Wall clock time and date at job start Tue Mar 31 2020 05:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46910 * 2 1 4 4 O 1.21288 * 120.00095 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00374 * 179.97438 * 3 2 1 6 6 C 1.47026 * 125.64203 * 0.02595 * 5 3 2 7 7 C 1.54321 * 107.26791 * 181.03648 * 6 5 3 8 8 C 1.55448 * 102.96961 * 22.19024 * 7 6 5 9 9 H 1.09004 * 111.00873 * 82.52495 * 8 7 6 10 10 N 1.46502 * 111.11836 * 206.45988 * 8 7 6 11 11 C 1.34767 * 120.00359 * 267.10519 * 10 8 7 12 12 O 1.21351 * 120.00357 * 0.02562 * 11 10 8 13 13 C 1.49446 * 120.00224 * 179.97438 * 11 10 8 14 14 O 1.21347 * 119.99870 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00388 * 180.02562 * 13 11 10 16 16 C 1.46502 * 120.00523 * 180.02562 * 15 13 11 17 17 C 1.52992 * 109.47525 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47521 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99676 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00491 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99818 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47307 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47072 * 119.99959 * 22 20 18 25 25 H 1.48500 * 109.47380 * 240.00107 * 22 20 18 26 26 C 1.47419 * 125.65221 * 179.97438 * 5 3 2 27 27 H 1.09000 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47638 * 300.00252 * 1 2 3 29 29 H 1.09007 * 109.47282 * 60.00253 * 1 2 3 30 30 H 1.09001 * 109.47570 * 240.00173 * 2 1 3 31 31 H 1.08995 * 109.47270 * 119.99383 * 2 1 3 32 32 H 1.08998 * 109.88266 * 300.45023 * 6 5 3 33 33 H 1.09000 * 109.88221 * 61.61840 * 6 5 3 34 34 H 1.08998 * 110.71927 * 140.55469 * 7 6 5 35 35 H 1.08998 * 110.72073 * 263.64892 * 7 6 5 36 36 H 0.97001 * 119.99399 * 87.10479 * 10 8 7 37 37 H 0.97001 * 120.00077 * 0.02562 * 15 13 11 38 38 H 1.09007 * 109.46671 * 300.00459 * 16 15 13 39 39 H 1.09002 * 109.47028 * 59.99753 * 16 15 13 40 40 H 1.08993 * 109.47273 * 300.00367 * 17 16 15 41 41 H 1.09002 * 109.46999 * 59.99944 * 17 16 15 42 42 H 0.96993 * 119.99587 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.36926 * 274.73432 * 26 5 3 44 44 H 1.08995 * 110.36556 * 36.94716 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6673 0.0005 6 6 4.4181 0.6492 0.0006 7 6 5.7689 1.3950 0.0279 8 6 5.3888 2.7838 0.6138 9 1 5.3390 2.7485 1.7021 10 7 6.3236 3.8193 0.1663 11 6 7.3974 4.1288 0.9194 12 8 7.5904 3.5495 1.9681 13 6 8.3513 5.1846 0.4626 14 8 8.1592 5.7630 -0.5867 15 7 9.4255 5.4938 1.2156 16 6 10.3603 6.5293 0.7681 17 6 11.4815 6.6836 1.7975 18 6 12.4435 7.7483 1.3369 19 1 12.2720 8.2637 0.4034 20 6 13.5425 8.0645 2.1071 21 7 13.7516 7.4366 3.2436 22 14 14.7343 9.3847 1.5364 23 1 14.2770 9.9356 0.2354 24 1 14.7857 10.4743 2.5441 25 1 16.0875 8.7943 1.3763 26 6 3.9831 3.0020 0.0001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 4.3256 0.0175 0.8840 33 1 4.3485 0.0412 -0.9014 34 1 6.4787 0.8836 0.6781 35 1 6.1740 1.4962 -0.9789 36 1 6.1695 4.2821 -0.6722 37 1 9.5798 5.0307 2.0539 38 1 10.7863 6.2431 -0.1936 39 1 9.8307 7.4762 0.6635 40 1 11.0552 6.9699 2.7589 41 1 12.0112 5.7368 1.9025 42 1 14.5245 7.6593 3.7856 43 1 4.0683 3.3808 -1.0185 44 1 3.4044 3.6925 0.6135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261124080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:19 Heat of formation + Delta-G solvation = -116.801123 kcal Electronic energy + Delta-G solvation = -24788.971457 eV Core-core repulsion = 20933.905127 eV Total energy + Delta-G solvation = -3855.066330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 5.84 seconds Orbital eigenvalues (eV) -40.89948 -40.20560 -38.62340 -37.70023 -35.37635 -34.46584 -33.21997 -32.87481 -31.10202 -29.86881 -29.29587 -26.08210 -25.12255 -23.63989 -23.20059 -21.47460 -21.07204 -20.40649 -19.55693 -18.44159 -17.66193 -17.37684 -16.64523 -16.20910 -15.85451 -15.78457 -15.48212 -14.90527 -14.76374 -14.48405 -14.44065 -14.00908 -13.89440 -13.53599 -13.35735 -13.00551 -12.88041 -12.73167 -12.46144 -12.35104 -12.10471 -12.06855 -11.64200 -11.60890 -11.33994 -11.25825 -11.09896 -10.67314 -10.44154 -10.28231 -9.84407 -9.54452 -9.49493 -9.24154 -9.16284 -8.74917 -8.44871 -6.12709 -4.16386 1.49811 2.12923 2.22071 2.66848 3.26389 3.31215 3.34198 3.38596 3.74090 3.85156 4.05901 4.28733 4.38010 4.45215 4.59492 4.62516 4.63384 4.68541 4.75356 4.95945 5.12305 5.24428 5.24739 5.29213 5.34829 5.47529 5.51050 5.53806 5.67602 5.81409 6.00766 6.13716 6.19896 6.54011 6.64818 6.89862 6.99884 7.41800 7.54451 7.57741 7.71395 7.82887 7.84637 8.16390 8.28637 8.89451 9.48805 10.98791 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.051611 B = 0.001837 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.394315 B =15236.055345 C =15435.021937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.528 3.472 4 O -0.537 6.537 5 N -0.620 5.620 6 C 0.102 3.898 7 C -0.146 4.146 8 C 0.131 3.869 9 H 0.112 0.888 10 N -0.697 5.697 11 C 0.513 3.487 12 O -0.516 6.516 13 C 0.498 3.502 14 O -0.532 6.532 15 N -0.685 5.685 16 C 0.118 3.882 17 C 0.010 3.990 18 C -0.523 4.523 19 H 0.061 0.939 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.100 3.900 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.415 0.585 37 H 0.411 0.589 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.262 0.738 43 H 0.077 0.923 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.934 -18.061 -6.580 29.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.317 3.683 4 O -0.413 6.413 5 N -0.356 5.356 6 C -0.021 4.021 7 C -0.185 4.185 8 C 0.025 3.975 9 H 0.130 0.870 10 N -0.352 5.352 11 C 0.294 3.706 12 O -0.390 6.390 13 C 0.277 3.723 14 O -0.410 6.410 15 N -0.336 5.336 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.562 4.562 19 H 0.079 0.921 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.024 4.024 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.252 0.748 37 H 0.246 0.754 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.294 -17.574 -6.409 29.103 hybrid contribution 0.895 0.611 -0.214 1.105 sum -21.399 -16.963 -6.623 28.099 Atomic orbital electron populations 1.21551 0.92819 1.01750 1.03474 1.21616 0.98644 0.93181 1.04414 1.20554 0.80002 0.92153 0.75569 1.90735 1.54207 1.46777 1.49602 1.48419 1.05368 1.07622 1.74203 1.22082 0.86204 0.91365 1.02430 1.23163 0.96508 0.95644 1.03231 1.22168 0.87391 0.86948 1.00956 0.86977 1.45531 1.24535 1.39435 1.25657 1.20501 0.82240 0.83635 0.84181 1.90765 1.73589 1.52069 1.22600 1.19891 0.83098 0.84042 0.85293 1.90742 1.74472 1.52795 1.22976 1.46244 1.23636 1.39254 1.24421 1.21954 0.90043 0.88313 1.00002 1.19366 0.91592 0.98145 0.93631 1.21049 1.08070 1.20266 1.06821 0.92095 1.25002 0.97871 0.96565 0.94841 1.69967 1.28810 1.41582 1.12674 0.86439 0.80742 0.81434 0.78834 1.19578 1.20918 1.20919 1.22342 0.92347 0.85815 1.01846 0.91902 0.91889 0.91935 0.88859 0.88788 0.90651 0.90697 0.88846 0.89613 0.74786 0.75357 0.91793 0.91795 0.95630 0.95637 0.92816 0.90530 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.20 37.16 0.34 -0.46 16 2 C -0.14 -0.72 5.61 -27.88 -0.16 -0.88 16 3 C 0.53 4.70 7.85 -10.98 -0.09 4.62 16 4 O -0.54 -7.00 16.24 5.55 0.09 -6.91 16 5 N -0.62 -4.62 3.33 -170.51 -0.57 -5.18 16 6 C 0.10 0.49 6.49 -3.06 -0.02 0.47 16 7 C -0.15 -0.89 6.66 -24.74 -0.16 -1.05 16 8 C 0.13 1.07 3.44 -65.61 -0.23 0.84 16 9 H 0.11 1.05 7.54 -51.93 -0.39 0.66 16 10 N -0.70 -6.96 5.20 -52.00 -0.27 -7.23 16 11 C 0.51 6.96 7.89 -11.59 -0.09 6.87 16 12 O -0.52 -7.92 16.12 5.50 0.09 -7.83 16 13 C 0.50 8.06 7.89 -11.59 -0.09 7.97 16 14 O -0.53 -9.57 16.48 5.50 0.09 -9.48 16 15 N -0.68 -11.94 5.55 -60.73 -0.34 -12.28 16 16 C 0.12 2.41 5.61 -4.04 -0.02 2.38 16 17 C 0.01 0.25 5.09 -27.89 -0.14 0.10 16 18 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 22 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.10 0.79 6.54 -2.52 -0.02 0.77 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.06 0.43 8.10 -51.92 -0.42 0.01 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.42 3.73 8.04 -40.82 -0.33 3.40 16 37 H 0.41 6.81 7.94 -40.82 -0.32 6.48 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 43 H 0.08 0.56 8.00 -51.93 -0.42 0.14 16 44 H 0.09 0.81 8.03 -51.93 -0.42 0.40 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -33.41 375.26 -7.53 -40.94 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.91 Total: 2.70 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.09 Total: 8.66 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.44 Total: -49.77 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.27 Total: -24.22 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.41 -7.53 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261124080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.856 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.85 seconds