Wall clock time and date at job start Tue Mar 31 2020 04:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99957 * 2 1 4 4 H 1.09000 * 109.47031 * 30.00205 * 3 2 1 5 5 C 1.50696 * 109.47537 * 270.00324 * 3 2 1 6 6 O 1.21283 * 119.99641 * 354.99619 * 5 3 2 7 7 N 1.34776 * 120.00459 * 174.72903 * 5 3 2 8 8 C 1.39236 * 120.00300 * 175.17211 * 7 5 3 9 9 C 1.39482 * 119.83128 * 325.34737 * 8 7 5 10 10 C 1.36380 * 120.16530 * 179.71752 * 9 8 7 11 11 C 1.40864 * 119.82959 * 0.57256 * 10 9 8 12 12 C 1.41154 * 120.16616 * 179.67482 * 11 10 9 13 13 H 1.07994 * 120.00144 * 205.36103 * 12 11 10 14 14 C 1.39907 * 119.99691 * 25.36731 * 12 11 10 15 15 N 1.30875 * 120.00124 * 16.81269 * 14 12 11 16 16 Si 1.86798 * 119.99799 * 196.82083 * 14 12 11 17 17 H 1.48494 * 109.47228 * 59.99411 * 16 14 12 18 18 H 1.48505 * 109.47027 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47203 * 299.99516 * 16 14 12 20 20 C 1.40874 * 119.67276 * 359.70217 * 11 10 9 21 21 C 1.36380 * 119.82792 * 359.97438 * 20 11 10 22 22 C 1.50700 * 109.47376 * 149.99989 * 3 2 1 23 23 C 1.38239 * 119.99395 * 39.72550 * 22 3 2 24 24 C 1.38243 * 119.99668 * 179.78546 * 23 22 3 25 25 C 1.38232 * 119.99822 * 0.45089 * 24 23 22 26 26 C 1.38239 * 120.00404 * 359.80490 * 25 24 23 27 27 C 1.38235 * 120.00402 * 220.00154 * 22 3 2 28 28 H 1.08993 * 109.46713 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46563 * 300.00007 * 1 2 3 30 30 H 1.08998 * 109.47108 * 59.99682 * 1 2 3 31 31 H 0.96998 * 120.00092 * 355.16552 * 7 5 3 32 32 H 1.07997 * 119.91727 * 0.02562 * 9 8 7 33 33 H 1.08000 * 120.08541 * 180.25457 * 10 9 8 34 34 H 0.96995 * 119.99634 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.08833 * 179.97438 * 20 11 10 36 36 H 1.07996 * 119.91497 * 179.97438 * 21 20 11 37 37 H 1.07993 * 120.00600 * 0.02562 * 23 22 3 38 38 H 1.08001 * 120.00181 * 180.27634 * 24 23 22 39 39 H 1.08005 * 119.99978 * 179.82973 * 25 24 23 40 40 H 1.07993 * 120.00089 * 180.02562 * 26 25 24 41 41 H 1.07997 * 119.99730 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7645 -1.4207 6 8 1.9792 1.0107 -2.3413 7 7 2.6536 3.0143 -1.6687 8 6 2.9384 3.4061 -2.9741 9 6 3.4730 2.4844 -3.8742 10 6 3.7491 2.8593 -5.1560 11 6 3.5043 4.1843 -5.5667 12 6 3.7939 4.5818 -6.8898 13 1 4.0045 5.6181 -7.1085 14 6 3.8079 3.6330 -7.9180 15 7 3.2448 2.4653 -7.7386 16 14 4.6306 4.0329 -9.5467 17 1 6.0664 4.3328 -9.3155 18 1 4.5093 2.8693 -10.4614 19 1 3.9703 5.2144 -10.1578 20 6 2.9696 5.1110 -4.6503 21 6 2.6924 4.7197 -3.3736 22 6 3.3387 1.2639 0.7104 23 6 4.1871 0.1881 0.5270 24 6 5.4076 0.1521 1.1752 25 6 5.7756 1.1874 2.0139 26 6 4.9248 2.2607 2.2014 27 6 3.7063 2.2989 1.5498 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 2.7712 3.6410 -0.9377 32 1 3.6641 1.4700 -3.5566 33 1 4.1592 2.1435 -5.8530 34 1 3.2548 1.8075 -8.4513 35 1 2.7797 6.1287 -4.9579 36 1 2.2829 5.4290 -2.6697 37 1 3.8982 -0.6224 -0.1256 38 1 6.0725 -0.6863 1.0285 39 1 6.7279 1.1580 2.5225 40 1 5.2125 3.0698 2.8564 41 1 3.0416 3.1374 1.6962 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000331333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:54 Heat of formation + Delta-G solvation = -29.430925 kcal Electronic energy + Delta-G solvation = -24782.774789 eV Core-core repulsion = 21206.513283 eV Total energy + Delta-G solvation = -3576.261505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32157 -38.88343 -37.74726 -36.73603 -34.41876 -33.08416 -32.11355 -30.98232 -29.52038 -29.07564 -27.60111 -26.15573 -24.59505 -22.64595 -22.12941 -21.38754 -20.86302 -19.51342 -17.49159 -17.31311 -17.18467 -16.79964 -15.92517 -15.76111 -15.20461 -14.61281 -14.57533 -14.49706 -14.18980 -13.89597 -13.47639 -13.25121 -13.06116 -12.70662 -12.68158 -12.34398 -12.03018 -11.84032 -11.54447 -11.48781 -11.20479 -11.11017 -11.04282 -10.92322 -10.53041 -10.44050 -9.93151 -9.75750 -9.41923 -9.21200 -8.99076 -8.76378 -8.54773 -7.51629 -6.99741 -6.72145 -4.28494 1.17086 1.33545 2.55234 2.99147 3.07874 3.10407 3.11464 3.35331 3.40450 3.60358 3.94195 4.08229 4.57752 4.65364 4.76592 4.89808 4.97673 5.05495 5.10000 5.28887 5.37649 5.47125 5.52394 5.68529 5.71769 5.81489 5.96272 6.14691 6.32751 6.38813 6.42809 6.43654 6.79776 6.87780 6.91855 7.03814 7.05373 7.17278 7.29826 7.60069 7.68790 7.97306 8.05902 8.21308 8.32319 8.63390 8.77258 8.89327 9.01435 10.20663 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.003283 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.247132 B = 8527.973057 C = 8940.240822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.117 3.883 4 H 0.089 0.911 5 C 0.479 3.521 6 O -0.509 6.509 7 N -0.646 5.646 8 C -0.006 4.006 9 C -0.084 4.084 10 C -0.155 4.155 11 C 0.107 3.893 12 C -0.460 4.460 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.789 5.789 16 Si 0.909 3.091 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.216 4.216 21 C -0.104 4.104 22 C -0.085 4.085 23 C -0.083 4.083 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.121 4.121 27 C -0.109 4.109 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.392 0.608 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.282 0.718 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 -1.866 17.838 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.055 3.945 4 H 0.107 0.893 5 C 0.264 3.736 6 O -0.384 6.384 7 N -0.290 5.290 8 C -0.098 4.098 9 C -0.104 4.104 10 C -0.175 4.175 11 C 0.104 3.896 12 C -0.489 4.489 13 H 0.096 0.904 14 C -0.144 4.144 15 N -0.413 5.413 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.236 4.236 21 C -0.124 4.124 22 C -0.085 4.085 23 C -0.101 4.101 24 C -0.139 4.139 25 C -0.134 4.134 26 C -0.139 4.139 27 C -0.127 4.127 28 H 0.108 0.892 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.225 0.775 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.244 -2.860 17.055 17.295 hybrid contribution 0.066 0.663 -0.449 0.804 sum 0.310 -2.197 16.606 16.754 Atomic orbital electron populations 1.22869 0.80412 1.03251 1.00132 1.87967 1.20163 1.24425 1.94514 1.20746 0.93561 0.87207 0.92944 0.89332 1.20958 0.78668 0.82942 0.91043 1.90740 1.48940 1.53592 1.45143 1.42949 1.64769 1.12951 1.08349 1.17153 1.13307 0.94816 0.84487 1.20402 0.98497 0.97437 0.94035 1.20984 1.04739 0.97667 0.94072 1.17656 0.87907 0.91423 0.92600 1.19519 1.41937 0.95565 0.91926 0.90411 1.25939 0.93111 0.94388 1.00961 1.69851 1.31301 1.05865 1.34331 0.86359 0.80761 0.78896 0.80648 1.18815 1.20322 1.19021 1.20545 1.09508 0.99484 0.94043 1.20037 1.02239 0.93857 0.96251 1.19406 0.94642 0.96237 0.98263 1.21074 0.93135 0.97746 0.98126 1.21192 0.96483 0.99008 0.97240 1.21199 0.99493 0.94236 0.98437 1.21054 0.94173 0.98537 1.00145 1.20934 0.97331 0.97907 0.96509 0.89158 0.94076 0.93283 0.77483 0.88243 0.86225 0.90710 0.88640 0.89256 0.85258 0.85845 0.86045 0.85793 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.81 101.05 1.09 1.44 16 2 O -0.35 -5.28 9.20 -55.09 -0.51 -5.78 16 3 C 0.12 1.65 2.72 -29.04 -0.08 1.57 16 4 H 0.09 0.97 7.65 -51.93 -0.40 0.57 16 5 C 0.48 8.90 6.83 -10.99 -0.08 8.82 16 6 O -0.51 -11.88 14.24 -14.31 -0.20 -12.08 16 7 N -0.65 -11.73 5.26 -9.74 -0.05 -11.78 16 8 C -0.01 -0.13 6.27 -83.57 -0.52 -0.65 16 9 C -0.08 -2.14 8.57 -39.79 -0.34 -2.48 16 10 C -0.15 -4.22 8.63 -39.26 -0.34 -4.56 16 11 C 0.11 2.89 5.57 -106.80 -0.59 2.30 16 12 C -0.46 -12.31 9.04 -37.85 -0.34 -12.65 16 13 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 14 C 0.07 1.90 5.15 -17.33 -0.09 1.81 16 15 N -0.79 -21.04 10.94 55.55 0.61 -20.43 16 16 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 17 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 C -0.22 -5.28 9.74 -39.25 -0.38 -5.66 16 21 C -0.10 -2.30 9.90 -39.79 -0.39 -2.69 16 22 C -0.08 -1.11 4.93 -104.62 -0.52 -1.63 16 23 C -0.08 -1.12 9.35 -39.58 -0.37 -1.49 16 24 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 27 C -0.11 -1.15 9.67 -39.58 -0.38 -1.54 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.39 5.59 8.82 -40.82 -0.36 5.23 16 32 H 0.10 2.58 6.48 -52.49 -0.34 2.24 16 33 H 0.12 3.38 6.18 -52.49 -0.32 3.06 16 34 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 35 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 36 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.13 1.88 7.77 -52.49 -0.41 1.48 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 0.99 8.04 -52.49 -0.42 0.56 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -32.34 353.66 -9.56 -41.90 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.18 Total: 11.35 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -4.53 Total: -22.34 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.56 Total: -32.22 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.71 Total: -17.86 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.34 -9.56 -41.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000331333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.472 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds