Wall clock time and date at job start Tue Mar 31 2020 04:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39628 * 120.49238 * 81.76159 * 3 2 1 5 5 N 1.31759 * 120.88561 * 179.97438 * 4 3 2 6 6 C 1.31736 * 122.03587 * 359.72701 * 5 4 3 7 7 C 1.39598 * 120.87684 * 0.53943 * 6 5 4 8 8 C 1.47856 * 120.48939 * 179.75023 * 7 6 5 9 9 O 1.21551 * 120.00084 * 315.93656 * 8 7 6 10 10 N 1.34777 * 120.00070 * 135.93947 * 8 7 6 11 11 C 1.47163 * 120.70971 * 184.20463 * 10 8 7 12 12 C 1.53887 * 108.03258 * 132.75114 * 11 10 8 13 13 H 1.09000 * 112.58217 * 182.22271 * 12 11 10 14 14 C 1.54132 * 107.70701 * 306.32322 * 12 11 10 15 15 C 1.54279 * 104.89230 * 89.40876 * 14 12 11 16 16 C 1.54549 * 104.84756 * 359.81116 * 15 14 12 17 17 H 1.09002 * 112.18552 * 146.40914 * 16 15 14 18 18 C 1.49243 * 120.76844 * 4.28212 * 10 8 7 19 19 N 1.48307 * 107.21028 * 58.35618 * 12 11 10 20 20 C 1.36934 * 128.07398 * 106.70165 * 19 12 11 21 21 H 1.07996 * 120.00047 * 164.70845 * 20 19 12 22 22 C 1.38817 * 120.00431 * 344.71627 * 20 19 12 23 23 N 1.31623 * 119.99272 * 350.15914 * 22 20 19 24 24 Si 1.86796 * 120.00233 * 170.16011 * 22 20 19 25 25 H 1.48497 * 109.46773 * 269.99628 * 24 22 20 26 26 H 1.48496 * 109.47350 * 29.99961 * 24 22 20 27 27 H 1.48499 * 109.47029 * 150.00036 * 24 22 20 28 28 C 1.39673 * 120.48693 * 261.74410 * 3 2 1 29 29 H 4.52728 * 13.92795 * 0.02562 * 4 2 1 30 30 H 1.08004 * 119.56094 * 359.96096 * 4 3 2 31 31 H 1.07998 * 119.55871 * 180.26988 * 6 5 4 32 32 H 1.08997 * 109.75141 * 13.11399 * 11 10 8 33 33 H 1.09002 * 109.74857 * 252.37720 * 11 10 8 34 34 H 1.09000 * 110.50646 * 330.47467 * 14 12 11 35 35 H 1.09002 * 110.27658 * 208.23124 * 14 12 11 36 36 H 1.09000 * 110.36962 * 240.96652 * 15 14 12 37 37 H 1.09003 * 110.36538 * 118.64869 * 15 14 12 38 38 H 1.09002 * 110.51835 * 107.82588 * 18 10 8 39 39 H 1.09004 * 109.74952 * 346.60025 * 18 10 8 40 40 H 0.97000 * 119.99529 * 180.02562 * 23 22 20 41 41 H 1.08008 * 120.92472 * 0.03421 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3146 -0.1714 -1.1908 5 7 4.6322 -0.1717 -1.1998 6 6 5.3386 -0.0062 -0.1002 7 6 4.7114 0.1669 1.1349 8 6 5.5127 0.3464 2.3645 9 8 6.4813 -0.3594 2.5671 10 7 5.1690 1.2926 3.2607 11 6 6.0066 1.5469 4.4437 12 6 6.2089 3.0675 4.5661 13 1 6.8550 3.3379 5.4014 14 6 6.7583 3.5773 3.2193 15 6 5.5067 3.9183 2.3841 16 6 4.3121 3.5777 3.3037 17 1 3.4677 4.2490 3.1471 18 6 3.9302 2.1043 3.0769 19 7 4.8636 3.6817 4.6765 20 6 4.2711 4.2235 5.7858 21 1 3.3995 4.8523 5.6797 22 6 4.7908 3.9648 7.0467 23 7 5.7263 3.0513 7.1980 24 14 4.1626 4.9128 8.5285 25 1 4.9805 6.1380 8.7153 26 1 2.7442 5.2933 8.3078 27 1 4.2636 4.0606 9.7405 28 6 3.3146 0.1738 1.1912 29 1 -1.0499 0.0005 -0.0003 30 1 2.7756 -0.3064 -2.1168 31 1 6.4172 -0.0089 -0.1544 32 1 6.9721 1.0553 4.3240 33 1 5.5081 1.1687 5.3362 34 1 7.3428 2.8003 2.7266 35 1 7.3665 4.4688 3.3725 36 1 5.4757 3.3090 1.4808 37 1 5.4984 4.9778 2.1284 38 1 3.1679 1.8064 3.7968 39 1 3.5514 1.9739 2.0631 40 1 6.0893 2.8702 8.0791 41 1 2.7977 0.3092 2.1298 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029466521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:29 Heat of formation + Delta-G solvation = 105.810775 kcal Electronic energy + Delta-G solvation = -26057.414922 eV Core-core repulsion = 22519.310688 eV Total energy + Delta-G solvation = -3538.104234 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85282 -39.51153 -37.75889 -34.59117 -33.94046 -32.65378 -32.23281 -30.73950 -30.49059 -29.31647 -26.58148 -24.78064 -24.43431 -23.66607 -23.36329 -20.72891 -19.75652 -19.19479 -18.43313 -17.24988 -17.13556 -16.65895 -16.23783 -15.47387 -15.32830 -14.79036 -14.65483 -14.22156 -13.82212 -13.66344 -13.31046 -13.18357 -13.11261 -12.74857 -12.47420 -11.94336 -11.82034 -11.75610 -11.65985 -11.14612 -11.03272 -10.92056 -10.88944 -10.42753 -10.13193 -10.05380 -9.92408 -9.89640 -9.67324 -9.62305 -9.27228 -8.97877 -8.83639 -8.18262 -6.92387 -5.90733 -3.26408 0.45343 0.81066 2.44216 2.67467 3.07969 3.31766 3.36373 3.39076 3.39588 3.76814 3.92180 4.25925 4.35774 4.55839 4.61031 4.68905 5.06456 5.12457 5.25150 5.26752 5.50776 5.59377 5.66889 5.67916 5.73652 5.80776 5.82419 5.86907 6.10659 6.23696 6.27988 6.36017 6.46271 6.54936 6.61557 6.72472 6.77607 6.86620 7.21939 7.22817 7.42278 7.62485 7.65541 7.88776 8.06574 8.49171 8.98741 9.61006 10.36871 11.22351 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.017980 B = 0.004323 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.932550 B = 6475.290168 C = 7209.947731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.150 4.150 3 C -0.048 4.048 4 C 0.136 3.864 5 N -0.482 5.482 6 C 0.155 3.845 7 C -0.163 4.163 8 C 0.552 3.448 9 O -0.547 6.547 10 N -0.582 5.582 11 C 0.112 3.888 12 C 0.168 3.832 13 H 0.119 0.881 14 C -0.137 4.137 15 C -0.122 4.122 16 C 0.133 3.867 17 H 0.078 0.922 18 C 0.085 3.915 19 N -0.583 5.583 20 C -0.230 4.230 21 H 0.077 0.923 22 C -0.001 4.001 23 N -0.912 5.912 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.281 1.281 27 H -0.291 1.291 28 C -0.024 4.024 29 H 0.227 0.773 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.256 0.744 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 -3.525 -13.716 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C -0.050 4.050 4 C -0.022 4.022 5 N -0.190 5.190 6 C -0.002 4.002 7 C -0.168 4.168 8 C 0.338 3.662 9 O -0.427 6.427 10 N -0.313 5.313 11 C -0.010 4.010 12 C 0.061 3.939 13 H 0.137 0.863 14 C -0.176 4.176 15 C -0.161 4.161 16 C 0.025 3.975 17 H 0.096 0.904 18 C -0.039 4.039 19 N -0.304 5.304 20 C -0.358 4.358 21 H 0.095 0.905 22 C -0.198 4.198 23 N -0.557 5.557 24 Si 0.743 3.257 25 H -0.215 1.215 26 H -0.207 1.207 27 H -0.217 1.217 28 C -0.050 4.050 29 H 0.243 0.757 30 H 0.180 0.820 31 H 0.185 0.815 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.397 -3.963 -14.055 15.568 hybrid contribution -1.102 0.524 1.631 2.037 sum -6.499 -3.440 -12.424 14.437 Atomic orbital electron populations 1.24907 0.95701 0.98872 0.98382 1.19612 0.91467 1.01796 1.02151 1.16800 0.88058 1.05391 0.94791 1.23069 0.89785 0.92452 0.96853 1.67774 1.07509 1.13393 1.30279 1.22993 1.00840 0.90364 0.85986 1.21068 0.94135 1.05028 0.96613 1.17977 0.84489 0.81075 0.82683 1.90767 1.28858 1.45617 1.77412 1.48700 1.24943 1.34159 1.23534 1.22527 0.93817 0.99373 0.85291 1.21802 0.88361 0.88906 0.94830 0.86307 1.22586 0.96733 0.99991 0.98300 1.22464 0.96431 0.99896 0.97334 1.21947 0.95503 0.92320 0.87769 0.90369 1.23290 0.86258 0.94382 0.99998 1.45169 1.12714 1.68803 1.03703 1.18995 1.10970 1.22664 0.83168 0.90545 1.24838 0.99569 0.98176 0.97237 1.69843 1.30648 1.32740 1.22496 0.86124 0.78247 0.79125 0.82239 1.21526 1.20662 1.21694 1.22043 0.92780 0.91697 0.98474 0.75666 0.82020 0.81514 0.91075 0.89906 0.92795 0.92696 0.93108 0.92505 0.90911 0.91080 0.93389 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 19.25 29.55 0.57 -0.80 16 2 C -0.15 -1.61 13.27 -38.83 -0.52 -2.12 16 3 C -0.05 -0.57 5.73 -106.91 -0.61 -1.18 16 4 C 0.14 1.52 10.90 -17.06 -0.19 1.34 16 5 N -0.48 -6.19 10.33 -12.59 -0.13 -6.32 16 6 C 0.16 2.11 10.84 -17.09 -0.19 1.92 16 7 C -0.16 -2.40 5.22 -104.87 -0.55 -2.94 16 8 C 0.55 9.90 7.34 -12.32 -0.09 9.81 16 9 O -0.55 -11.41 16.48 5.32 0.09 -11.33 16 10 N -0.58 -10.75 2.28 -170.91 -0.39 -11.14 16 11 C 0.11 2.39 5.78 -3.22 -0.02 2.37 16 12 C 0.17 3.69 3.10 -65.88 -0.20 3.49 16 13 H 0.12 2.97 6.40 -51.93 -0.33 2.64 16 14 C -0.14 -2.57 6.16 -25.47 -0.16 -2.72 16 15 C -0.12 -2.08 6.19 -25.25 -0.16 -2.24 16 16 C 0.13 2.47 4.27 -65.66 -0.28 2.19 16 17 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 18 C 0.09 1.43 4.58 -2.05 -0.01 1.42 16 19 N -0.58 -13.28 2.80 -152.84 -0.43 -13.71 16 20 C -0.23 -5.82 10.37 -15.06 -0.16 -5.97 16 21 H 0.08 1.89 7.85 -52.49 -0.41 1.48 16 22 C 0.00 -0.02 5.41 -17.43 -0.09 -0.11 16 23 N -0.91 -24.43 10.42 55.49 0.58 -23.85 16 24 Si 0.91 20.75 29.57 -169.99 -5.03 15.73 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 C -0.02 -0.31 7.18 -38.46 -0.28 -0.59 16 29 H 0.23 1.01 7.80 -54.10 -0.42 0.59 16 30 H 0.16 1.34 8.06 -52.48 -0.42 0.91 16 31 H 0.17 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.07 1.52 7.15 -51.93 -0.37 1.15 16 33 H 0.08 2.01 7.79 -51.93 -0.40 1.60 16 34 H 0.05 0.98 7.83 -51.93 -0.41 0.58 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.80 7.86 -51.93 -0.41 0.39 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 39 H 0.07 1.01 4.63 -51.93 -0.24 0.77 16 40 H 0.26 6.76 8.31 -40.82 -0.34 6.43 16 41 H 0.15 1.88 6.48 -52.48 -0.34 1.54 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -29.32 339.56 -8.12 -37.44 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.01 Total: 4.22 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.92 Total: 3.85 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.37 Total: -55.02 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.32 -8.12 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029466521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.250 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds