Wall clock time and date at job start Tue Mar 31 2020 04:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48497 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47099 * 299.99842 * 3 2 1 6 6 H 1.48500 * 109.47306 * 59.99793 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 11 11 C 1.54322 * 107.27336 * 178.97600 * 10 9 7 12 12 H 1.09002 * 110.71963 * 96.17078 * 11 10 9 13 13 N 1.46502 * 110.72235 * 219.26811 * 11 10 9 14 14 C 1.34774 * 119.99871 * 271.16020 * 13 11 10 15 15 O 1.21279 * 120.00430 * 359.97438 * 14 13 11 16 16 C 1.50702 * 119.99953 * 180.02562 * 14 13 11 17 17 N 1.46504 * 109.47159 * 179.97438 * 16 14 13 18 18 C 1.33877 * 122.75765 * 269.70278 * 17 16 14 19 19 O 1.21227 * 125.39571 * 359.97438 * 18 17 16 20 20 C 1.51318 * 109.20405 * 179.84222 * 18 17 16 21 21 C 1.54226 * 103.55236 * 0.38864 * 20 18 17 22 22 C 1.33871 * 122.76553 * 89.99893 * 17 16 14 23 23 O 1.21233 * 125.39616 * 0.02562 * 22 17 16 24 24 C 1.55157 * 102.94206 * 337.80559 * 11 10 9 25 25 H 1.09000 * 111.00495 * 153.57626 * 24 11 10 26 26 O 1.42891 * 111.00836 * 277.43019 * 24 11 10 27 27 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 28 28 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.88222 * 59.56024 * 10 9 7 30 30 H 1.09005 * 110.01447 * 298.46604 * 10 9 7 31 31 H 0.96999 * 120.00288 * 91.15371 * 13 11 10 32 32 H 1.09007 * 109.46574 * 299.99453 * 16 14 13 33 33 H 1.08997 * 109.47773 * 59.99180 * 16 14 13 34 34 H 1.09000 * 110.79232 * 241.78169 * 20 18 17 35 35 H 1.08997 * 110.54397 * 118.87876 * 20 18 17 36 36 H 1.08997 * 110.60353 * 241.25655 * 21 20 18 37 37 H 1.09002 * 110.73709 * 118.35963 * 21 20 18 38 38 H 0.96698 * 114.00663 * 180.02562 * 26 24 11 39 39 H 1.08998 * 110.36876 * 322.93757 * 27 9 7 40 40 H 1.09009 * 110.36320 * 85.14431 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.9320 -3.7274 0.0005 11 6 0.7787 -4.7524 0.0269 12 1 0.5468 -5.0980 -0.9806 13 7 1.1101 -5.8833 0.8972 14 6 1.7593 -6.9524 0.3952 15 8 2.0689 -6.9784 -0.7771 16 6 2.0997 -8.1159 1.2904 17 7 2.7977 -9.1427 0.5126 18 6 2.1566 -10.1348 -0.1175 19 8 0.9561 -10.3031 -0.1229 20 6 3.1677 -11.0109 -0.8244 21 6 4.5193 -10.3518 -0.4817 22 6 4.1294 -9.1694 0.3781 23 8 4.9007 -8.3726 0.8680 24 6 -0.4017 -3.9325 0.6114 25 1 -1.3589 -4.3329 0.2773 26 8 -0.3375 -3.8877 2.0381 27 6 -0.1413 -2.5333 -0.0007 28 1 -0.4851 0.8400 -0.0004 29 1 2.5580 -3.8509 0.8843 30 1 2.5306 -3.8659 -0.8999 31 1 0.8623 -5.8627 1.8348 32 1 2.7428 -7.7743 2.1015 33 1 1.1833 -8.5354 1.7055 34 1 2.9997 -11.0041 -1.9013 35 1 3.1284 -12.0291 -0.4375 36 1 5.0237 -10.0172 -1.3882 37 1 5.1536 -11.0398 0.0772 38 1 -1.0552 -3.3863 2.4487 39 1 -0.5998 -1.7589 0.6142 40 1 -0.5264 -2.4851 -1.0194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084040747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:56 Heat of formation + Delta-G solvation = -137.813536 kcal Electronic energy + Delta-G solvation = -26241.329493 eV Core-core repulsion = 22249.518902 eV Total energy + Delta-G solvation = -3991.810591 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.97678 -40.98807 -39.67105 -39.41246 -36.93051 -36.41455 -35.57147 -34.45731 -33.61734 -30.67180 -29.46998 -28.22412 -27.11414 -26.33460 -23.33603 -22.83769 -22.22488 -21.46910 -20.53018 -19.36602 -18.75930 -18.55352 -18.15652 -17.52943 -17.37992 -16.95996 -16.66833 -16.27874 -15.87152 -15.77129 -15.43772 -15.28834 -14.92571 -14.80189 -14.70103 -14.38357 -14.31282 -13.73400 -13.53249 -13.33667 -13.26307 -12.96983 -12.78861 -12.30785 -12.15186 -12.09756 -11.95766 -11.91057 -11.80397 -11.64709 -11.12743 -10.96264 -10.77501 -10.70268 -10.23642 -8.95180 -7.84505 -5.28387 0.49898 1.23282 1.37618 1.44610 1.45121 1.55853 1.70077 2.13267 2.46106 3.13567 3.21380 3.26306 3.26524 3.48551 3.64243 3.69432 3.79067 3.86663 3.99105 4.08523 4.20349 4.23227 4.26092 4.42862 4.66828 4.76809 4.78035 4.87225 4.91425 4.93076 5.28163 5.36526 5.42556 5.67081 5.74531 6.21486 6.28660 6.37969 6.69817 6.86233 7.04870 7.06540 7.68419 8.31235 9.17716 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.003145 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.522810 B = 8901.278828 C = 9556.080859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.059 4.059 3 Si 0.982 3.018 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.133 3.867 11 C 0.154 3.846 12 H 0.094 0.906 13 N -0.691 5.691 14 C 0.495 3.505 15 O -0.578 6.578 16 C 0.080 3.920 17 N -0.567 5.567 18 C 0.523 3.477 19 O -0.521 6.521 20 C -0.139 4.139 21 C -0.140 4.140 22 C 0.519 3.481 23 O -0.524 6.524 24 C 0.093 3.907 25 H 0.095 0.905 26 O -0.562 6.562 27 C 0.126 3.874 28 H 0.251 0.749 29 H 0.021 0.979 30 H 0.006 0.994 31 H 0.421 0.579 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.157 0.843 38 H 0.397 0.603 39 H 0.093 0.907 40 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -24.814 3.348 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.810 3.190 4 H -0.198 1.198 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.342 5.342 10 C 0.006 3.994 11 C 0.048 3.952 12 H 0.112 0.888 13 N -0.344 5.344 14 C 0.281 3.719 15 O -0.458 6.458 16 C -0.045 4.045 17 N -0.309 5.309 18 C 0.315 3.685 19 O -0.395 6.395 20 C -0.178 4.178 21 C -0.179 4.179 22 C 0.311 3.689 23 O -0.399 6.399 24 C 0.032 3.968 25 H 0.113 0.887 26 O -0.370 6.370 27 C 0.001 3.999 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.024 0.976 31 H 0.260 0.740 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.156 0.844 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.248 0.752 39 H 0.111 0.889 40 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 3.497 -24.640 2.699 25.033 hybrid contribution -0.323 2.047 0.277 2.091 sum 3.174 -22.593 2.976 23.008 Atomic orbital electron populations 1.69937 1.05894 1.25255 1.58248 1.25563 0.96790 1.00645 1.02158 0.84963 0.77806 0.79168 0.77052 1.19824 1.21606 1.21167 1.19419 0.90811 0.83785 1.43277 0.91046 1.44553 1.02697 1.00159 1.86775 1.21597 0.95017 0.85711 0.97033 1.21809 0.93976 0.84901 0.94522 0.88826 1.45578 1.57995 1.16235 1.14566 1.21435 0.77027 0.84543 0.88890 1.90685 1.54502 1.81618 1.18947 1.21640 1.02180 0.86883 0.93819 1.46621 1.10252 1.26327 1.47695 1.21777 0.89305 0.80702 0.76719 1.90760 1.15877 1.72937 1.59913 1.22587 0.89779 1.01102 1.04299 1.22593 0.99364 0.94134 1.01787 1.21857 0.80478 0.87148 0.79375 1.90784 1.55292 1.44346 1.49437 1.23245 0.96590 0.94904 0.82038 0.88710 1.86193 1.56014 1.77036 1.17763 1.22528 0.84428 0.95257 0.97729 0.93955 0.96086 0.97591 0.74028 0.84323 0.83477 0.84435 0.82434 0.84658 0.82520 0.75230 0.88895 0.98153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.04 10.09 21.65 0.22 -54.82 16 2 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 3 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.24 -14.29 10.27 84.03 0.86 -13.43 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.62 -33.17 3.39 -691.95 -2.35 -35.51 16 10 C 0.13 6.29 6.99 86.73 0.61 6.90 16 11 C 0.15 5.86 3.15 46.18 0.15 6.00 16 12 H 0.09 3.72 7.62 -2.39 -0.02 3.70 16 13 N -0.69 -21.32 5.08 -436.92 -2.22 -23.54 16 14 C 0.49 15.55 7.90 87.66 0.69 16.24 16 15 O -0.58 -22.85 16.11 -3.03 -0.05 -22.90 16 16 C 0.08 1.76 6.04 85.63 0.52 2.28 16 17 N -0.57 -12.07 2.04 -760.71 -1.55 -13.62 16 18 C 0.52 9.99 8.08 87.99 0.71 10.70 16 19 O -0.52 -13.71 17.47 -2.87 -0.05 -13.76 16 20 C -0.14 -0.96 7.03 30.46 0.21 -0.75 16 21 C -0.14 -1.07 7.03 30.46 0.21 -0.86 16 22 C 0.52 10.68 8.08 87.99 0.71 11.39 16 23 O -0.52 -15.36 17.48 -2.88 -0.05 -15.41 16 24 C 0.09 3.31 4.29 31.99 0.14 3.45 16 25 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 26 O -0.56 -17.96 12.25 -148.98 -1.82 -19.78 16 27 C 0.13 6.06 5.62 86.86 0.49 6.55 16 28 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.02 1.02 8.03 -2.39 -0.02 1.00 16 30 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.42 10.92 7.59 -92.71 -0.70 10.22 16 32 H 0.14 2.63 7.83 -2.38 -0.02 2.61 16 33 H 0.15 2.49 7.82 -2.39 -0.02 2.47 16 34 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.16 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.16 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.40 9.92 9.12 -74.06 -0.68 9.24 16 39 H 0.09 4.91 5.87 -2.39 -0.01 4.90 16 40 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 Total: -1.00 -85.94 341.77 -0.36 -86.30 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -0.28 Total: 19.14 kcal Atomic # 6 Polarization: 39.82 SS G_CDS: 5.77 Total: 45.59 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -5.91 Total: -127.50 kcal Atomic # 8 Polarization: -69.88 SS G_CDS: -1.97 Total: -71.85 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -85.94 -0.36 -86.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084040747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.509 kcal (2) G-P(sol) polarization free energy of solvation -85.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds