Wall clock time and date at job start Tue Mar 31 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99503 * 2 1 4 4 N 1.34773 * 120.00081 * 179.72727 * 2 1 3 5 5 C 1.47422 * 125.65007 * 359.68582 * 4 2 1 6 6 C 1.55127 * 104.72145 * 155.81775 * 5 4 2 7 7 C 1.55163 * 101.48383 * 37.30287 * 6 5 4 8 8 H 1.08993 * 110.72218 * 82.69114 * 7 6 5 9 9 C 1.50706 * 110.71823 * 205.96633 * 7 6 5 10 10 O 1.21284 * 120.00024 * 354.97521 * 9 7 6 11 11 N 1.34772 * 119.99972 * 174.97160 * 9 7 6 12 12 C 1.46502 * 120.00228 * 180.02562 * 11 9 7 13 13 H 1.09002 * 110.63779 * 36.68572 * 12 11 9 14 14 C 1.54326 * 110.71526 * 273.54922 * 12 11 9 15 15 N 1.47022 * 107.26818 * 219.44139 * 14 12 11 16 16 C 1.36937 * 125.65285 * 178.90788 * 15 14 12 17 17 H 1.08005 * 119.99553 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00334 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00097 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99895 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47191 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47193 * 120.00262 * 20 18 16 23 23 H 1.48504 * 109.46776 * 239.99968 * 20 18 16 24 24 C 1.47426 * 108.70443 * 358.94052 * 15 14 12 25 25 C 1.54909 * 104.82874 * 24.13062 * 24 15 14 26 26 H 1.09005 * 111.00391 * 204.91304 * 25 24 15 27 27 O 1.42898 * 111.00685 * 81.06529 * 25 24 15 28 28 C 1.47026 * 125.64547 * 180.02562 * 4 2 1 29 29 H 1.08995 * 109.47415 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.46564 * 120.00303 * 1 2 3 31 31 H 1.08998 * 109.47012 * 239.99357 * 1 2 3 32 32 H 1.08994 * 110.37063 * 274.75060 * 5 4 2 33 33 H 1.09008 * 110.36295 * 37.07780 * 5 4 2 34 34 H 1.08997 * 111.19644 * 279.19709 * 6 5 4 35 35 H 1.09006 * 110.93888 * 155.28982 * 6 5 4 36 36 H 0.97003 * 120.00033 * 0.02562 * 11 9 7 37 37 H 1.09000 * 109.88925 * 338.85484 * 14 12 11 38 38 H 1.08999 * 109.88062 * 100.03037 * 14 12 11 39 39 H 0.97003 * 119.99991 * 179.97438 * 19 18 16 40 40 H 1.08999 * 110.36888 * 142.96326 * 24 15 14 41 41 H 1.08994 * 110.37082 * 265.29011 * 24 15 14 42 42 H 0.96703 * 113.99936 * 67.79905 * 27 25 24 43 43 H 1.08999 * 109.88342 * 300.43339 * 28 4 2 44 44 H 1.08999 * 109.88254 * 61.60387 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0056 5 6 1.5731 -2.5102 0.0185 6 6 2.6546 -3.4382 -0.5943 7 6 3.9550 -2.8232 -0.0127 8 1 4.1383 -3.1919 0.9965 9 6 5.1303 -3.1145 -0.9100 10 8 4.9903 -3.8295 -1.8797 11 7 6.3367 -2.5805 -0.6350 12 6 7.4791 -2.8632 -1.5076 13 1 7.1630 -2.9156 -2.5495 14 6 8.1797 -4.1711 -1.0831 15 7 9.6275 -3.9548 -1.2197 16 6 10.6027 -4.8687 -0.9212 17 1 10.3315 -5.8460 -0.5500 18 6 11.9397 -4.5390 -1.0958 19 7 12.2703 -3.3478 -1.5477 20 14 13.2700 -5.7855 -0.6879 21 1 12.6410 -7.0388 -0.1996 22 1 14.0685 -6.0738 -1.9064 23 1 14.1581 -5.2342 0.3669 24 6 9.8557 -2.5908 -1.7304 25 6 8.5904 -1.7969 -1.3198 26 1 8.4311 -0.9459 -1.9821 27 8 8.6703 -1.3748 0.0430 28 6 3.6441 -1.3117 0.0068 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3632 -0.5139 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 1.3445 -2.8133 1.0402 33 1 0.6710 -2.5242 -0.5933 34 1 2.6496 -3.3840 -1.6829 35 1 2.5232 -4.4660 -0.2558 36 1 6.4487 -2.0090 0.1407 37 1 7.9358 -4.4029 -0.0464 38 1 7.8642 -4.9881 -1.7320 39 1 13.2046 -3.1173 -1.6693 40 1 10.7424 -2.1563 -1.2689 41 1 9.9596 -2.6043 -2.8153 42 1 9.3511 -0.7085 0.2091 43 1 4.0644 -0.8355 -0.8790 44 1 4.0606 -0.8590 0.9066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084004094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:35 Heat of formation + Delta-G solvation = -85.118647 kcal Electronic energy + Delta-G solvation = -26381.734702 eV Core-core repulsion = 22528.042228 eV Total energy + Delta-G solvation = -3853.692475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64628 -39.51467 -38.09533 -37.06238 -34.74208 -34.03421 -32.51269 -31.62803 -30.15039 -29.35775 -28.34477 -26.91643 -24.68859 -24.04719 -22.47475 -20.66145 -20.13629 -19.72762 -19.63112 -17.73451 -17.26215 -17.14814 -16.69297 -16.22014 -15.68020 -15.34571 -14.97736 -14.80528 -14.45468 -14.07533 -13.88108 -13.64693 -13.14314 -13.05492 -12.99887 -12.97343 -12.71599 -12.54013 -12.35269 -11.99725 -11.81363 -11.60011 -11.34941 -11.20192 -11.08807 -10.88207 -10.62668 -10.36178 -10.20890 -10.04806 -9.86109 -9.72542 -9.24411 -8.99850 -8.75575 -8.69806 -6.86432 -5.70844 -3.10728 2.34057 2.54580 2.75470 3.28663 3.38287 3.44094 3.46509 4.00303 4.16093 4.45306 4.50695 4.54907 4.69491 4.82863 4.89173 4.92943 4.99039 5.04016 5.18175 5.32690 5.35837 5.43483 5.44847 5.47980 5.53299 5.64388 5.70987 5.86522 5.90560 5.92780 6.03192 6.26392 6.50644 6.68073 6.91262 7.16555 7.24417 7.55021 7.69197 7.76086 7.85015 8.10244 8.30038 8.37760 9.16758 9.77804 10.40967 11.34415 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.002774 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.490114 B =10091.483664 C =10637.397445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.524 3.476 3 O -0.545 6.545 4 N -0.620 5.620 5 C 0.098 3.902 6 C -0.112 4.112 7 C -0.124 4.124 8 H 0.113 0.887 9 C 0.520 3.480 10 O -0.539 6.539 11 N -0.704 5.704 12 C 0.142 3.858 13 H 0.099 0.901 14 C 0.133 3.867 15 N -0.597 5.597 16 C -0.216 4.216 17 H 0.079 0.921 18 C -0.013 4.013 19 N -0.927 5.927 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.127 3.873 25 C 0.067 3.933 26 H 0.059 0.941 27 O -0.561 6.561 28 C 0.118 3.882 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.408 0.592 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.252 0.748 40 H 0.115 0.885 41 H 0.022 0.978 42 H 0.380 0.620 43 H 0.074 0.926 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.178 4.849 4.403 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.314 3.686 3 O -0.422 6.422 4 N -0.356 5.356 5 C -0.025 4.025 6 C -0.150 4.150 7 C -0.146 4.146 8 H 0.131 0.869 9 C 0.305 3.695 10 O -0.416 6.416 11 N -0.355 5.355 12 C 0.037 3.963 13 H 0.117 0.883 14 C 0.006 3.994 15 N -0.323 5.323 16 C -0.344 4.344 17 H 0.096 0.904 18 C -0.208 4.208 19 N -0.576 5.576 20 Si 0.747 3.253 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.001 3.999 25 C 0.007 3.993 26 H 0.077 0.923 27 O -0.367 6.367 28 C -0.005 4.005 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.244 0.756 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.133 0.867 41 H 0.040 0.960 42 H 0.228 0.772 43 H 0.093 0.907 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.254 4.520 3.764 23.019 hybrid contribution 1.301 -0.122 0.471 1.389 sum -20.953 4.398 4.235 21.824 Atomic orbital electron populations 1.21896 0.91208 1.05481 1.04215 1.20537 0.90436 0.81918 0.75737 1.90751 1.70849 1.30659 1.49914 1.48551 1.07052 1.06205 1.73777 1.22501 0.97213 0.81510 1.01297 1.22736 0.90941 0.98983 1.02378 1.22430 0.94805 0.96171 1.01178 0.86894 1.20152 0.83744 0.80075 0.85562 1.90712 1.84511 1.37459 1.28945 1.45882 1.08275 1.50721 1.30645 1.22167 0.83853 0.95839 0.94484 0.88274 1.21582 0.85739 0.94007 0.98119 1.44302 0.99145 1.12229 1.76648 1.19142 0.85387 0.93923 1.35931 0.90362 1.24764 0.97001 0.97377 1.01663 1.69730 1.16070 1.19394 1.52422 0.85959 0.81709 0.80077 0.77532 1.20522 1.21746 1.21747 1.22601 0.95213 0.85121 0.96944 1.23568 0.97451 0.95142 0.83143 0.92342 1.86227 1.60384 1.63163 1.26947 1.21822 0.81168 0.94351 1.03200 0.88899 0.89365 0.89391 0.90773 0.89998 0.88961 0.88979 0.75583 0.95308 0.95416 0.93758 0.86699 0.95967 0.77233 0.90746 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 9.32 36.01 0.34 -0.64 16 2 C 0.52 5.53 7.96 -10.98 -0.09 5.45 16 3 O -0.54 -8.29 17.41 5.56 0.10 -8.20 16 4 N -0.62 -5.79 3.32 -170.38 -0.57 -6.35 16 5 C 0.10 0.60 6.70 -2.41 -0.02 0.58 16 6 C -0.11 -0.92 6.15 -24.46 -0.15 -1.07 16 7 C -0.12 -1.22 3.34 -89.93 -0.30 -1.52 16 8 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 9 C 0.52 7.41 7.02 -10.98 -0.08 7.33 16 10 O -0.54 -9.59 15.49 5.55 0.09 -9.50 16 11 N -0.70 -10.52 5.03 -52.03 -0.26 -10.78 16 12 C 0.14 2.59 3.12 -66.10 -0.21 2.38 16 13 H 0.10 1.86 7.69 -51.93 -0.40 1.46 16 14 C 0.13 2.92 6.99 -3.06 -0.02 2.90 16 15 N -0.60 -15.33 3.39 -170.07 -0.58 -15.91 16 16 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 17 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 18 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 19 N -0.93 -26.48 10.09 55.49 0.56 -25.92 16 20 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C 0.13 2.96 5.62 -2.53 -0.01 2.95 16 25 C 0.07 1.22 4.28 -24.59 -0.11 1.11 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 O -0.56 -9.44 12.23 -35.23 -0.43 -9.88 16 28 C 0.12 1.21 6.40 -3.06 -0.02 1.19 16 29 H 0.09 0.55 8.12 -51.93 -0.42 0.12 16 30 H 0.09 0.36 7.87 -51.93 -0.41 -0.04 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.35 7.49 -51.92 -0.39 -0.04 16 34 H 0.09 0.93 7.49 -51.93 -0.39 0.55 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.41 5.54 7.56 -40.82 -0.31 5.23 16 37 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.12 2.97 5.87 -51.93 -0.31 2.66 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.38 5.19 9.12 45.56 0.42 5.61 16 43 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -35.52 358.82 -7.58 -43.10 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.96 Total: 6.98 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -0.91 Total: 14.00 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.85 Total: -58.97 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.25 Total: -27.57 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.52 -7.58 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084004094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.018 kcal (2) G-P(sol) polarization free energy of solvation -35.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds