92897 -14.53335 -14.24130 -14.01477 -13.45950 -13.29004 -13.03374 -12.94339 -12.77436 -12.58081 -12.07503 -11.91927 -11.83633 -11.38253 -11.12801 -10.89182 -10.68769 -10.44284 -10.39236 -10.22716 -10.03588 -9.86167 -9.84141 -9.26957 -8.87811 -8.70346 -6.87680 -5.71405 -3.11309 -0.41903 -0.12841 2.03885 2.23005 2.58039 2.79205 3.07441 3.37408 3.39146 3.44274 3.46137 4.00126 4.22792 4.44008 4.50556 4.67158 4.99050 5.26921 5.31966 5.46627 5.65565 5.85384 5.95165 5.99060 6.21096 6.36128 6.62913 6.63989 6.77690 6.83819 7.22076 7.46751 7.55395 7.70628 7.73777 8.02356 8.18629 8.29504 9.16088 9.76923 10.39580 11.33779 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.026108 B = 0.003068 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.217496 B = 9123.320759 C = 9312.819795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.131 3.869 11 C 0.140 3.860 12 H 0.106 0.894 13 N -0.680 5.680 14 C 0.573 3.427 15 O -0.513 6.513 16 C -0.046 4.046 17 N -0.108 5.108 18 N -0.281 5.281 19 C 0.478 3.522 20 O -0.447 6.447 21 N -0.510 5.510 22 C 0.421 3.579 23 O -0.440 6.440 24 C 0.068 3.932 25 H 0.061 0.939 26 O -0.560 6.560 27 C 0.127 3.873 28 H 0.252 0.748 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.419 0.581 32 H 0.422 0.578 33 H 0.422 0.578 34 H 0.381 0.619 35 H 0.117 0.883 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 -19.495 4.359 19.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.004 3.996 11 C 0.035 3.965 12 H 0.124 0.876 13 N -0.331 5.331 14 C 0.354 3.646 15 O -0.387 6.387 16 C -0.199 4.199 17 N 0.033 4.967 18 N -0.144 5.144 19 C 0.173 3.827 20 O -0.250 6.250 21 N -0.254 5.254 22 C 0.223 3.777 23 O -0.247 6.247 24 C 0.007 3.993 25 H 0.079 0.921 26 O -0.366 6.366 27 C 0.001 3.999 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.257 0.743 32 H 0.284 0.716 33 H 0.286 0.714 34 H 0.229 0.771 35 H 0.134 0.866 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.194 -19.717 4.408 20.239 hybrid contribution 0.328 0.830 -0.355 0.960 sum 1.522 -18.887 4.053 19.377 Atomic orbital electron populations 1.69707 1.04903 1.24852 1.58118 1.24754 0.95771 0.97704 1.02437 0.86029 0.78544 0.83113 0.77567 1.21626 1.21647 1.20688 1.19095 0.90597 0.82229 1.42601 0.90375 1.44267 1.01417 0.99621 1.86914 1.21596 0.93682 0.85566 0.98771 1.22323 0.95769 0.84552 0.93819 0.87639 1.45741 1.55884 1.16296 1.15212 1.17071 0.79661 0.81516 0.86363 1.90873 1.52875 1.79890 1.15094 1.24191 1.00762 0.99333 0.95597 1.74053 1.07499 1.14733 1.00439 1.73892 1.14430 0.97559 1.28479 1.21902 0.89624 0.86109 0.85101 1.84688 1.43482 1.39443 1.57403 1.68185 1.21624 1.30221 1.05351 1.19909 0.83765 0.86365 0.87672 1.84697 1.45898 1.82771 1.11357 1.23628 0.95373 0.98568 0.81730 0.92099 1.86256 1.54643 1.76945 1.18737 1.22653 0.85905 0.92339 0.98990 0.93695 0.95129 0.95120 0.74310 0.71599 0.71381 0.77122 0.86592 0.95881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.05 10.09 55.49 0.56 -25.49 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.22 -6.01 10.27 -15.06 -0.15 -6.16 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.60 -15.01 3.40 -169.94 -0.58 -15.59 16 10 C 0.13 2.82 7.00 -3.06 -0.02 2.80 16 11 C 0.14 2.46 3.15 -66.10 -0.21 2.26 16 12 H 0.11 1.81 7.62 -51.93 -0.40 1.42 16 13 N -0.68 -10.42 5.07 -53.05 -0.27 -10.69 16 14 C 0.57 8.46 7.80 -12.43 -0.10 8.36 16 15 O -0.51 -8.50 14.95 -16.07 -0.24 -8.74 16 16 C -0.05 -0.58 6.85 -82.56 -0.57 -1.15 16 17 N -0.11 -1.39 10.88 33.45 0.36 -1.03 16 18 N -0.28 -3.37 11.60 29.21 0.34 -3.03 16 19 C 0.48 4.99 8.81 -90.57 -0.80 4.19 16 20 O -0.45 -3.37 13.63 -17.58 -0.24 -3.61 16 21 N -0.51 -5.65 10.57 -14.32 -0.15 -5.80 16 22 C 0.42 4.80 7.85 -16.16 -0.13 4.68 16 23 O -0.44 -4.51 11.76 -38.95 -0.46 -4.97 16 24 C 0.07 1.18 4.31 -24.48 -0.11 1.07 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 O -0.56 -9.30 12.23 -35.23 -0.43 -9.73 16 27 C 0.13 2.87 5.62 -2.42 -0.01 2.86 16 28 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 29 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 30 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.42 6.24 6.94 -40.82 -0.28 5.95 16 32 H 0.42 0.83 9.06 45.56 0.41 1.24 16 33 H 0.42 2.25 9.06 45.56 0.41 2.66 16 34 H 0.38 5.05 9.12 45.56 0.42 5.46 16 35 H 0.12 2.92 5.87 -51.93 -0.30 2.62 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -34.52 318.47 -4.49 -39.01 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -0.97 Total: 9.52 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: -2.19 Total: 18.48 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.26 Total: -61.63 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -1.37 Total: -27.04 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.52 -4.49 -39.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083606708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.480 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds