Wall clock time and date at job start Tue Mar 31 2020 05:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 112.84228 * 2 1 4 4 C 1.53654 * 113.53679 * 228.99693 * 2 1 3 5 5 H 1.09007 * 113.53427 * 155.20971 * 4 2 1 6 6 N 1.46498 * 113.53453 * 24.56213 * 4 2 1 7 7 C 1.34778 * 119.99832 * 157.48187 * 6 4 2 8 8 O 1.21583 * 120.00055 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99478 * 179.97438 * 7 6 4 10 10 C 1.46502 * 119.99536 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47036 * 180.02562 * 10 9 7 12 12 O 1.21293 * 119.99680 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99822 * 179.97438 * 11 10 9 14 14 C 1.37100 * 119.99676 * 179.97438 * 13 11 10 15 15 H 1.08001 * 119.99990 * 0.02562 * 14 13 11 16 16 C 1.38951 * 119.99957 * 179.97438 * 14 13 11 17 17 N 1.31410 * 119.99690 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99989 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47120 * 89.99358 * 18 16 14 20 20 H 1.48498 * 109.46704 * 209.99717 * 18 16 14 21 21 H 1.48502 * 109.46984 * 329.99246 * 18 16 14 22 22 C 1.53745 * 87.57783 * 269.88172 * 4 2 1 23 23 H 1.08998 * 116.36160 * 94.49602 * 22 4 2 24 24 C 1.54487 * 113.36304 * 231.75451 * 22 4 2 25 25 C 1.54454 * 104.13227 * 93.06324 * 24 22 4 26 26 O 1.43911 * 104.92354 * 336.08800 * 25 24 22 27 27 C 1.44258 * 105.64833 * 40.21153 * 26 25 24 28 28 H 1.09002 * 114.89983 * 89.07512 * 27 26 25 29 29 H 1.08998 * 109.47446 * 308.49657 * 1 2 3 30 30 H 1.09007 * 109.46886 * 68.49686 * 1 2 3 31 31 H 1.09002 * 109.47026 * 188.49497 * 1 2 3 32 32 H 1.09002 * 109.47205 * 171.49878 * 3 2 1 33 33 H 1.09000 * 109.47299 * 291.50311 * 3 2 1 34 34 H 1.09001 * 109.46887 * 51.49939 * 3 2 1 35 35 H 0.97000 * 119.99722 * 337.48302 * 6 4 2 36 36 H 0.97002 * 120.00435 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.46800 * 299.99213 * 10 9 7 38 38 H 1.08993 * 109.47813 * 59.99980 * 10 9 7 39 39 H 0.96996 * 120.00472 * 359.97438 * 13 11 10 40 40 H 0.97001 * 119.99502 * 180.02562 * 17 16 14 41 41 H 1.09000 * 110.50045 * 211.72495 * 24 22 4 42 42 H 1.09007 * 110.49901 * 334.40347 * 24 22 4 43 43 H 1.08999 * 110.37451 * 94.70499 * 25 24 22 44 44 H 1.09004 * 110.37358 * 216.92633 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1239 1.4100 0.0000 4 6 2.1436 -0.9243 -1.0631 5 1 3.1492 -0.6321 -1.3658 6 7 1.2572 -1.1748 -2.2023 7 6 1.7736 -1.5617 -3.3856 8 8 2.9751 -1.7031 -3.5074 9 7 0.9581 -1.7927 -4.4335 10 6 1.5194 -2.2137 -5.7195 11 6 0.4049 -2.4030 -6.7162 12 8 -0.7451 -2.2060 -6.3846 13 7 0.6861 -2.7911 -7.9758 14 6 -0.3278 -2.9638 -8.8824 15 1 -1.3518 -2.7884 -8.5872 16 6 -0.0379 -3.3634 -10.1812 17 7 -1.0097 -3.5284 -11.0502 18 14 1.7332 -3.6660 -10.6920 19 1 2.0849 -5.0867 -10.4410 20 1 1.8897 -3.3652 -12.1377 21 1 2.6330 -2.7865 -9.9032 22 6 2.1205 -2.0436 -0.0094 23 1 1.2512 -2.7010 -0.0206 24 6 3.4828 -2.7516 0.1621 25 6 4.1637 -1.9847 1.3171 26 8 3.5434 -0.6861 1.3161 27 6 2.1433 -0.9239 1.0625 28 1 1.5377 -1.0923 1.9530 29 1 -0.3634 0.6397 0.8043 30 1 -0.3633 0.3767 -0.9562 31 1 -0.3633 -1.0164 0.1518 32 1 3.2016 1.3503 0.1519 33 1 1.9178 1.8911 -0.9561 34 1 1.6754 1.9932 0.8043 35 1 0.2987 -1.0623 -2.1049 36 1 -0.0005 -1.6809 -4.3359 37 1 2.2061 -1.4496 -6.0838 38 1 2.0562 -3.1536 -5.5915 39 1 1.6058 -2.9482 -8.2411 40 1 -0.8074 -3.8077 -11.9568 41 1 3.3381 -3.7978 0.4318 42 1 4.0732 -2.6698 -0.7506 43 1 3.9801 -2.4874 2.2666 44 1 5.2350 -1.8980 1.1355 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344835708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:32 Heat of formation + Delta-G solvation = -108.524285 kcal Electronic energy + Delta-G solvation = -26097.105194 eV Core-core repulsion = 22242.397775 eV Total energy + Delta-G solvation = -3854.707419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.46006 -40.98269 -40.01978 -37.43627 -36.27351 -35.28625 -34.30968 -33.81646 -32.90304 -29.91444 -29.32749 -28.37974 -26.51418 -25.18449 -24.01850 -21.94148 -21.71013 -21.47111 -20.59222 -19.99905 -19.17043 -18.06356 -17.45613 -17.03821 -16.88556 -16.72216 -16.52751 -16.17019 -15.74418 -15.72145 -15.20383 -14.97222 -14.82235 -14.42897 -14.36659 -14.24946 -13.99483 -13.69995 -13.41893 -13.12363 -13.00898 -12.96328 -12.79557 -12.44681 -12.30898 -12.04305 -12.00412 -11.90119 -11.58345 -11.57990 -11.41023 -11.08414 -10.65415 -10.51069 -10.36619 -10.30022 -9.75969 -8.45611 -6.07439 1.31352 1.34087 1.43673 1.59280 1.78822 2.09462 2.20467 2.66481 2.79311 3.10827 3.17477 3.29951 3.53104 3.62471 3.94151 3.99366 4.07775 4.18102 4.24869 4.34554 4.39632 4.40275 4.44332 4.51841 4.72196 4.77813 4.85314 4.89082 4.95622 4.98509 5.07730 5.11277 5.16524 5.29225 5.36912 5.42917 5.48828 5.56784 5.88252 5.92324 5.97902 6.48894 6.78157 7.01930 7.28740 7.52954 7.78094 8.70808 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.028169 B = 0.002563 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.753370 B =10921.873501 C =11443.552905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C -0.132 4.132 4 C 0.157 3.843 5 H 0.088 0.912 6 N -0.720 5.720 7 C 0.705 3.295 8 O -0.629 6.629 9 N -0.727 5.727 10 C 0.139 3.861 11 C 0.447 3.553 12 O -0.613 6.613 13 N -0.578 5.578 14 C -0.331 4.331 15 H 0.064 0.936 16 C -0.008 4.008 17 N -0.926 5.926 18 Si 0.958 3.042 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.233 1.233 22 C -0.152 4.152 23 H 0.124 0.876 24 C -0.149 4.149 25 C 0.048 3.952 26 O -0.377 6.377 27 C 0.064 3.936 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.410 0.590 36 H 0.410 0.590 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.392 0.608 40 H 0.281 0.719 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.394 4.345 26.364 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.079 4.079 3 C -0.190 4.190 4 C 0.051 3.949 5 H 0.106 0.894 6 N -0.376 5.376 7 C 0.405 3.595 8 O -0.511 6.511 9 N -0.384 5.384 10 C 0.010 3.990 11 C 0.234 3.766 12 O -0.499 6.499 13 N -0.218 5.218 14 C -0.460 4.460 15 H 0.082 0.918 16 C -0.208 4.208 17 N -0.566 5.566 18 Si 0.778 3.222 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.157 1.157 22 C -0.172 4.172 23 H 0.141 0.859 24 C -0.187 4.187 25 C -0.028 4.028 26 O -0.297 6.297 27 C 0.006 3.994 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.248 0.752 36 H 0.247 0.753 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.228 0.772 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.742 4.503 26.261 28.370 hybrid contribution -0.229 -0.423 -1.074 1.177 sum 9.512 4.080 25.188 27.231 Atomic orbital electron populations 1.21613 0.90375 1.03660 1.03487 1.22258 0.97260 0.95063 0.93276 1.21608 1.00912 0.94592 1.01864 1.22489 0.94052 0.95651 0.82724 0.89365 1.45002 1.11081 1.72630 1.08841 1.15985 0.84754 0.77957 0.80809 1.90873 1.14584 1.61158 1.84437 1.44717 1.11005 1.73203 1.09497 1.20677 0.93429 1.02783 0.82119 1.20486 0.90290 0.82266 0.83564 1.90520 1.23491 1.56928 1.78996 1.41922 1.08849 1.61293 1.09743 1.19031 0.89407 1.45729 0.91793 0.91778 1.26054 1.03993 0.95899 0.94823 1.69779 1.34854 1.46185 1.05746 0.85453 0.77264 0.80325 0.79141 1.18064 1.19863 1.15658 1.24623 0.99399 0.96529 0.96623 0.85853 1.22887 0.95616 1.00910 0.99265 1.23517 0.98478 0.82861 0.97951 1.88882 1.19613 1.28175 1.93001 1.24075 0.83922 0.95181 0.96221 0.86612 0.89968 0.91415 0.90749 0.92841 0.93050 0.90995 0.75249 0.75276 0.88294 0.88085 0.77242 0.90926 0.89299 0.92310 0.90500 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 7.96 71.98 0.57 -0.80 16 2 C -0.08 -1.16 1.32 -51.77 -0.07 -1.22 16 3 C -0.13 -2.16 9.06 71.98 0.65 -1.51 16 4 C 0.16 3.19 2.97 45.46 0.14 3.33 16 5 H 0.09 2.39 7.29 -2.38 -0.02 2.37 16 6 N -0.72 -15.68 5.25 -455.55 -2.39 -18.07 16 7 C 0.71 21.07 8.57 179.05 1.53 22.60 16 8 O -0.63 -22.98 15.98 -3.98 -0.06 -23.05 16 9 N -0.73 -22.27 5.53 -482.29 -2.67 -24.94 16 10 C 0.14 4.58 6.15 85.63 0.53 5.11 16 11 C 0.45 19.36 7.85 87.66 0.69 20.05 16 12 O -0.61 -31.25 15.24 -3.07 -0.05 -31.29 16 13 N -0.58 -26.50 5.09 -306.98 -1.56 -28.07 16 14 C -0.33 -18.70 10.16 84.04 0.85 -17.84 16 15 H 0.06 4.27 7.39 -2.91 -0.02 4.25 16 16 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 17 N -0.93 -54.27 13.96 21.66 0.30 -53.97 16 18 Si 0.96 38.09 27.74 68.60 1.90 39.99 16 19 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 22 C -0.15 -2.46 4.43 -9.35 -0.04 -2.50 16 23 H 0.12 1.70 8.02 -2.39 -0.02 1.68 16 24 C -0.15 -2.49 6.66 31.59 0.21 -2.28 16 25 C 0.05 0.71 7.62 72.48 0.55 1.26 16 26 O -0.38 -7.01 10.03 -148.98 -1.49 -8.51 16 27 C 0.06 0.93 4.69 31.48 0.15 1.08 16 28 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.73 7.22 -2.38 -0.02 0.71 16 31 H 0.07 0.61 7.64 -2.39 -0.02 0.60 16 32 H 0.05 1.04 7.15 -2.39 -0.02 1.02 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.41 6.93 6.65 -92.71 -0.62 6.31 16 36 H 0.41 12.35 7.45 -92.71 -0.69 11.66 16 37 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.39 15.13 5.76 -92.71 -0.53 14.59 16 40 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.30 7.93 -2.38 -0.02 1.28 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -74.60 356.56 -0.64 -75.25 By element: Atomic # 1 Polarization: 46.20 SS G_CDS: -0.85 Total: 45.35 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 6.23 Total: 27.31 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -6.32 Total: -125.05 kcal Atomic # 8 Polarization: -61.24 SS G_CDS: -1.60 Total: -62.85 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -74.60 -0.64 -75.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344835708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.277 kcal (2) G-P(sol) polarization free energy of solvation -74.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds