Wall clock time and date at job start Tue Mar 31 2020 05:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 120.00105 * 2 1 4 4 H 1.48496 * 109.46880 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47049 * 299.99752 * 3 2 1 6 6 H 1.48495 * 109.47097 * 59.99783 * 3 2 1 7 7 C 1.38812 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99931 * 203.18251 * 7 2 1 9 9 N 1.36939 * 119.99752 * 23.17614 * 7 2 1 10 10 C 1.44460 * 118.51389 * 205.46897 * 9 7 2 11 11 C 1.54874 * 109.32672 * 268.93849 * 10 9 7 12 12 C 1.47691 * 109.68223 * 290.10213 * 11 10 9 13 13 O 1.42734 * 113.60534 * 60.80916 * 12 11 10 14 14 C 1.40516 * 113.47495 * 272.15561 * 13 12 11 15 15 H 1.09004 * 109.40481 * 335.30422 * 14 13 12 16 16 C 1.53001 * 109.40868 * 215.46585 * 14 13 12 17 17 N 1.46505 * 109.46601 * 64.84018 * 16 14 13 18 18 C 1.34780 * 119.99924 * 180.02562 * 17 16 14 19 19 O 1.21289 * 119.99903 * 359.97438 * 18 17 16 20 20 C 1.50697 * 120.00119 * 179.97438 * 18 17 16 21 21 H 1.08998 * 115.54686 * 294.66184 * 20 18 17 22 22 C 1.53000 * 117.49894 * 80.33344 * 20 18 17 23 23 C 1.52998 * 117.49826 * 148.95794 * 20 18 17 24 24 H 1.08997 * 117.50092 * 145.02101 * 23 20 18 25 25 C 1.50704 * 117.50075 * 359.97438 * 23 20 18 26 26 N 1.34771 * 119.99835 * 83.55167 * 25 23 20 27 27 O 1.21280 * 119.99964 * 263.56021 * 25 23 20 28 28 C 1.48182 * 118.51194 * 25.45580 * 9 7 2 29 29 H 0.97003 * 119.99852 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.49110 * 28.89615 * 10 9 7 31 31 H 1.08999 * 109.49421 * 148.95949 * 10 9 7 32 32 H 1.09007 * 109.44012 * 50.16794 * 11 10 9 33 33 H 1.09001 * 109.43368 * 170.03735 * 11 10 9 34 34 H 1.08996 * 108.64248 * 181.88398 * 12 11 10 35 35 H 1.08998 * 108.64185 * 299.85982 * 12 11 10 36 36 H 1.09004 * 109.47484 * 184.83534 * 16 14 13 37 37 H 1.08992 * 109.47124 * 304.84096 * 16 14 13 38 38 H 0.96997 * 120.00365 * 359.97438 * 17 16 14 39 39 H 1.08998 * 117.50144 * 214.98100 * 22 20 18 40 40 H 1.09005 * 117.49613 * 0.02562 * 22 20 18 41 41 H 0.96996 * 120.00264 * 0.02562 * 26 25 23 42 42 H 0.97007 * 120.00018 * 180.02562 * 26 25 23 43 43 H 1.08994 * 109.23473 * 18.45151 * 28 9 7 44 44 H 1.09008 * 109.22991 * 259.07624 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0249 -1.2397 0.3687 9 7 1.4084 -2.3404 -0.4657 10 6 1.8717 -3.6169 0.0271 11 6 2.9897 -4.1501 -0.9026 12 6 2.4107 -4.5388 -2.2045 13 8 1.7846 -3.4590 -2.8968 14 6 0.4338 -3.2818 -2.5529 15 1 0.0270 -4.2240 -2.1856 16 6 -0.3512 -2.8363 -3.7883 17 7 -0.3388 -3.9079 -4.7872 18 6 -0.9713 -3.7384 -5.9652 19 8 -1.5512 -2.6989 -6.1981 20 6 -0.9581 -4.8404 -6.9930 21 1 0.0186 -5.0787 -7.4141 22 6 -1.9472 -5.9927 -6.8061 23 6 -2.1738 -4.9620 -7.9140 24 1 -1.9970 -5.2804 -8.9414 25 6 -3.2930 -3.9710 -7.7236 26 7 -3.2223 -2.7554 -8.3012 27 8 -4.2573 -4.2674 -7.0504 28 6 0.3112 -2.2069 -1.4527 29 1 -0.4850 0.8401 0.0004 30 1 2.2648 -3.4961 1.0365 31 1 1.0423 -4.3239 0.0418 32 1 3.7365 -3.3710 -1.0559 33 1 3.4613 -5.0181 -0.4418 34 1 3.2049 -4.9423 -2.8325 35 1 1.6693 -5.3200 -2.0368 36 1 -1.3804 -2.6158 -3.5048 37 1 0.1094 -1.9424 -4.2086 38 1 0.1252 -4.7391 -4.6012 39 1 -1.6213 -6.9891 -7.1045 40 1 -2.6077 -5.9534 -5.9399 41 1 -2.4512 -2.5185 -8.8399 42 1 -3.9426 -2.1174 -8.1784 43 1 0.3576 -1.2185 -1.9096 44 1 -0.6457 -2.3219 -0.9434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073772663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:25 Heat of formation + Delta-G solvation = -66.034411 kcal Electronic energy + Delta-G solvation = -26695.505845 eV Core-core repulsion = 22842.640925 eV Total energy + Delta-G solvation = -3852.864920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.54682 -39.17981 -38.51512 -36.13016 -35.16655 -34.62429 -33.49771 -32.56287 -31.13183 -28.90179 -26.24688 -25.41752 -24.72344 -23.87303 -22.38723 -21.00653 -20.62494 -19.98567 -19.48491 -17.99815 -17.01079 -16.97905 -16.36093 -16.17780 -16.02927 -15.61062 -15.07551 -14.82977 -14.37225 -14.19246 -13.92542 -13.86702 -13.43450 -13.13167 -12.89945 -12.57080 -12.42313 -12.34100 -12.30032 -11.81166 -11.22248 -11.00484 -10.95329 -10.87461 -10.73257 -10.60402 -10.24292 -10.10550 -10.04192 -9.92996 -9.80438 -9.67240 -9.51242 -8.94204 -8.87670 -8.39453 -6.73249 -5.80946 -3.18929 2.49604 2.57412 3.01480 3.37609 3.40439 3.48377 3.50602 3.62306 4.22971 4.38249 4.45365 4.51351 4.54901 4.92249 5.00396 5.09610 5.34567 5.38238 5.40495 5.41850 5.49103 5.59996 5.70098 5.72853 5.87837 5.97077 6.06727 6.19720 6.26449 6.35900 6.44859 6.58487 6.75351 6.81338 6.94973 7.10451 7.38034 7.46010 7.55534 7.83567 7.91482 8.25097 8.29918 8.43805 9.19071 9.87715 10.32106 11.27183 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.003486 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.730097 B = 8029.771412 C = 9089.028652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.008 3.992 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.584 5.584 10 C 0.157 3.843 11 C -0.183 4.183 12 C 0.079 3.921 13 O -0.360 6.360 14 C 0.058 3.942 15 H 0.049 0.951 16 C 0.125 3.875 17 N -0.713 5.713 18 C 0.533 3.467 19 O -0.530 6.530 20 C -0.168 4.168 21 H 0.139 0.861 22 C -0.127 4.127 23 C -0.163 4.163 24 H 0.137 0.863 25 C 0.559 3.441 26 N -0.831 5.831 27 O -0.551 6.551 28 C 0.165 3.835 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.400 0.600 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.400 0.600 42 H 0.400 0.600 43 H 0.076 0.924 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 -13.325 -15.488 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.390 4.390 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.029 3.971 11 C -0.224 4.224 12 C 0.002 3.998 13 O -0.278 6.278 14 C -0.003 4.003 15 H 0.067 0.933 16 C 0.001 3.999 17 N -0.363 5.363 18 C 0.318 3.682 19 O -0.407 6.407 20 C -0.189 4.189 21 H 0.157 0.843 22 C -0.165 4.165 23 C -0.185 4.185 24 H 0.154 0.846 25 C 0.343 3.657 26 N -0.392 5.392 27 O -0.429 6.429 28 C 0.039 3.961 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.234 0.766 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.228 0.772 42 H 0.231 0.769 43 H 0.095 0.905 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.122 -12.662 -15.289 19.883 hybrid contribution 0.879 0.786 -0.006 1.179 sum -0.243 -11.876 -15.295 19.366 Atomic orbital electron populations 1.70120 1.05330 1.25611 1.53037 1.24923 0.95052 0.98445 1.00669 0.86366 0.79705 0.84297 0.77269 1.20258 1.21475 1.21836 1.19155 0.95368 0.86335 1.38092 0.91708 1.43569 1.40441 1.01241 1.45210 1.20667 0.93471 0.87747 0.95239 1.22293 1.01763 1.00874 0.97474 1.21338 0.96378 0.87938 0.94162 1.87471 1.23596 1.53202 1.63564 1.23111 0.82459 1.00043 0.94653 0.93308 1.21600 1.00509 0.90324 0.87430 1.45881 1.54515 1.19703 1.16200 1.19565 0.78817 0.87640 0.82226 1.90742 1.43459 1.28188 1.78290 1.22363 0.96681 0.99664 1.00219 0.84340 1.23056 0.99675 0.93773 1.00009 1.22237 0.96171 1.01425 0.98633 0.84570 1.19273 0.86046 0.82397 0.78005 1.43492 1.25605 1.15850 1.54225 1.90731 1.34096 1.78433 1.39595 1.21567 0.90829 0.96562 0.87179 0.93641 0.93070 0.95393 0.91088 0.92329 0.91513 0.94712 0.90154 0.90419 0.76634 0.86755 0.87161 0.77196 0.76906 0.90532 0.94442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.48 55.49 0.64 -25.30 16 2 C 0.01 0.23 4.66 -17.43 -0.08 0.15 16 3 Si 0.89 21.90 29.61 -169.99 -5.03 16.86 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.26 -7.10 9.38 -15.06 -0.14 -7.24 16 8 H 0.07 1.76 7.93 -52.49 -0.42 1.35 16 9 N -0.58 -14.26 2.58 -171.49 -0.44 -14.71 16 10 C 0.16 3.17 5.68 -4.14 -0.02 3.15 16 11 C -0.18 -3.09 6.03 -28.31 -0.17 -3.27 16 12 C 0.08 1.20 6.05 34.59 0.21 1.41 16 13 O -0.36 -6.57 9.78 -34.08 -0.33 -6.90 16 14 C 0.06 1.03 2.35 -26.05 -0.06 0.97 16 15 H 0.05 0.80 7.20 -51.93 -0.37 0.43 16 16 C 0.12 2.09 5.24 -4.04 -0.02 2.07 16 17 N -0.71 -9.56 5.49 -60.29 -0.33 -9.89 16 18 C 0.53 7.24 7.26 -10.99 -0.08 7.16 16 19 O -0.53 -8.98 14.17 5.55 0.08 -8.90 16 20 C -0.17 -1.51 6.17 -91.77 -0.57 -2.08 16 21 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.13 -1.06 9.75 -26.73 -0.26 -1.32 16 23 C -0.16 -1.47 6.17 -91.77 -0.57 -2.04 16 24 H 0.14 0.77 8.14 -51.93 -0.42 0.35 16 25 C 0.56 7.20 5.82 -10.99 -0.06 7.13 16 26 N -0.83 -8.51 7.84 31.22 0.24 -8.27 16 27 O -0.55 -9.53 17.45 5.56 0.10 -9.43 16 28 C 0.16 3.82 4.55 -2.44 -0.01 3.81 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.05 1.05 7.97 -51.93 -0.41 0.64 16 31 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.47 7.27 -51.93 -0.38 0.09 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.40 4.41 8.46 -40.82 -0.35 4.06 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.11 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.40 3.09 8.83 -40.82 -0.36 2.73 16 42 H 0.40 3.96 8.93 -40.82 -0.36 3.60 16 43 H 0.08 2.01 6.42 -51.93 -0.33 1.67 16 44 H 0.04 0.93 8.05 -51.92 -0.42 0.51 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -35.22 359.37 -8.26 -43.47 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.75 Total: 7.75 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -1.84 Total: 9.90 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.11 Total: -58.17 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.16 Total: -25.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.22 -8.26 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073772663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.560 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds