Wall clock time and date at job start Tue Mar 31 2020 04:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 113.99704 * 2 1 4 4 H 1.08999 * 109.47255 * 29.99391 * 3 2 1 5 5 C 1.50702 * 109.47416 * 150.00057 * 3 2 1 6 6 O 1.21281 * 119.99401 * 4.99592 * 5 3 2 7 7 N 1.34776 * 120.00327 * 185.00103 * 5 3 2 8 8 C 1.39237 * 119.99630 * 175.70910 * 7 5 3 9 9 C 1.39479 * 119.82713 * 215.00469 * 8 7 5 10 10 C 1.36382 * 120.16785 * 179.76601 * 9 8 7 11 11 C 1.40866 * 119.82304 * 0.50936 * 10 9 8 12 12 C 1.41158 * 120.16500 * 179.72269 * 11 10 9 13 13 H 1.07998 * 120.00503 * 214.80776 * 12 11 10 14 14 C 1.39908 * 119.99624 * 34.80631 * 12 11 10 15 15 N 1.30873 * 120.00170 * 355.55285 * 14 12 11 16 16 Si 1.86798 * 120.00032 * 175.55143 * 14 12 11 17 17 H 1.48497 * 109.47328 * 89.99852 * 16 14 12 18 18 H 1.48496 * 109.47316 * 210.00179 * 16 14 12 19 19 H 1.48505 * 109.46922 * 329.99982 * 16 14 12 20 20 C 1.40871 * 119.67487 * 359.74347 * 11 10 9 21 21 C 1.36374 * 119.82692 * 0.02562 * 20 11 10 22 22 C 1.50703 * 109.47160 * 269.99906 * 3 2 1 23 23 C 1.38233 * 120.00079 * 324.72879 * 22 3 2 24 24 C 1.38229 * 120.00305 * 179.81019 * 23 22 3 25 25 C 1.38230 * 120.00022 * 0.39829 * 24 23 22 26 26 C 1.38235 * 119.99866 * 359.85291 * 25 24 23 27 27 C 1.38232 * 120.00274 * 144.99818 * 22 3 2 28 28 H 1.08996 * 109.47336 * 300.00257 * 1 2 3 29 29 H 1.09002 * 109.46864 * 60.00521 * 1 2 3 30 30 H 1.09000 * 109.46663 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99520 * 355.71024 * 7 5 3 32 32 H 1.08003 * 119.91815 * 0.02562 * 9 8 7 33 33 H 1.07995 * 120.08797 * 180.25561 * 10 9 8 34 34 H 0.96996 * 120.00126 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.08376 * 179.97438 * 20 11 10 36 36 H 1.08004 * 119.91119 * 179.97438 * 21 20 11 37 37 H 1.08011 * 119.99908 * 359.97438 * 23 22 3 38 38 H 1.08001 * 120.00161 * 180.22722 * 24 23 22 39 39 H 1.08001 * 120.00434 * 179.83471 * 25 24 23 40 40 H 1.08001 * 119.99997 * 179.97438 * 26 25 24 41 41 H 1.08000 * 120.00127 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 3.3386 1.2640 0.7104 6 8 3.7897 0.2046 1.0914 7 7 4.0254 2.4042 0.9224 8 6 5.2083 2.3781 1.6564 9 6 5.5350 3.4521 2.4841 10 6 6.6895 3.4317 3.2098 11 6 7.5581 2.3269 3.1134 12 6 8.7578 2.3009 3.8568 13 1 9.6410 1.8390 3.4408 14 6 8.8028 2.8735 5.1325 15 7 7.7594 3.5093 5.6016 16 14 10.3520 2.7305 6.1664 17 1 11.2416 3.8864 5.8877 18 1 9.9874 2.7223 7.6059 19 1 11.0585 1.4691 5.8275 20 6 7.2239 1.2483 2.2711 21 6 6.0636 1.2810 1.5553 22 6 2.2145 1.7644 -1.4208 23 6 2.5650 0.8519 -2.3983 24 6 2.7486 1.2721 -3.7023 25 6 2.5898 2.6062 -4.0274 26 6 2.2444 3.5196 -3.0489 27 6 2.0569 3.0987 -1.7457 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.6955 3.2428 0.5636 32 1 4.8699 4.3002 2.5539 33 1 6.9392 4.2621 3.8535 34 1 7.7905 3.9060 6.4861 35 1 7.8852 0.3982 2.1919 36 1 5.8061 0.4550 0.9088 37 1 2.6928 -0.1899 -2.1436 38 1 3.0189 0.5586 -4.4666 39 1 2.7358 2.9351 -5.0457 40 1 2.1206 4.5621 -3.3028 41 1 1.7869 3.8123 -0.9813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000331335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:56 Heat of formation + Delta-G solvation = -26.966092 kcal Electronic energy + Delta-G solvation = -24636.618626 eV Core-core repulsion = 21060.464004 eV Total energy + Delta-G solvation = -3576.154622 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37976 -38.96187 -37.73907 -36.87039 -34.41423 -33.05630 -32.04256 -31.03234 -29.57155 -29.03332 -27.82746 -26.07540 -24.62214 -22.70651 -22.18949 -21.45028 -20.72561 -19.63135 -17.52620 -17.31393 -17.18954 -16.85709 -15.96194 -15.76975 -15.13534 -14.74650 -14.65756 -14.56629 -14.32575 -13.87335 -13.52768 -13.27262 -13.09178 -12.77380 -12.66834 -12.39546 -12.09676 -11.72363 -11.62553 -11.41091 -11.35600 -11.14562 -11.11926 -10.95437 -10.71019 -10.15154 -9.93043 -9.49392 -9.44992 -9.24540 -9.06196 -8.90383 -8.68712 -7.53277 -6.85310 -6.60707 -4.33064 1.10724 1.26396 2.53401 3.01068 3.09725 3.11048 3.11645 3.15237 3.35452 3.58775 3.99093 4.21488 4.46951 4.70048 4.72377 4.84338 4.93877 4.98348 5.06136 5.22973 5.24444 5.33963 5.45574 5.52682 5.66910 5.75918 5.89184 6.19586 6.26848 6.35192 6.37448 6.46318 6.74988 6.82300 6.84426 7.00033 7.08388 7.21508 7.31337 7.65210 7.74984 7.88708 8.07682 8.25705 8.32966 8.63248 8.74202 8.94060 9.01126 10.30377 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.022916 B = 0.002976 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.539132 B = 9404.785071 C = 9819.850972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.116 3.884 4 H 0.092 0.908 5 C 0.505 3.495 6 O -0.506 6.506 7 N -0.645 5.645 8 C 0.005 3.995 9 C -0.120 4.120 10 C -0.141 4.141 11 C 0.100 3.900 12 C -0.461 4.461 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.812 5.812 16 Si 0.915 3.085 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.205 4.205 21 C -0.085 4.085 22 C -0.113 4.113 23 C -0.086 4.086 24 C -0.122 4.122 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.111 4.111 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.394 0.606 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.277 0.723 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.720 1.608 -13.676 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C 0.054 3.946 4 H 0.109 0.891 5 C 0.290 3.710 6 O -0.380 6.380 7 N -0.290 5.290 8 C -0.087 4.087 9 C -0.140 4.140 10 C -0.161 4.161 11 C 0.098 3.902 12 C -0.492 4.492 13 H 0.094 0.906 14 C -0.145 4.145 15 N -0.439 5.439 16 Si 0.740 3.260 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.225 4.225 21 C -0.105 4.105 22 C -0.114 4.114 23 C -0.104 4.104 24 C -0.140 4.140 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.129 4.129 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.228 0.772 32 H 0.109 0.891 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.387 0.765 -13.169 18.794 hybrid contribution 0.136 0.627 0.406 0.759 sum -13.251 1.392 -12.763 18.450 Atomic orbital electron populations 1.22888 0.80749 1.03171 1.00040 1.88054 1.19559 1.24487 1.94632 1.20768 0.94654 0.86905 0.92291 0.89056 1.20010 0.85493 0.84912 0.80589 1.90710 1.68251 1.29530 1.49555 1.42834 1.23479 1.09345 1.53311 1.17243 0.88274 1.00108 1.03072 1.20304 0.98769 0.97091 0.97864 1.21186 0.94975 0.99645 1.00298 1.17725 0.93096 0.89507 0.89884 1.19504 0.97343 1.32589 0.99728 0.90605 1.25877 0.97315 0.92842 0.98500 1.69759 1.29130 1.27361 1.17682 0.86195 0.81451 0.79645 0.78675 1.19541 1.20318 1.18717 1.20814 0.97844 0.98924 1.04875 1.20405 0.93461 0.96917 0.99682 1.20121 1.02097 0.94237 0.94951 1.21061 0.96692 1.00277 0.92366 1.21189 1.00255 0.96094 0.96418 1.21206 0.99295 0.93482 0.99429 1.21090 1.00147 0.99658 0.92930 1.21004 1.00281 0.94678 0.96967 0.93750 0.93904 0.89121 0.77235 0.89084 0.84998 0.91166 0.88554 0.87482 0.85209 0.85892 0.86057 0.85799 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.81 101.05 1.09 1.37 16 2 O -0.35 -5.07 9.04 -55.09 -0.50 -5.57 16 3 C 0.12 1.59 2.73 -29.03 -0.08 1.51 16 4 H 0.09 1.00 7.70 -51.93 -0.40 0.60 16 5 C 0.51 9.35 7.00 -10.98 -0.08 9.27 16 6 O -0.51 -11.68 13.93 -14.31 -0.20 -11.88 16 7 N -0.65 -11.69 5.26 -9.74 -0.05 -11.74 16 8 C 0.01 0.11 6.30 -83.58 -0.53 -0.41 16 9 C -0.12 -2.75 9.90 -39.79 -0.39 -3.15 16 10 C -0.14 -3.64 8.62 -39.26 -0.34 -3.98 16 11 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 12 C -0.46 -12.41 9.03 -37.85 -0.34 -12.75 16 13 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 14 C 0.07 1.77 5.42 -17.33 -0.09 1.68 16 15 N -0.81 -21.21 10.60 55.55 0.59 -20.62 16 16 Si 0.92 19.14 29.56 -169.99 -5.03 14.11 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 20 C -0.20 -5.28 9.74 -39.26 -0.38 -5.67 16 21 C -0.08 -2.09 8.61 -39.79 -0.34 -2.43 16 22 C -0.11 -1.39 4.88 -104.62 -0.51 -1.90 16 23 C -0.09 -1.08 9.35 -39.59 -0.37 -1.45 16 24 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 25 C -0.12 -1.10 10.05 -39.59 -0.40 -1.49 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.11 -1.13 9.40 -39.59 -0.37 -1.50 16 28 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.39 5.66 8.50 -40.82 -0.35 5.31 16 32 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 33 H 0.13 3.51 6.13 -52.49 -0.32 3.18 16 34 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 35 H 0.10 2.37 8.06 -52.49 -0.42 1.94 16 36 H 0.11 2.64 6.22 -52.48 -0.33 2.31 16 37 H 0.13 1.72 7.64 -52.48 -0.40 1.32 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -32.09 352.24 -9.54 -41.64 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.14 Total: 10.72 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -4.52 Total: -21.97 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.54 Total: -32.36 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.70 Total: -17.44 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.09 -9.54 -41.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000331335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.673 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds