Wall clock time and date at job start Tue Mar 31 2020 05:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 240.00502 * 2 1 3 5 5 C 1.53000 * 109.47152 * 174.99646 * 4 2 1 6 6 H 1.08992 * 109.47292 * 304.99768 * 5 4 2 7 7 C 1.52999 * 109.47119 * 184.99675 * 5 4 2 8 8 N 1.46503 * 109.47282 * 64.99850 * 5 4 2 9 9 C 1.36932 * 120.00498 * 205.00142 * 8 5 4 10 10 H 1.08007 * 119.99958 * 359.97438 * 9 8 5 11 11 C 1.38813 * 120.00378 * 179.97438 * 9 8 5 12 12 N 1.31614 * 120.00016 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99908 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47208 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46614 * 120.00089 * 13 11 9 16 16 H 1.48498 * 109.46903 * 239.99965 * 13 11 9 17 17 N 1.46496 * 109.47519 * 119.99796 * 2 1 3 18 18 C 1.34777 * 120.00266 * 275.00721 * 17 2 1 19 19 O 1.21274 * 120.00135 * 0.27234 * 18 17 2 20 20 C 1.50706 * 119.99766 * 179.97438 * 18 17 2 21 21 N 1.46500 * 109.46949 * 179.97438 * 20 18 17 22 22 C 1.33877 * 122.76337 * 269.71437 * 21 20 18 23 23 O 1.21227 * 125.39310 * 359.97434 * 22 21 20 24 24 C 1.51316 * 109.20887 * 179.84133 * 22 21 20 25 25 C 1.54229 * 103.55233 * 0.38232 * 24 22 21 26 26 C 1.33881 * 122.76424 * 89.99780 * 21 20 18 27 27 O 1.21221 * 125.39081 * 359.97438 * 26 21 20 28 28 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 30 30 H 1.08992 * 109.47302 * 59.99796 * 1 2 3 31 31 H 1.09003 * 109.47048 * 294.99635 * 4 2 1 32 32 H 1.08994 * 109.47690 * 54.99455 * 4 2 1 33 33 H 1.08996 * 109.47467 * 59.99990 * 7 5 4 34 34 H 1.09003 * 109.47230 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.47416 * 300.00161 * 7 5 4 36 36 H 0.97006 * 119.99697 * 25.00205 * 8 5 4 37 37 H 0.96999 * 120.00027 * 179.97438 * 12 11 9 38 38 H 0.96999 * 119.99691 * 94.99706 * 17 2 1 39 39 H 1.09000 * 109.47161 * 299.99737 * 20 18 17 40 40 H 1.09001 * 109.46740 * 59.99879 * 20 18 17 41 41 H 1.08995 * 110.79496 * 241.77659 * 24 22 21 42 42 H 1.08999 * 110.41314 * 118.80886 * 24 22 21 43 43 H 1.09002 * 110.60792 * 241.25899 * 25 24 22 44 44 H 1.09000 * 110.60441 * 118.29563 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 1 3.8570 0.4360 -1.2678 7 6 4.0645 -1.2247 -2.6241 8 7 4.1538 -1.3340 -0.1825 9 6 5.3944 -0.9854 0.2806 10 1 5.9389 -0.1791 -0.1884 11 6 5.9522 -1.6681 1.3528 12 7 5.2888 -2.6509 1.9240 13 14 7.6449 -1.1929 1.9840 14 1 8.1760 -0.0658 1.1761 15 1 7.5441 -0.7776 3.4061 16 1 8.5597 -2.3572 1.8719 17 7 2.0184 -0.6905 1.1961 18 6 2.1471 -0.0182 2.3571 19 8 1.8538 1.1572 2.4129 20 6 2.6490 -0.7288 3.5877 21 7 2.6988 0.2126 4.7090 22 6 3.7829 0.9453 4.9922 23 8 4.8267 0.9221 4.3760 24 6 3.4980 1.8094 6.2013 25 6 2.0492 1.4378 6.5776 26 6 1.6659 0.4071 5.5383 27 8 0.5935 -0.1535 5.4674 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7517 -1.7714 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 3.6264 -0.6885 -3.4658 34 1 5.1509 -1.1482 -2.6698 35 1 3.7723 -2.2739 -2.6701 36 1 3.6648 -2.0584 0.2385 37 1 5.6788 -3.1282 2.6730 38 1 2.2491 -1.6317 1.1525 39 1 1.9761 -1.5507 3.8325 40 1 3.6481 -1.1213 3.3985 41 1 3.5690 2.8668 5.9466 42 1 4.1808 1.5628 7.0143 43 1 1.3995 2.3105 6.5102 44 1 2.0113 1.0065 7.5779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146194708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:47 Heat of formation + Delta-G solvation = -86.291875 kcal Electronic energy + Delta-G solvation = -27838.706689 eV Core-core repulsion = 23984.963340 eV Total energy + Delta-G solvation = -3853.743350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66099 -39.15881 -38.28341 -36.80220 -35.53879 -34.18898 -33.23014 -32.24948 -30.70615 -28.59979 -27.35271 -26.30088 -26.05266 -23.63519 -22.17624 -21.71090 -20.26353 -19.90936 -19.04525 -17.36971 -17.16950 -17.01251 -16.22578 -16.08165 -15.61637 -14.84931 -14.52914 -14.34121 -13.98343 -13.90807 -13.80880 -13.73689 -13.56295 -13.13197 -12.92229 -12.76760 -12.63755 -12.17057 -11.97091 -11.74017 -11.66558 -11.57670 -11.37303 -10.96365 -10.77825 -10.70647 -10.45980 -10.35942 -10.18580 -10.05913 -9.86301 -9.79074 -9.65064 -9.01370 -8.93085 -8.38933 -6.93135 -5.79318 -3.04777 1.74960 2.61800 2.96292 3.24266 3.49720 3.56907 3.60874 3.87099 4.15980 4.31997 4.49000 4.65313 4.82618 5.07966 5.28796 5.36833 5.42980 5.49502 5.52146 5.55772 5.58266 5.58817 5.69301 5.71392 5.89544 5.97314 6.01858 6.04556 6.14706 6.25395 6.37155 6.42148 6.56216 6.61029 6.86576 7.05825 7.07596 7.15259 7.54655 7.74080 7.98334 8.14836 8.40416 8.81942 9.53388 10.05402 10.41214 11.43291 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.006692 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.380575 B = 4183.097025 C = 6074.377394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.082 0.918 4 C -0.133 4.133 5 C 0.169 3.831 6 H 0.047 0.953 7 C -0.163 4.163 8 N -0.717 5.717 9 C -0.224 4.224 10 H 0.067 0.933 11 C -0.007 4.007 12 N -0.938 5.938 13 Si 0.900 3.100 14 H -0.284 1.284 15 H -0.286 1.286 16 H -0.296 1.296 17 N -0.691 5.691 18 C 0.523 3.477 19 O -0.560 6.560 20 C 0.075 3.925 21 N -0.553 5.553 22 C 0.521 3.479 23 O -0.457 6.457 24 C -0.154 4.154 25 C -0.154 4.154 26 C 0.531 3.469 27 O -0.492 6.492 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.377 0.623 37 H 0.252 0.748 38 H 0.406 0.594 39 H 0.112 0.888 40 H 0.150 0.850 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.771 5.144 5.054 11.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 H 0.100 0.900 4 C -0.172 4.172 5 C 0.059 3.941 6 H 0.065 0.935 7 C -0.223 4.223 8 N -0.360 5.360 9 C -0.356 4.356 10 H 0.085 0.915 11 C -0.202 4.202 12 N -0.588 5.588 13 Si 0.731 3.269 14 H -0.209 1.209 15 H -0.213 1.213 16 H -0.224 1.224 17 N -0.344 5.344 18 C 0.308 3.692 19 O -0.439 6.439 20 C -0.050 4.050 21 N -0.295 5.295 22 C 0.308 3.692 23 O -0.326 6.326 24 C -0.194 4.194 25 C -0.193 4.193 26 C 0.320 3.680 27 O -0.364 6.364 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.212 0.788 37 H 0.062 0.938 38 H 0.244 0.756 39 H 0.130 0.870 40 H 0.167 0.833 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.794 5.727 4.707 11.502 hybrid contribution 1.049 -0.574 0.311 1.235 sum -7.745 5.153 5.019 10.570 Atomic orbital electron populations 1.22199 0.96230 1.01687 1.01896 1.20805 0.92474 0.97662 0.84436 0.90015 1.22207 0.97826 1.00634 0.96498 1.20285 0.89666 0.95891 0.88254 0.93478 1.22415 1.01537 1.00332 0.98026 1.42461 1.18747 1.39937 1.34844 1.19227 0.93147 1.12866 1.10311 0.91515 1.24520 0.98503 0.98420 0.98714 1.69592 1.38099 1.24844 1.26254 0.86212 0.84348 0.77072 0.79228 1.20941 1.21296 1.22409 1.45840 1.65602 1.14445 1.08487 1.20367 0.76699 0.87170 0.84983 1.90609 1.51602 1.16157 1.85561 1.21750 1.07949 0.91288 0.83980 1.46269 1.15817 1.39501 1.27963 1.20780 0.82711 0.79940 0.85754 1.90898 1.25383 1.63140 1.53146 1.22439 0.97189 1.02314 0.97476 1.22421 0.97201 0.99871 0.99851 1.20736 0.82839 0.82238 0.82214 1.90733 1.22471 1.50350 1.72873 0.92735 0.92486 0.92125 0.91661 0.90798 0.94618 0.92869 0.93597 0.78811 0.93793 0.75602 0.86990 0.83284 0.86332 0.86487 0.86378 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.48 37.16 0.35 -1.91 16 2 C 0.15 2.50 2.57 -67.94 -0.17 2.32 16 3 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 4 C -0.13 -2.02 4.43 -26.73 -0.12 -2.14 16 5 C 0.17 3.17 2.89 -67.93 -0.20 2.98 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 8 N -0.72 -16.21 3.84 -53.43 -0.21 -16.42 16 9 C -0.22 -5.93 9.93 -15.06 -0.15 -6.08 16 10 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 11 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 12 N -0.94 -25.30 12.78 55.49 0.71 -24.59 16 13 Si 0.90 22.88 29.55 -169.99 -5.02 17.86 16 14 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 16 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 17 N -0.69 -12.69 3.80 -53.81 -0.20 -12.89 16 18 C 0.52 10.66 7.86 -10.98 -0.09 10.57 16 19 O -0.56 -12.64 16.10 5.56 0.09 -12.55 16 20 C 0.07 1.42 6.04 -5.19 -0.03 1.39 16 21 N -0.55 -9.53 2.04 -116.62 -0.24 -9.77 16 22 C 0.52 8.88 8.08 -11.08 -0.09 8.79 16 23 O -0.46 -10.08 17.47 5.60 0.10 -9.98 16 24 C -0.15 -1.58 7.03 -26.94 -0.19 -1.76 16 25 C -0.15 -1.44 7.03 -26.94 -0.19 -1.63 16 26 C 0.53 8.00 8.08 -11.09 -0.09 7.91 16 27 O -0.49 -8.71 17.48 5.61 0.10 -8.61 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.38 8.66 5.71 -40.82 -0.23 8.42 16 37 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.41 7.44 6.51 -40.82 -0.27 7.17 16 39 H 0.11 1.90 7.83 -51.93 -0.41 1.50 16 40 H 0.15 3.28 7.54 -51.93 -0.39 2.89 16 41 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -33.69 369.87 -6.54 -40.23 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -6.73 Total: 13.47 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: -0.71 Total: 17.69 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: 0.06 Total: -63.68 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: 0.29 Total: -31.15 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.69 -6.54 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146194708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.066 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds