Wall clock time and date at job start Tue Mar 31 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46491 * 109.46898 * 2 1 4 4 C 1.46768 * 124.35065 * 90.00033 * 3 2 1 5 5 C 1.54480 * 105.55098 * 163.03124 * 4 3 2 6 6 H 1.09002 * 110.96830 * 267.21959 * 5 4 3 7 7 N 1.46497 * 110.97174 * 143.49373 * 5 4 3 8 8 C 1.34769 * 120.00151 * 155.00020 * 7 5 4 9 9 O 1.21585 * 120.00170 * 359.97438 * 8 7 5 10 10 N 1.34785 * 120.00085 * 180.02562 * 8 7 5 11 11 C 1.47022 * 125.64591 * 0.02562 * 10 8 7 12 12 C 1.54327 * 107.26798 * 181.02578 * 11 10 8 13 13 C 1.55151 * 102.94277 * 22.19204 * 12 11 10 14 14 O 1.42901 * 111.00637 * 82.57802 * 13 12 11 15 15 C 1.50707 * 111.00441 * 206.42430 * 13 12 11 16 16 H 1.08005 * 119.99485 * 0.02562 * 15 13 12 17 17 C 1.37867 * 120.00381 * 179.97438 * 15 13 12 18 18 N 1.31516 * 120.00081 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00333 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46908 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47474 * 120.00206 * 19 17 15 22 22 H 1.48500 * 109.46940 * 240.00333 * 19 17 15 23 23 C 1.47423 * 125.64970 * 179.71671 * 10 8 7 24 24 C 1.54633 * 101.76342 * 25.37218 * 5 4 3 25 25 C 1.34570 * 124.43548 * 269.93385 * 3 2 1 26 26 O 1.21276 * 124.91592 * 0.40206 * 25 3 2 27 27 H 1.08999 * 109.47385 * 299.99699 * 1 2 3 28 28 H 1.08998 * 109.47619 * 60.00188 * 1 2 3 29 29 H 1.09003 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46783 * 239.99882 * 2 1 3 31 31 H 1.09000 * 109.46916 * 120.00046 * 2 1 3 32 32 H 1.09002 * 110.24468 * 43.98628 * 4 3 2 33 33 H 1.09002 * 110.24463 * 282.07386 * 4 3 2 34 34 H 0.97002 * 119.99988 * 334.99476 * 7 5 4 35 35 H 1.09000 * 109.88266 * 300.43790 * 11 10 8 36 36 H 1.08998 * 109.88419 * 61.44862 * 11 10 8 37 37 H 1.09001 * 110.72114 * 140.56030 * 12 11 10 38 38 H 1.09001 * 110.71752 * 263.64681 * 12 11 10 39 39 H 0.96698 * 113.99740 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00437 * 179.97438 * 18 17 15 41 41 H 1.08994 * 110.36572 * 274.74678 * 23 10 8 42 42 H 1.09004 * 110.36444 * 37.06672 * 23 10 8 43 43 H 1.09002 * 110.48603 * 93.88148 * 24 5 4 44 44 H 1.08998 * 110.48250 * 216.39069 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1734 3.3455 0.7504 6 1 4.2323 3.1061 0.8478 7 7 2.8438 4.5643 1.4935 8 6 3.7645 5.5385 1.6325 9 8 4.8689 5.4058 1.1417 10 7 3.4614 6.6596 2.3166 11 6 2.1713 6.9485 2.9597 12 6 2.2802 8.3503 3.5959 13 6 3.4329 9.0080 2.7922 14 8 2.9545 9.5467 1.5581 15 6 4.1249 10.0683 3.6096 16 1 3.7936 10.2758 4.6165 17 6 5.1814 10.7726 3.0726 18 7 5.5852 10.5196 1.8468 19 14 6.0397 12.0864 4.0861 20 1 5.3999 12.1766 5.4232 21 1 7.4724 11.7306 4.2465 22 1 5.9292 13.3958 3.3945 23 6 4.3707 7.7964 2.5494 24 6 2.7695 3.4775 -0.7364 25 6 2.2731 2.0982 -1.1099 26 8 2.1252 1.6969 -2.2447 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.8324 1.5531 1.9383 33 1 1.3635 2.5294 1.6438 34 1 1.9628 4.6701 1.8854 35 1 1.3756 6.9404 2.2147 36 1 1.9658 6.2045 3.7293 37 1 1.3521 8.9066 3.4647 38 1 2.5369 8.2753 4.6526 39 1 3.6395 9.9679 1.0211 40 1 6.3283 11.0154 1.4688 41 1 4.9914 7.6124 3.4262 42 1 4.9939 7.9695 1.6720 43 1 1.9738 4.2135 -0.8516 44 1 3.6325 3.7519 -1.3431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592031666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:04 Heat of formation + Delta-G solvation = -104.392230 kcal Electronic energy + Delta-G solvation = -26457.120323 eV Core-core repulsion = 22602.592083 eV Total energy + Delta-G solvation = -3854.528240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.80728 -39.55545 -37.56042 -36.60324 -34.88479 -34.30648 -32.44577 -32.16876 -30.19613 -29.10085 -27.93614 -27.47544 -25.08962 -23.71538 -22.83507 -21.65340 -19.98019 -19.68012 -19.42570 -17.74180 -17.16604 -17.02794 -16.53609 -15.88798 -15.36278 -15.18269 -14.95569 -14.48415 -14.37618 -14.00963 -13.89993 -13.76830 -13.50558 -13.24736 -12.98019 -12.86249 -12.64171 -12.32230 -12.15626 -11.94633 -11.65892 -11.53294 -11.42300 -11.34820 -11.08391 -10.83541 -10.63532 -10.49425 -10.21427 -10.11595 -9.72850 -9.43424 -9.04407 -9.00938 -8.71281 -8.40508 -7.76133 -6.31503 -4.41133 2.41051 2.58993 2.99403 3.18334 3.27262 3.30069 3.58398 4.10434 4.22281 4.27075 4.40411 4.66648 4.73031 4.79753 4.89774 4.95668 5.02141 5.14789 5.30482 5.35588 5.36286 5.50886 5.58668 5.66640 5.77419 5.79902 5.82098 5.98117 6.05867 6.25411 6.46495 6.55593 6.66178 6.82037 6.82827 6.87574 7.17656 7.28858 7.51708 7.72188 7.96145 7.97328 8.42304 8.62802 9.00675 9.28900 9.43915 10.75722 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.032506 B = 0.002780 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.184661 B =10069.649045 C =10346.293464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.122 3.878 3 N -0.621 5.621 4 C 0.098 3.902 5 C 0.159 3.841 6 H 0.114 0.886 7 N -0.742 5.742 8 C 0.718 3.282 9 O -0.593 6.593 10 N -0.625 5.625 11 C 0.105 3.895 12 C -0.116 4.116 13 C 0.249 3.751 14 O -0.584 6.584 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.070 3.930 18 N -0.894 5.894 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.111 3.889 24 C -0.171 4.171 25 C 0.523 3.477 26 O -0.531 6.531 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.395 0.605 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.387 0.613 40 H 0.271 0.729 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.103 -16.671 1.926 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.000 4.000 3 N -0.357 5.357 4 C -0.026 4.026 5 C 0.051 3.949 6 H 0.132 0.868 7 N -0.399 5.399 8 C 0.420 3.580 9 O -0.471 6.471 10 N -0.361 5.361 11 C -0.019 4.019 12 C -0.154 4.154 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.133 4.133 18 N -0.533 5.533 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.011 4.011 24 C -0.212 4.212 25 C 0.311 3.689 26 O -0.407 6.407 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.230 0.770 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.239 0.761 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.779 -17.279 1.019 19.408 hybrid contribution 0.537 0.942 0.565 1.223 sum -8.242 -16.337 1.584 18.367 Atomic orbital electron populations 1.22167 0.95755 1.02357 1.02559 1.21351 0.94394 0.80987 1.03228 1.48361 1.66437 1.13867 1.07001 1.22307 0.99743 0.92909 0.87618 1.21455 1.00706 0.83363 0.89352 0.86827 1.45009 1.16447 1.18134 1.60263 1.15472 0.83825 0.79404 0.79280 1.90903 1.21896 1.79952 1.54345 1.47915 1.15873 1.17683 1.54632 1.21945 0.86020 0.98166 0.95737 1.22595 1.00753 0.92853 0.99238 1.19633 0.87784 0.88907 0.82865 1.86058 1.41303 1.78083 1.33983 1.21526 1.15646 1.19549 1.00855 0.91422 1.25087 0.96145 0.96871 0.95175 1.69573 1.27959 1.41420 1.14333 0.86338 0.79231 0.81059 0.80205 1.19588 1.20750 1.20738 1.23240 0.93177 0.83396 1.01283 1.22911 1.04436 0.95355 0.98532 1.20966 0.76212 0.87422 0.84269 1.90714 1.53542 1.75316 1.21105 0.92363 0.92186 0.91407 0.89938 0.90257 0.89428 0.90624 0.76984 0.92595 0.93085 0.90756 0.90463 0.76121 0.91883 0.92359 0.90012 0.87271 0.87220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.12 0.91 6.66 -4.04 -0.03 0.89 16 3 N -0.62 -5.87 2.94 -172.37 -0.51 -6.37 16 4 C 0.10 0.76 7.07 -3.12 -0.02 0.73 16 5 C 0.16 1.75 3.53 -66.30 -0.23 1.51 16 6 H 0.11 1.42 7.54 -51.93 -0.39 1.03 16 7 N -0.74 -9.46 5.11 -57.08 -0.29 -9.75 16 8 C 0.72 13.28 8.49 -86.92 -0.74 12.54 16 9 O -0.59 -13.32 16.24 5.29 0.09 -13.24 16 10 N -0.62 -12.03 3.33 -176.10 -0.59 -12.61 16 11 C 0.10 1.66 6.15 -3.06 -0.02 1.64 16 12 C -0.12 -2.16 6.12 -24.90 -0.15 -2.31 16 13 C 0.25 5.80 0.89 -89.50 -0.08 5.72 16 14 O -0.58 -14.60 13.19 -35.23 -0.46 -15.07 16 15 C -0.54 -13.52 8.25 -34.44 -0.28 -13.81 16 16 H 0.07 1.67 7.77 -52.48 -0.41 1.26 16 17 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 18 N -0.89 -23.39 10.72 55.43 0.59 -22.80 16 19 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 C 0.11 2.56 5.64 -2.41 -0.01 2.55 16 24 C -0.17 -2.04 6.59 -26.74 -0.18 -2.22 16 25 C 0.52 6.62 8.03 -10.79 -0.09 6.54 16 26 O -0.53 -8.69 17.60 5.56 0.10 -8.59 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.47 7.80 -51.93 -0.40 0.07 16 34 H 0.40 4.02 7.41 -40.82 -0.30 3.72 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.08 1.34 8.02 -51.93 -0.42 0.93 16 39 H 0.39 10.11 6.93 45.56 0.32 10.42 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.06 1.38 8.03 -51.93 -0.42 0.96 16 42 H 0.08 2.16 7.64 -51.93 -0.40 1.76 16 43 H 0.11 1.29 8.08 -51.93 -0.42 0.87 16 44 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -31.73 361.68 -8.38 -40.11 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -6.19 Total: 13.27 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: -1.55 Total: 14.71 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.79 Total: -51.53 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.28 Total: -36.89 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.73 -8.38 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592031666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.285 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds