Wall clock time and date at job start Tue Mar 31 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00005 * 2 1 4 4 H 1.48494 * 109.47024 * 272.28932 * 3 2 1 5 5 H 1.48497 * 109.47314 * 32.28960 * 3 2 1 6 6 H 1.48501 * 109.46992 * 152.29157 * 3 2 1 7 7 C 1.38815 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99925 * 333.86078 * 7 2 1 9 9 N 1.36928 * 120.00210 * 153.85351 * 7 2 1 10 10 C 1.43428 * 120.63636 * 323.11007 * 9 7 2 11 11 C 1.55331 * 116.23693 * 269.36945 * 10 9 7 12 12 C 1.55184 * 108.87523 * 319.46287 * 11 10 9 13 13 O 1.39810 * 110.45885 * 322.14073 * 12 11 10 14 14 C 1.42382 * 108.53649 * 101.31783 * 13 12 11 15 15 H 1.09002 * 108.61791 * 28.31890 * 14 13 12 16 16 C 1.53001 * 108.61540 * 146.23251 * 14 13 12 17 17 N 1.46503 * 109.46928 * 302.05010 * 16 14 13 18 18 C 1.34776 * 119.99403 * 180.27592 * 17 16 14 19 19 O 1.21274 * 120.00691 * 359.72814 * 18 17 16 20 20 C 1.50705 * 119.99925 * 179.73006 * 18 17 16 21 21 H 1.09000 * 115.55025 * 277.88653 * 20 18 17 22 22 C 1.53007 * 117.49753 * 63.54607 * 20 18 17 23 23 C 1.52999 * 117.50134 * 132.16758 * 20 18 17 24 24 H 1.09004 * 117.49705 * 145.02488 * 23 20 18 25 25 C 1.50698 * 117.49797 * 0.02562 * 23 20 18 26 26 N 1.34778 * 119.99554 * 82.77307 * 25 23 20 27 27 O 1.21274 * 120.00126 * 262.76956 * 25 23 20 28 28 C 1.46918 * 113.68484 * 267.27412 * 14 13 12 29 29 H 0.97001 * 119.99824 * 0.02562 * 1 2 3 30 30 H 1.08999 * 108.12779 * 31.12901 * 10 9 7 31 31 H 1.08994 * 108.12927 * 147.82671 * 10 9 7 32 32 H 1.09002 * 109.56893 * 79.28154 * 11 10 9 33 33 H 1.09003 * 109.57281 * 199.51992 * 11 10 9 34 34 H 1.09005 * 109.26106 * 82.42699 * 12 11 10 35 35 H 1.09006 * 109.25862 * 201.90118 * 12 11 10 36 36 H 1.09000 * 109.46878 * 182.05677 * 16 14 13 37 37 H 1.08995 * 109.47194 * 62.05247 * 16 14 13 38 38 H 0.96999 * 120.00320 * 0.02562 * 17 16 14 39 39 H 1.09001 * 117.49767 * 214.98379 * 22 20 18 40 40 H 1.08999 * 117.50026 * 359.97438 * 22 20 18 41 41 H 0.96996 * 120.00538 * 359.97438 * 26 25 23 42 42 H 0.97005 * 119.99929 * 179.97438 * 26 25 23 43 43 H 1.09002 * 109.98663 * 176.19479 * 28 14 13 44 44 H 1.08995 * 109.99067 * 297.46915 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4492 2.0743 -1.3989 5 1 1.4727 2.6382 0.7479 6 1 3.5711 1.4266 0.6510 7 6 2.0102 -1.2022 0.0005 8 1 1.5530 -2.0895 0.4130 9 7 3.2744 -1.2631 -0.5220 10 6 3.6228 -0.4975 -1.6837 11 6 3.4157 -1.1974 -3.0549 12 6 3.8628 -2.6786 -2.9351 13 8 4.9966 -2.7827 -2.1237 14 6 4.5906 -3.2268 -0.8333 15 1 3.6852 -3.8244 -0.9399 16 6 5.6940 -4.1132 -0.2522 17 7 5.9425 -5.2392 -1.1560 18 6 6.8758 -6.1601 -0.8441 19 8 7.5133 -6.0542 0.1820 20 6 7.1272 -7.3218 -1.7707 21 1 6.4376 -8.1600 -1.6716 22 6 7.6596 -7.0068 -3.1702 23 6 8.5809 -7.6404 -2.1259 24 1 8.8480 -8.6887 -2.2602 25 6 9.6518 -6.7690 -1.5219 26 7 10.0939 -7.0132 -0.2723 27 8 10.1158 -5.8481 -2.1601 28 6 4.3223 -2.1328 0.1099 29 1 -0.4850 0.8401 -0.0004 30 1 3.0305 0.4174 -1.6771 31 1 4.6736 -0.2191 -1.6038 32 1 2.3620 -1.1552 -3.3308 33 1 4.0126 -0.6943 -3.8156 34 1 3.0531 -3.2646 -2.5001 35 1 4.0936 -3.0659 -3.9276 36 1 5.3817 -4.4909 0.7213 37 1 6.6075 -3.5293 -0.1395 38 1 5.4328 -5.3238 -1.9769 39 1 7.3205 -7.6381 -3.9915 40 1 7.8275 -5.9594 -3.4208 41 1 9.7226 -7.7496 0.2384 42 1 10.7835 -6.4526 0.1164 43 1 3.9528 -2.5360 1.0528 44 1 5.2319 -1.5575 0.2818 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073772662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:21 Heat of formation + Delta-G solvation = -57.925606 kcal Electronic energy + Delta-G solvation = -26743.098783 eV Core-core repulsion = 22890.585487 eV Total energy + Delta-G solvation = -3852.513296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64900 -39.57471 -38.74874 -36.23052 -35.34792 -34.81780 -33.62709 -32.24689 -31.76531 -29.05637 -26.56870 -25.58477 -24.83900 -23.96268 -22.36529 -21.24187 -20.70000 -20.14757 -19.74221 -18.10229 -17.12144 -17.08500 -16.36165 -16.28941 -16.15326 -15.74852 -15.58812 -14.68538 -14.52745 -14.46660 -14.06505 -13.99162 -13.81589 -13.20324 -13.15922 -12.77846 -12.47708 -12.40358 -12.36793 -11.93984 -11.64389 -11.29229 -11.05356 -11.02992 -10.77732 -10.54316 -10.42239 -10.22286 -10.19159 -9.92032 -9.76689 -9.68342 -9.61159 -9.07268 -9.01139 -8.50714 -6.90895 -6.09791 -3.49071 2.37281 2.49659 2.92033 3.29218 3.30129 3.44641 3.45369 3.51757 4.21733 4.30925 4.41157 4.45903 4.47791 4.73292 4.84096 4.93703 5.15354 5.30692 5.33853 5.35356 5.37674 5.58424 5.69511 5.70842 5.76569 5.83831 5.96114 6.01244 6.12676 6.24145 6.42704 6.47151 6.55581 6.59614 6.67855 6.79156 6.85163 7.24842 7.45371 7.60986 7.97708 8.13052 8.16668 8.24497 8.91277 9.63059 10.06910 11.05413 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.026950 B = 0.003090 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.728015 B = 9058.592097 C = 9219.115525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.043 3.957 3 Si 0.875 3.125 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.276 4.276 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.149 3.851 11 C -0.168 4.168 12 C 0.065 3.935 13 O -0.355 6.355 14 C 0.063 3.937 15 H 0.070 0.930 16 C 0.116 3.884 17 N -0.710 5.710 18 C 0.535 3.465 19 O -0.535 6.535 20 C -0.166 4.166 21 H 0.142 0.858 22 C -0.131 4.131 23 C -0.163 4.163 24 H 0.138 0.862 25 C 0.551 3.449 26 N -0.833 5.833 27 O -0.546 6.546 28 C 0.112 3.888 29 H 0.264 0.736 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.404 0.596 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.403 0.597 42 H 0.400 0.600 43 H 0.081 0.919 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.648 -17.212 -4.824 22.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.159 4.159 3 Si 0.704 3.296 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.195 1.195 7 C -0.404 4.404 8 H 0.094 0.906 9 N -0.320 5.320 10 C 0.021 3.979 11 C -0.209 4.209 12 C -0.013 4.013 13 O -0.273 6.273 14 C 0.003 3.997 15 H 0.087 0.913 16 C -0.008 4.008 17 N -0.360 5.360 18 C 0.320 3.680 19 O -0.412 6.412 20 C -0.188 4.188 21 H 0.159 0.841 22 C -0.169 4.169 23 C -0.185 4.185 24 H 0.155 0.845 25 C 0.334 3.666 26 N -0.394 5.394 27 O -0.423 6.423 28 C -0.013 4.013 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.238 0.762 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.231 0.769 42 H 0.231 0.769 43 H 0.099 0.901 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.296 -16.417 -4.624 22.255 hybrid contribution -0.142 0.748 0.068 0.764 sum 14.154 -15.669 -4.556 21.601 Atomic orbital electron populations 1.69912 1.06102 1.26991 1.50195 1.25444 0.94974 0.97829 0.97618 0.87017 0.80697 0.84644 0.77220 1.21161 1.22838 1.19488 1.18699 0.88233 0.94765 1.38680 0.90552 1.44108 1.08847 1.53179 1.25863 1.20670 0.97566 0.93861 0.85801 1.23485 1.00873 0.96521 1.00010 1.22465 0.87901 0.97116 0.93777 1.87660 1.30280 1.87956 1.21400 1.21988 0.95460 0.95832 0.86402 0.91259 1.21735 0.99615 0.86524 0.92947 1.45825 1.39358 1.25235 1.25618 1.19566 0.79797 0.82556 0.86093 1.90706 1.48214 1.76217 1.26062 1.22339 0.97068 1.00508 0.98852 0.84061 1.23114 0.98910 1.03723 0.91111 1.22236 0.89941 1.01443 1.04842 0.84460 1.19429 0.81760 0.83661 0.81702 1.43562 1.43330 1.36421 1.16074 1.90755 1.58592 1.31211 1.61781 1.21028 0.92926 0.92119 0.95179 0.92570 0.93614 0.94974 0.91562 0.92632 0.92325 0.92074 0.90249 0.90862 0.76194 0.86697 0.86954 0.76909 0.76903 0.90105 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.97 55.49 0.78 -25.66 16 2 C 0.04 1.21 5.24 -17.43 -0.09 1.12 16 3 Si 0.87 22.05 25.44 -169.99 -4.32 17.73 16 4 H -0.28 -6.99 6.55 56.52 0.37 -6.62 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.28 -7.39 9.93 -15.06 -0.15 -7.54 16 8 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 9 N -0.60 -13.72 2.20 -174.50 -0.38 -14.10 16 10 C 0.15 3.26 4.33 -4.43 -0.02 3.25 16 11 C -0.17 -3.12 6.75 -24.34 -0.16 -3.28 16 12 C 0.06 1.05 6.38 38.31 0.24 1.29 16 13 O -0.35 -5.90 9.44 -32.42 -0.31 -6.20 16 14 C 0.06 1.00 2.13 -29.64 -0.06 0.93 16 15 H 0.07 1.11 6.76 -51.93 -0.35 0.76 16 16 C 0.12 1.62 5.25 -4.04 -0.02 1.60 16 17 N -0.71 -8.58 5.41 -60.29 -0.33 -8.91 16 18 C 0.54 6.53 6.89 -10.98 -0.08 6.46 16 19 O -0.53 -8.01 15.13 5.56 0.08 -7.93 16 20 C -0.17 -1.36 6.13 -91.77 -0.56 -1.92 16 21 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 22 C -0.13 -1.03 9.75 -26.73 -0.26 -1.29 16 23 C -0.16 -1.35 6.17 -91.77 -0.57 -1.91 16 24 H 0.14 0.69 8.14 -51.93 -0.42 0.27 16 25 C 0.55 6.54 6.22 -10.99 -0.07 6.48 16 26 N -0.83 -7.56 7.97 31.22 0.25 -7.31 16 27 O -0.55 -8.96 17.47 5.56 0.10 -8.86 16 28 C 0.11 2.12 5.58 -4.93 -0.03 2.09 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.05 1.11 3.23 -51.93 -0.17 0.94 16 31 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.98 6.66 -51.93 -0.35 0.63 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.40 4.23 8.26 -40.82 -0.34 3.89 16 39 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.11 1.17 7.95 -51.93 -0.41 0.76 16 41 H 0.40 2.69 8.83 -40.82 -0.36 2.33 16 42 H 0.40 3.44 8.93 -40.82 -0.36 3.07 16 43 H 0.08 1.47 8.00 -51.93 -0.42 1.05 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -34.88 354.81 -7.18 -42.06 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.56 Total: 6.58 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -1.83 Total: 7.26 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.31 Total: -55.98 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.12 Total: -22.99 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.32 Total: 17.73 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.88 -7.18 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073772662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.866 kcal (2) G-P(sol) polarization free energy of solvation -34.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds