Wall clock time and date at job start Tue Mar 31 2020 05:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 112.84228 * 2 1 4 4 C 1.53654 * 113.53679 * 228.99693 * 2 1 3 5 5 H 1.09007 * 113.53427 * 155.20971 * 4 2 1 6 6 N 1.46498 * 113.53453 * 24.56213 * 4 2 1 7 7 C 1.34778 * 119.99832 * 157.48187 * 6 4 2 8 8 O 1.21583 * 120.00055 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99478 * 179.97438 * 7 6 4 10 10 C 1.46502 * 119.99536 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47036 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99680 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99822 * 179.97438 * 11 10 9 14 14 C 1.37100 * 119.99676 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99990 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99957 * 179.97438 * 14 13 11 17 17 N 1.31410 * 119.99690 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99989 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47120 * 89.99358 * 18 16 14 20 20 H 1.48498 * 109.46704 * 209.99717 * 18 16 14 21 21 H 1.48502 * 109.46984 * 329.99246 * 18 16 14 22 22 C 1.53745 * 87.57783 * 269.88172 * 4 2 1 23 23 H 1.08998 * 116.36160 * 94.49602 * 22 4 2 24 24 C 1.54487 * 113.36304 * 231.75451 * 22 4 2 25 25 C 1.54454 * 104.13227 * 93.06324 * 24 22 4 26 26 O 1.43911 * 104.92354 * 336.08800 * 25 24 22 27 27 C 1.44258 * 105.64833 * 40.21153 * 26 25 24 28 28 H 1.09002 * 114.89983 * 89.07512 * 27 26 25 29 29 H 1.08998 * 109.47446 * 308.49657 * 1 2 3 30 30 H 1.09007 * 109.46886 * 68.49686 * 1 2 3 31 31 H 1.09002 * 109.47026 * 188.49497 * 1 2 3 32 32 H 1.09002 * 109.47205 * 171.49878 * 3 2 1 33 33 H 1.09000 * 109.47299 * 291.50311 * 3 2 1 34 34 H 1.09001 * 109.46887 * 51.49939 * 3 2 1 35 35 H 0.97000 * 119.99722 * 337.48302 * 6 4 2 36 36 H 0.97002 * 120.00435 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.46800 * 299.99213 * 10 9 7 38 38 H 1.08993 * 109.47813 * 59.99980 * 10 9 7 39 39 H 0.96996 * 120.00472 * 359.97438 * 13 11 10 40 40 H 0.97001 * 119.99502 * 180.02562 * 17 16 14 41 41 H 1.09000 * 110.50045 * 211.72495 * 24 22 4 42 42 H 1.09007 * 110.49901 * 334.40347 * 24 22 4 43 43 H 1.08999 * 110.37451 * 94.70499 * 25 24 22 44 44 H 1.09004 * 110.37358 * 216.92633 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1239 1.4100 0.0000 4 6 2.1436 -0.9243 -1.0631 5 1 3.1492 -0.6321 -1.3658 6 7 1.2572 -1.1748 -2.2023 7 6 1.7736 -1.5617 -3.3856 8 8 2.9751 -1.7031 -3.5074 9 7 0.9581 -1.7927 -4.4335 10 6 1.5194 -2.2137 -5.7195 11 6 0.4049 -2.4030 -6.7162 12 8 -0.7451 -2.2060 -6.3846 13 7 0.6861 -2.7911 -7.9758 14 6 -0.3278 -2.9638 -8.8824 15 1 -1.3518 -2.7884 -8.5872 16 6 -0.0379 -3.3634 -10.1812 17 7 -1.0097 -3.5284 -11.0502 18 14 1.7332 -3.6660 -10.6920 19 1 2.0849 -5.0867 -10.4410 20 1 1.8897 -3.3652 -12.1377 21 1 2.6330 -2.7865 -9.9032 22 6 2.1205 -2.0436 -0.0094 23 1 1.2512 -2.7010 -0.0206 24 6 3.4828 -2.7516 0.1621 25 6 4.1637 -1.9847 1.3171 26 8 3.5434 -0.6861 1.3161 27 6 2.1433 -0.9239 1.0625 28 1 1.5377 -1.0923 1.9530 29 1 -0.3634 0.6397 0.8043 30 1 -0.3633 0.3767 -0.9562 31 1 -0.3633 -1.0164 0.1518 32 1 3.2016 1.3503 0.1519 33 1 1.9178 1.8911 -0.9561 34 1 1.6754 1.9932 0.8043 35 1 0.2987 -1.0623 -2.1049 36 1 -0.0005 -1.6809 -4.3359 37 1 2.2061 -1.4496 -6.0838 38 1 2.0562 -3.1536 -5.5915 39 1 1.6058 -2.9482 -8.2411 40 1 -0.8074 -3.8077 -11.9568 41 1 3.3381 -3.7978 0.4318 42 1 4.0732 -2.6698 -0.7506 43 1 3.9801 -2.4874 2.2666 44 1 5.2350 -1.8980 1.1355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344835708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:32 Heat of formation + Delta-G solvation = -82.587209 kcal Electronic energy + Delta-G solvation = -26095.980478 eV Core-core repulsion = 22242.397775 eV Total energy + Delta-G solvation = -3853.582703 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.70129 -39.64710 -38.34976 -36.64886 -34.48621 -33.73735 -33.30419 -32.16784 -31.79217 -29.20722 -27.85064 -27.77456 -25.02038 -23.90947 -23.36150 -21.00719 -20.74066 -19.65782 -19.09250 -18.79248 -17.92426 -17.21887 -16.25000 -15.76516 -15.71288 -15.48160 -15.21291 -14.98508 -14.56775 -14.32751 -14.09463 -13.92125 -13.73009 -13.48839 -13.12863 -12.78120 -12.52030 -12.47497 -12.41720 -12.17222 -12.13876 -12.08240 -11.62081 -11.31525 -11.24187 -11.19604 -10.88738 -10.64490 -10.39135 -10.11453 -10.06278 -9.83210 -9.70234 -9.14367 -8.77217 -8.67816 -8.30893 -6.41345 -3.93911 2.75469 2.99575 3.04267 3.12413 3.26776 3.32913 3.57213 3.88611 4.03185 4.19448 4.29114 4.38343 4.59061 4.63671 4.71860 4.81723 4.89924 4.99358 5.06125 5.13855 5.21835 5.31851 5.35732 5.44798 5.54806 5.62258 5.62629 5.68867 5.71170 5.77304 5.81779 5.85566 5.89374 6.00204 6.12933 6.47925 6.59433 6.63679 7.04446 7.44618 7.99798 8.16980 8.43991 8.73234 8.81221 9.29437 9.63146 10.70845 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.028169 B = 0.002563 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.753370 B =10921.873501 C =11443.552905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 C -0.134 4.134 4 C 0.169 3.831 5 H 0.119 0.881 6 N -0.737 5.737 7 C 0.705 3.295 8 O -0.597 6.597 9 N -0.725 5.725 10 C 0.126 3.874 11 C 0.439 3.561 12 O -0.580 6.580 13 N -0.576 5.576 14 C -0.310 4.310 15 H 0.121 0.879 16 C 0.045 3.955 17 N -0.875 5.875 18 Si 0.879 3.121 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.267 1.267 22 C -0.154 4.154 23 H 0.111 0.889 24 C -0.148 4.148 25 C 0.048 3.952 26 O -0.356 6.356 27 C 0.059 3.941 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.397 0.603 36 H 0.407 0.593 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.375 0.625 40 H 0.276 0.724 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.818 4.523 24.544 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.086 4.086 3 C -0.191 4.191 4 C 0.062 3.938 5 H 0.137 0.863 6 N -0.392 5.392 7 C 0.405 3.595 8 O -0.476 6.476 9 N -0.383 5.383 10 C -0.002 4.002 11 C 0.225 3.775 12 O -0.464 6.464 13 N -0.214 5.214 14 C -0.438 4.438 15 H 0.139 0.861 16 C -0.159 4.159 17 N -0.514 5.514 18 Si 0.705 3.295 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.192 1.192 22 C -0.174 4.174 23 H 0.129 0.871 24 C -0.186 4.186 25 C -0.028 4.028 26 O -0.275 6.275 27 C 0.000 4.000 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.233 0.767 36 H 0.245 0.755 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.208 0.792 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.180 4.663 24.387 26.142 hybrid contribution 0.349 -0.526 -0.601 0.871 sum 8.529 4.137 23.786 25.606 Atomic orbital electron populations 1.21578 0.92188 1.02521 1.02931 1.22229 0.96008 0.95829 0.94583 1.21628 1.01729 0.94033 1.01690 1.22397 0.95310 0.93438 0.82605 0.86321 1.45095 1.10258 1.74016 1.09864 1.15892 0.85330 0.78069 0.80182 1.90891 1.13220 1.59665 1.83823 1.44768 1.10885 1.72886 1.09740 1.20796 0.95393 1.01229 0.82818 1.19665 0.89674 0.84738 0.83469 1.90532 1.21357 1.56226 1.78295 1.42117 1.08961 1.60459 1.09876 1.19438 0.90483 1.43817 0.90111 0.86102 1.25066 0.98153 0.97097 0.95597 1.69619 1.31631 1.45093 1.05022 0.86668 0.84084 0.79350 0.79389 1.19393 1.19992 1.19184 1.24610 0.98937 0.96554 0.97341 0.87128 1.22904 0.95874 0.99855 0.99992 1.23419 0.98395 0.83523 0.97478 1.88898 1.18644 1.27067 1.92890 1.23979 0.84286 0.96004 0.95690 0.88835 0.91425 0.91272 0.91899 0.91282 0.92401 0.92442 0.76731 0.75534 0.89912 0.89924 0.79223 0.91388 0.90684 0.89679 0.92491 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 7.96 37.16 0.30 -0.58 16 2 C -0.09 -0.71 1.32 -153.87 -0.20 -0.91 16 3 C -0.13 -1.16 9.06 37.16 0.34 -0.82 16 4 C 0.17 1.79 2.97 -67.20 -0.20 1.59 16 5 H 0.12 1.57 7.29 -51.93 -0.38 1.19 16 6 N -0.74 -8.46 5.25 -57.96 -0.30 -8.76 16 7 C 0.71 10.90 8.57 -86.91 -0.74 10.16 16 8 O -0.60 -11.10 15.98 5.29 0.08 -11.01 16 9 N -0.73 -11.56 5.53 -66.41 -0.37 -11.93 16 10 C 0.13 2.20 6.15 -5.19 -0.03 2.17 16 11 C 0.44 9.60 7.85 -10.98 -0.09 9.52 16 12 O -0.58 -14.52 15.24 5.55 0.08 -14.44 16 13 N -0.58 -13.37 5.09 -10.96 -0.06 -13.43 16 14 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 15 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 16 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 17 N -0.87 -24.93 13.96 55.50 0.77 -24.16 16 18 Si 0.88 18.98 27.74 -169.99 -4.71 14.27 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 22 C -0.15 -1.39 4.43 -88.38 -0.39 -1.78 16 23 H 0.11 0.92 8.02 -51.93 -0.42 0.50 16 24 C -0.15 -1.32 6.66 -25.19 -0.17 -1.49 16 25 C 0.05 0.39 7.62 37.92 0.29 0.68 16 26 O -0.36 -3.54 10.03 -35.23 -0.35 -3.89 16 27 C 0.06 0.49 4.69 -25.36 -0.12 0.37 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.45 7.22 -51.93 -0.37 0.08 16 31 H 0.06 0.36 7.64 -51.93 -0.40 -0.03 16 32 H 0.07 0.67 7.15 -51.93 -0.37 0.30 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.40 3.70 6.65 -40.82 -0.27 3.43 16 36 H 0.41 6.32 7.45 -40.82 -0.30 6.02 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 40 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.93 7.93 -51.93 -0.41 0.51 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 356.56 15.07 5.37 5.37 Total: -1.00 -32.85 356.56 -7.27 -40.11 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -6.52 Total: 16.52 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -1.27 Total: 11.34 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.05 Total: -58.28 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.18 Total: -29.34 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.85 -7.27 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344835708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.473 kcal (2) G-P(sol) polarization free energy of solvation -32.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds