Wall clock time and date at job start Tue Mar 31 2020 05:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 240.00502 * 2 1 3 5 5 C 1.53000 * 109.47152 * 174.99646 * 4 2 1 6 6 H 1.08992 * 109.47292 * 304.99768 * 5 4 2 7 7 C 1.52999 * 109.47119 * 184.99675 * 5 4 2 8 8 N 1.46503 * 109.47282 * 64.99850 * 5 4 2 9 9 C 1.36932 * 120.00498 * 205.00142 * 8 5 4 10 10 H 1.08007 * 119.99958 * 359.97438 * 9 8 5 11 11 C 1.38813 * 120.00378 * 179.97438 * 9 8 5 12 12 N 1.31614 * 120.00016 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99908 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47208 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46614 * 120.00089 * 13 11 9 16 16 H 1.48498 * 109.46903 * 239.99965 * 13 11 9 17 17 N 1.46496 * 109.47519 * 119.99796 * 2 1 3 18 18 C 1.34777 * 120.00266 * 275.00721 * 17 2 1 19 19 O 1.21274 * 120.00135 * 0.27234 * 18 17 2 20 20 C 1.50706 * 119.99766 * 179.97438 * 18 17 2 21 21 N 1.46500 * 109.46949 * 179.97438 * 20 18 17 22 22 C 1.33877 * 122.76337 * 269.71437 * 21 20 18 23 23 O 1.21227 * 125.39310 * 359.97434 * 22 21 20 24 24 C 1.51316 * 109.20887 * 179.84133 * 22 21 20 25 25 C 1.54229 * 103.55233 * 0.38232 * 24 22 21 26 26 C 1.33881 * 122.76424 * 89.99780 * 21 20 18 27 27 O 1.21221 * 125.39081 * 359.97438 * 26 21 20 28 28 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 30 30 H 1.08992 * 109.47302 * 59.99796 * 1 2 3 31 31 H 1.09003 * 109.47048 * 294.99635 * 4 2 1 32 32 H 1.08994 * 109.47690 * 54.99455 * 4 2 1 33 33 H 1.08996 * 109.47467 * 59.99990 * 7 5 4 34 34 H 1.09003 * 109.47230 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.47416 * 300.00161 * 7 5 4 36 36 H 0.97006 * 119.99697 * 25.00205 * 8 5 4 37 37 H 0.96999 * 120.00027 * 179.97438 * 12 11 9 38 38 H 0.96999 * 119.99691 * 94.99706 * 17 2 1 39 39 H 1.09000 * 109.47161 * 299.99737 * 20 18 17 40 40 H 1.09001 * 109.46740 * 59.99879 * 20 18 17 41 41 H 1.08995 * 110.79496 * 241.77659 * 24 22 21 42 42 H 1.08999 * 110.41314 * 118.80886 * 24 22 21 43 43 H 1.09002 * 110.60792 * 241.25899 * 25 24 22 44 44 H 1.09000 * 110.60441 * 118.29563 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 1 3.8570 0.4360 -1.2678 7 6 4.0645 -1.2247 -2.6241 8 7 4.1538 -1.3340 -0.1825 9 6 5.3944 -0.9854 0.2806 10 1 5.9389 -0.1791 -0.1884 11 6 5.9522 -1.6681 1.3528 12 7 5.2888 -2.6509 1.9240 13 14 7.6449 -1.1929 1.9840 14 1 8.1760 -0.0658 1.1761 15 1 7.5441 -0.7776 3.4061 16 1 8.5597 -2.3572 1.8719 17 7 2.0184 -0.6905 1.1961 18 6 2.1471 -0.0182 2.3571 19 8 1.8538 1.1572 2.4129 20 6 2.6490 -0.7288 3.5877 21 7 2.6988 0.2126 4.7090 22 6 3.7829 0.9453 4.9922 23 8 4.8267 0.9221 4.3760 24 6 3.4980 1.8094 6.2013 25 6 2.0492 1.4378 6.5776 26 6 1.6659 0.4071 5.5383 27 8 0.5935 -0.1535 5.4674 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.7517 -1.7714 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 3.6264 -0.6885 -3.4658 34 1 5.1509 -1.1482 -2.6698 35 1 3.7723 -2.2739 -2.6701 36 1 3.6648 -2.0584 0.2385 37 1 5.6788 -3.1282 2.6730 38 1 2.2491 -1.6317 1.1525 39 1 1.9761 -1.5507 3.8325 40 1 3.6481 -1.1213 3.3985 41 1 3.5690 2.8668 5.9466 42 1 4.1808 1.5628 7.0143 43 1 1.3995 2.3105 6.5102 44 1 2.0113 1.0065 7.5779 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146194708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:47 Heat of formation + Delta-G solvation = -110.095365 kcal Electronic energy + Delta-G solvation = -27839.738886 eV Core-core repulsion = 23984.963340 eV Total energy + Delta-G solvation = -3854.775546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.91199 -40.68342 -39.63194 -38.36907 -36.89428 -35.84713 -34.43794 -34.00106 -32.21707 -30.34047 -28.70165 -27.61078 -27.10360 -25.60533 -23.28943 -23.10753 -21.76358 -21.39495 -20.39159 -19.16205 -18.71387 -18.36889 -17.50875 -17.42051 -17.00436 -16.64361 -16.08528 -15.74404 -15.54333 -15.42848 -15.26996 -15.03546 -14.93749 -14.45665 -14.29705 -14.24332 -13.65331 -13.54407 -13.43783 -13.33184 -13.07591 -12.92435 -12.81308 -12.63576 -12.33231 -12.16051 -12.11382 -11.78486 -11.71783 -11.65319 -11.52853 -11.42731 -11.08737 -10.91021 -10.55342 -9.93781 -8.85472 -7.90622 -5.11275 0.52250 1.36655 1.39598 1.48291 1.50295 1.62256 1.75952 2.44689 2.58805 3.22339 3.26371 3.45727 3.64799 3.67269 3.85852 4.00651 4.02491 4.14262 4.17800 4.33168 4.34125 4.42297 4.53581 4.64984 4.71306 4.80077 4.84536 4.88185 4.88934 4.89106 5.04372 5.10288 5.12654 5.32141 5.39223 5.57282 5.60702 5.69701 5.83464 6.33312 6.35244 6.54641 6.75224 7.24427 7.43606 8.14588 8.41580 9.30678 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.006692 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.380575 B = 4183.097025 C = 6074.377394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.146 3.854 3 H 0.053 0.947 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.026 0.974 7 C -0.153 4.153 8 N -0.719 5.719 9 C -0.222 4.222 10 H 0.052 0.948 11 C -0.045 4.045 12 N -0.943 5.943 13 Si 0.936 3.064 14 H -0.285 1.285 15 H -0.303 1.303 16 H -0.293 1.293 17 N -0.686 5.686 18 C 0.514 3.486 19 O -0.588 6.588 20 C 0.076 3.924 21 N -0.564 5.564 22 C 0.506 3.494 23 O -0.524 6.524 24 C -0.136 4.136 25 C -0.133 4.133 26 C 0.520 3.480 27 O -0.524 6.524 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.049 0.951 36 H 0.375 0.625 37 H 0.247 0.753 38 H 0.406 0.594 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.141 0.859 42 H 0.152 0.848 43 H 0.146 0.854 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.447 5.827 5.331 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.042 3.958 3 H 0.072 0.928 4 C -0.157 4.157 5 C 0.053 3.947 6 H 0.044 0.956 7 C -0.212 4.212 8 N -0.362 5.362 9 C -0.355 4.355 10 H 0.070 0.930 11 C -0.239 4.239 12 N -0.594 5.594 13 Si 0.769 3.231 14 H -0.211 1.211 15 H -0.232 1.232 16 H -0.220 1.220 17 N -0.337 5.337 18 C 0.300 3.700 19 O -0.470 6.470 20 C -0.049 4.049 21 N -0.306 5.306 22 C 0.297 3.703 23 O -0.397 6.397 24 C -0.175 4.175 25 C -0.172 4.172 26 C 0.312 3.688 27 O -0.399 6.399 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.210 0.790 37 H 0.056 0.944 38 H 0.244 0.756 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.159 0.841 42 H 0.170 0.830 43 H 0.164 0.836 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.500 6.414 4.959 13.265 hybrid contribution 1.534 -0.763 0.160 1.720 sum -8.966 5.651 5.119 11.770 Atomic orbital electron populations 1.22088 0.93693 1.02797 1.02216 1.20977 0.94381 0.96142 0.84286 0.92829 1.22125 0.94741 1.01681 0.97108 1.20507 0.92209 0.94296 0.87732 0.95596 1.22256 1.00049 1.00901 0.98034 1.42500 1.17637 1.40133 1.35962 1.19264 0.94420 1.11871 1.09901 0.92969 1.24882 1.00194 0.99267 0.99515 1.69637 1.38292 1.25195 1.26269 0.85622 0.82980 0.76740 0.77710 1.21068 1.23153 1.22030 1.45932 1.64760 1.14360 1.08666 1.20638 0.76542 0.86972 0.85854 1.90568 1.53123 1.17177 1.86103 1.21528 1.06070 0.92416 0.84920 1.46634 1.17074 1.39236 1.27656 1.22116 0.81450 0.79766 0.86918 1.90854 1.27737 1.65288 1.55851 1.22599 0.98420 1.01802 0.94724 1.22590 0.96432 0.98770 0.99371 1.21854 0.81714 0.82642 0.82548 1.90710 1.23555 1.51838 1.73791 0.91166 0.94654 0.89297 0.90249 0.87086 0.91150 0.95318 0.93158 0.79026 0.94352 0.75608 0.85792 0.86544 0.84099 0.83044 0.83640 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.48 71.98 0.68 -3.23 16 2 C 0.15 4.74 2.57 44.99 0.12 4.85 16 3 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 4 C -0.12 -3.31 4.43 30.59 0.14 -3.18 16 5 C 0.16 5.94 2.89 44.99 0.13 6.07 16 6 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 7 C -0.15 -5.01 9.49 71.98 0.68 -4.32 16 8 N -0.72 -32.97 3.84 -322.94 -1.24 -34.22 16 9 C -0.22 -12.08 9.93 84.03 0.83 -11.25 16 10 H 0.05 2.95 7.83 -2.91 -0.02 2.93 16 11 C -0.04 -2.50 5.50 84.86 0.47 -2.04 16 12 N -0.94 -52.32 12.78 21.65 0.28 -52.05 16 13 Si 0.94 48.51 29.55 68.60 2.03 50.53 16 14 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 15 H -0.30 -16.51 7.11 99.48 0.71 -15.80 16 16 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 17 N -0.69 -25.68 3.80 -442.55 -1.68 -27.36 16 18 C 0.51 21.81 7.86 87.66 0.69 22.50 16 19 O -0.59 -27.47 16.10 -3.01 -0.05 -27.52 16 20 C 0.08 3.06 6.04 85.63 0.52 3.57 16 21 N -0.56 -19.80 2.04 -760.72 -1.55 -21.35 16 22 C 0.51 17.45 8.08 87.99 0.71 18.16 16 23 O -0.52 -24.27 17.47 -2.87 -0.05 -24.32 16 24 C -0.14 -2.37 7.03 30.46 0.21 -2.16 16 25 C -0.13 -1.97 7.03 30.46 0.21 -1.76 16 26 C 0.52 15.15 8.08 87.99 0.71 15.86 16 27 O -0.52 -18.35 17.48 -2.85 -0.05 -18.40 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.38 17.41 5.71 -92.70 -0.53 16.88 16 37 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 38 H 0.41 15.17 6.51 -92.71 -0.60 14.56 16 39 H 0.12 4.45 7.83 -2.39 -0.02 4.44 16 40 H 0.12 5.50 7.54 -2.39 -0.02 5.48 16 41 H 0.14 1.93 8.14 -2.39 -0.02 1.92 16 42 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.16 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -79.34 369.87 3.67 -75.67 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: -0.11 Total: 35.95 kcal Atomic # 6 Polarization: 36.98 SS G_CDS: 6.10 Total: 43.08 kcal Atomic # 7 Polarization: -130.78 SS G_CDS: -4.20 Total: -134.98 kcal Atomic # 8 Polarization: -70.10 SS G_CDS: -0.15 Total: -70.25 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.53 kcal Total: -79.34 3.67 -75.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146194708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.429 kcal (2) G-P(sol) polarization free energy of solvation -79.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds