Wall clock time and date at job start Tue Mar 31 2020 05:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46910 * 2 1 4 4 O 1.21288 * 120.00095 * 359.97438 * 3 2 1 5 5 N 1.34781 * 120.00374 * 179.97438 * 3 2 1 6 6 C 1.47026 * 125.64203 * 0.02595 * 5 3 2 7 7 C 1.54321 * 107.26791 * 181.03648 * 6 5 3 8 8 C 1.55448 * 102.96961 * 22.19024 * 7 6 5 9 9 H 1.09004 * 111.00873 * 82.52495 * 8 7 6 10 10 N 1.46502 * 111.11836 * 206.45988 * 8 7 6 11 11 C 1.34767 * 120.00359 * 267.10519 * 10 8 7 12 12 O 1.21351 * 120.00357 * 0.02562 * 11 10 8 13 13 C 1.49446 * 120.00224 * 179.97438 * 11 10 8 14 14 O 1.21347 * 119.99870 * 359.97438 * 13 11 10 15 15 N 1.34776 * 120.00388 * 180.02562 * 13 11 10 16 16 C 1.46502 * 120.00523 * 180.02562 * 15 13 11 17 17 C 1.52992 * 109.47525 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47521 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99676 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00491 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99818 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47307 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47072 * 119.99959 * 22 20 18 25 25 H 1.48500 * 109.47380 * 240.00107 * 22 20 18 26 26 C 1.47419 * 125.65221 * 179.97438 * 5 3 2 27 27 H 1.09000 * 109.47110 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47638 * 300.00252 * 1 2 3 29 29 H 1.09007 * 109.47282 * 60.00253 * 1 2 3 30 30 H 1.09001 * 109.47570 * 240.00173 * 2 1 3 31 31 H 1.08995 * 109.47270 * 119.99383 * 2 1 3 32 32 H 1.08998 * 109.88266 * 300.45023 * 6 5 3 33 33 H 1.09000 * 109.88221 * 61.61840 * 6 5 3 34 34 H 1.08998 * 110.71927 * 140.55469 * 7 6 5 35 35 H 1.08998 * 110.72073 * 263.64892 * 7 6 5 36 36 H 0.97001 * 119.99399 * 87.10479 * 10 8 7 37 37 H 0.97001 * 120.00077 * 0.02562 * 15 13 11 38 38 H 1.09007 * 109.46671 * 300.00459 * 16 15 13 39 39 H 1.09002 * 109.47028 * 59.99753 * 16 15 13 40 40 H 1.08993 * 109.47273 * 300.00367 * 17 16 15 41 41 H 1.09002 * 109.46999 * 59.99944 * 17 16 15 42 42 H 0.96993 * 119.99587 * 180.02562 * 21 20 18 43 43 H 1.09002 * 110.36926 * 274.73432 * 26 5 3 44 44 H 1.08995 * 110.36556 * 36.94716 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 -0.0005 5 7 3.3574 1.6673 0.0005 6 6 4.4181 0.6492 0.0006 7 6 5.7689 1.3950 0.0279 8 6 5.3888 2.7838 0.6138 9 1 5.3390 2.7485 1.7021 10 7 6.3236 3.8193 0.1663 11 6 7.3974 4.1288 0.9194 12 8 7.5904 3.5495 1.9681 13 6 8.3513 5.1846 0.4626 14 8 8.1592 5.7630 -0.5867 15 7 9.4255 5.4938 1.2156 16 6 10.3603 6.5293 0.7681 17 6 11.4815 6.6836 1.7975 18 6 12.4435 7.7483 1.3369 19 1 12.2720 8.2637 0.4034 20 6 13.5425 8.0645 2.1071 21 7 13.7516 7.4366 3.2436 22 14 14.7343 9.3847 1.5364 23 1 14.2770 9.9356 0.2354 24 1 14.7857 10.4743 2.5441 25 1 16.0875 8.7943 1.3763 26 6 3.9831 3.0020 0.0001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 4.3256 0.0175 0.8840 33 1 4.3485 0.0412 -0.9014 34 1 6.4787 0.8836 0.6781 35 1 6.1740 1.4962 -0.9789 36 1 6.1695 4.2821 -0.6722 37 1 9.5798 5.0307 2.0539 38 1 10.7863 6.2431 -0.1936 39 1 9.8307 7.4762 0.6635 40 1 11.0552 6.9699 2.7589 41 1 12.0112 5.7368 1.9025 42 1 14.5245 7.6593 3.7856 43 1 4.0683 3.3808 -1.0185 44 1 3.4044 3.6925 0.6135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261124080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:11 Heat of formation + Delta-G solvation = -142.001585 kcal Electronic energy + Delta-G solvation = -24790.064231 eV Core-core repulsion = 20933.905127 eV Total energy + Delta-G solvation = -3856.159104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 6.29 seconds Orbital eigenvalues (eV) -41.88028 -41.07576 -39.76328 -38.55239 -36.87543 -35.53567 -34.77358 -33.71898 -31.79114 -31.64392 -29.94238 -27.51853 -26.14984 -24.89530 -23.70136 -22.91400 -22.13430 -21.58185 -20.14121 -19.66224 -18.60663 -18.32003 -18.12822 -17.32957 -17.08181 -16.57626 -16.51624 -16.35410 -16.05924 -15.74426 -15.41669 -14.92314 -14.73404 -14.51947 -14.37138 -14.31275 -13.93789 -13.55950 -13.25186 -13.14734 -13.06408 -12.96044 -12.89533 -12.66717 -12.58110 -12.51222 -12.29348 -12.06914 -11.86888 -11.68666 -11.41722 -10.98888 -10.73728 -10.62091 -10.41770 -10.20386 -9.76351 -8.23575 -6.34504 0.28509 1.16163 1.42532 1.43905 1.56599 1.57825 1.92631 2.08507 2.40232 2.67521 3.11689 3.22897 3.39090 3.50492 3.75965 3.90219 4.10282 4.19230 4.21051 4.28104 4.38936 4.45545 4.52947 4.65971 4.68322 4.78623 4.81765 4.93559 4.96357 5.01037 5.06490 5.07434 5.10134 5.25171 5.36691 5.42853 5.55334 5.75391 5.88153 6.13164 6.32245 6.41627 6.66817 6.79585 6.90525 7.08466 7.35204 8.88566 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.051611 B = 0.001837 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.394315 B =15236.055345 C =15435.021937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.519 3.481 4 O -0.590 6.590 5 N -0.619 5.619 6 C 0.103 3.897 7 C -0.140 4.140 8 C 0.131 3.869 9 H 0.101 0.899 10 N -0.679 5.679 11 C 0.522 3.478 12 O -0.535 6.535 13 C 0.500 3.500 14 O -0.548 6.548 15 N -0.688 5.688 16 C 0.138 3.862 17 C 0.017 3.983 18 C -0.544 4.544 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.967 3.033 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.278 1.278 26 C 0.101 3.899 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.422 0.578 37 H 0.415 0.585 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.008 0.992 41 H 0.009 0.991 42 H 0.265 0.735 43 H 0.084 0.916 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.108 -19.554 -7.746 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.310 3.690 4 O -0.470 6.470 5 N -0.354 5.354 6 C -0.018 4.018 7 C -0.179 4.179 8 C 0.025 3.975 9 H 0.119 0.881 10 N -0.332 5.332 11 C 0.303 3.697 12 O -0.411 6.411 13 C 0.281 3.719 14 O -0.427 6.427 15 N -0.339 5.339 16 C 0.015 3.985 17 C -0.020 4.020 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.193 4.193 21 N -0.567 5.567 22 Si 0.792 3.208 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.204 1.204 26 C -0.023 4.023 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.260 0.740 37 H 0.251 0.749 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.026 0.974 41 H 0.028 0.972 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.484 -19.106 -7.602 30.469 hybrid contribution 0.892 1.047 0.136 1.382 sum -21.593 -18.059 -7.466 29.122 Atomic orbital electron populations 1.21558 0.93635 1.02715 1.01767 1.21685 0.97868 0.90799 1.06703 1.21322 0.79906 0.93240 0.74521 1.90711 1.55569 1.48580 1.52184 1.48517 1.05664 1.07946 1.73256 1.22283 0.84176 0.90715 1.04675 1.23145 0.97474 0.93900 1.03378 1.22251 0.87063 0.87654 1.00504 0.88066 1.45461 1.23373 1.39234 1.25139 1.19885 0.82621 0.83006 0.84219 1.90770 1.74229 1.52697 1.23430 1.20292 0.82823 0.84158 0.84636 1.90731 1.74805 1.53513 1.23640 1.46067 1.23898 1.38997 1.24946 1.21479 0.89384 0.89128 0.98509 1.19189 0.92336 0.96647 0.93856 1.21486 1.08821 1.20906 1.07050 0.91723 1.25901 0.99748 0.98808 0.94884 1.70080 1.29616 1.43165 1.13851 0.85361 0.78310 0.78514 0.78629 1.18642 1.20487 1.20364 1.22249 0.91835 0.86312 1.01861 0.89476 0.93749 0.93590 0.86210 0.86451 0.88778 0.88110 0.88679 0.88914 0.73980 0.74863 0.91882 0.92101 0.97407 0.97248 0.92597 0.89768 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.20 71.98 0.66 -0.79 16 2 C -0.13 -1.02 5.61 29.85 0.17 -0.85 16 3 C 0.52 8.66 7.85 87.66 0.69 9.35 16 4 O -0.59 -15.73 16.24 -3.05 -0.05 -15.78 16 5 N -0.62 -8.09 3.33 -811.76 -2.70 -10.79 16 6 C 0.10 0.63 6.49 86.73 0.56 1.20 16 7 C -0.14 -1.33 6.66 31.88 0.21 -1.12 16 8 C 0.13 1.94 3.44 46.49 0.16 2.10 16 9 H 0.10 1.81 7.54 -2.38 -0.02 1.79 16 10 N -0.68 -12.74 5.20 -436.79 -2.27 -15.01 16 11 C 0.52 13.73 7.89 87.27 0.69 14.41 16 12 O -0.53 -16.06 16.12 -3.25 -0.05 -16.11 16 13 C 0.50 15.95 7.89 87.27 0.69 16.64 16 14 O -0.55 -19.30 16.48 -3.24 -0.05 -19.35 16 15 N -0.69 -24.01 5.55 -464.42 -2.58 -26.59 16 16 C 0.14 5.63 5.61 86.38 0.48 6.11 16 17 C 0.02 0.86 5.09 29.85 0.15 1.01 16 18 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 19 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 20 C 0.01 0.29 5.46 84.65 0.46 0.76 16 21 N -0.93 -54.24 13.29 21.45 0.28 -53.95 16 22 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.10 1.51 6.54 86.86 0.57 2.08 16 27 H 0.09 0.46 8.14 -2.39 -0.02 0.45 16 28 H 0.04 0.62 8.10 -2.39 -0.02 0.60 16 29 H 0.04 0.62 8.10 -2.38 -0.02 0.60 16 30 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.12 0.40 8.14 -2.39 -0.02 0.39 16 32 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.42 6.99 8.04 -92.71 -0.75 6.24 16 37 H 0.41 13.89 7.94 -92.71 -0.74 13.15 16 38 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.27 14.57 8.31 -92.71 -0.77 13.79 16 43 H 0.08 1.13 8.00 -2.39 -0.02 1.12 16 44 H 0.07 1.33 8.03 -2.39 -0.02 1.31 16 Total: -1.00 -73.10 375.26 -0.12 -73.23 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.46 Total: 17.91 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 5.73 Total: 21.42 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -7.26 Total: -106.35 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.16 Total: -51.25 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -73.10 -0.12 -73.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261124080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.773 kcal (2) G-P(sol) polarization free energy of solvation -73.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.29 seconds