Wall clock time and date at job start Tue Mar 31 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47066 * 2 1 4 4 C 1.46499 * 119.99870 * 270.00160 * 3 2 1 5 5 C 1.34773 * 120.00235 * 90.00109 * 3 2 1 6 6 O 1.21279 * 120.00177 * 359.97438 * 5 3 2 7 7 C 1.50703 * 120.00255 * 180.02562 * 5 3 2 8 8 N 1.46499 * 109.47047 * 179.97438 * 7 5 3 9 9 C 1.34775 * 119.99679 * 180.02562 * 8 7 5 10 10 O 1.21348 * 120.00198 * 359.97438 * 9 8 7 11 11 C 1.49451 * 119.99978 * 179.97438 * 9 8 7 12 12 O 1.21348 * 119.99843 * 355.04095 * 11 9 8 13 13 N 1.34779 * 119.99859 * 174.76882 * 11 9 8 14 14 C 1.46501 * 119.99748 * 186.05255 * 13 11 9 15 15 C 1.53004 * 109.47193 * 183.68082 * 14 13 11 16 16 C 1.50700 * 115.54589 * 306.39681 * 15 14 13 17 17 H 1.08004 * 119.99493 * 145.11959 * 16 15 14 18 18 C 1.37875 * 120.00428 * 325.11580 * 16 15 14 19 19 N 1.31519 * 119.99709 * 350.32728 * 18 16 15 20 20 Si 1.86797 * 120.00317 * 170.32779 * 18 16 15 21 21 H 1.48494 * 109.47445 * 90.00147 * 20 18 16 22 22 H 1.48505 * 109.47271 * 210.00491 * 20 18 16 23 23 H 1.48507 * 109.46955 * 329.99859 * 20 18 16 24 24 C 1.52995 * 117.49988 * 160.72379 * 15 14 13 25 25 C 1.52998 * 117.49814 * 92.06313 * 15 14 13 26 26 H 1.08997 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47011 * 300.00202 * 1 2 3 28 28 H 1.08998 * 109.47083 * 60.00492 * 1 2 3 29 29 H 1.09002 * 109.47011 * 239.99798 * 2 1 3 30 30 H 1.08998 * 109.47083 * 119.99508 * 2 1 3 31 31 H 1.09003 * 109.47189 * 269.99462 * 4 3 2 32 32 H 1.08998 * 109.47383 * 29.99682 * 4 3 2 33 33 H 1.08998 * 109.47213 * 149.99942 * 4 3 2 34 34 H 1.09006 * 109.46948 * 59.99907 * 7 5 3 35 35 H 1.08995 * 109.46879 * 299.99934 * 7 5 3 36 36 H 0.96992 * 120.00053 * 359.97438 * 8 7 5 37 37 H 0.96997 * 120.00326 * 6.04884 * 13 11 9 38 38 H 1.08999 * 109.47362 * 303.68319 * 14 13 11 39 39 H 1.09001 * 109.46982 * 63.68196 * 14 13 11 40 40 H 0.97000 * 119.99952 * 185.03406 * 19 18 16 41 41 H 1.09008 * 117.50113 * 0.02562 * 24 15 14 42 42 H 1.09003 * 117.49766 * 145.01986 * 24 15 14 43 43 H 1.09001 * 117.49784 * 214.97982 * 25 15 14 44 44 H 1.09000 * 117.50059 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 2.2430 2.0166 1.1671 6 8 2.0405 1.4451 2.2175 7 6 2.7448 3.4376 1.1671 8 7 2.9071 3.8981 2.5484 9 6 3.3477 5.1478 2.7946 10 8 3.6105 5.8913 1.8722 11 6 3.5128 5.6179 4.2036 12 8 3.1656 4.9081 5.1246 13 7 4.0523 6.8279 4.4515 14 6 4.3367 7.2346 5.8299 15 6 4.8549 8.6741 5.8403 16 6 6.0309 8.9480 4.9387 17 1 6.1196 9.9030 4.4420 18 6 6.9936 7.9797 4.7478 19 7 6.9920 6.8953 5.4920 20 14 8.3001 8.2078 3.4325 21 1 9.4733 8.9066 4.0159 22 1 8.7208 6.8802 2.9169 23 1 7.7449 9.0180 2.3186 24 6 4.7847 9.4407 7.1625 25 6 3.8276 9.7934 6.0212 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.2920 1.9006 -1.5834 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 2.0264 4.0766 0.6535 35 1 3.7048 3.4839 0.6531 36 1 2.6967 3.3040 3.2856 37 1 4.2524 7.4293 3.7173 38 1 3.4240 7.1726 6.4226 39 1 5.0918 6.5735 6.2553 40 1 7.7102 6.2486 5.4084 41 1 4.3697 8.9193 8.0252 42 1 5.5890 10.1434 7.3801 43 1 4.0026 10.7281 5.4884 44 1 2.7825 9.5043 6.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261143338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:26 Heat of formation + Delta-G solvation = -96.585590 kcal Electronic energy + Delta-G solvation = -25896.789900 eV Core-core repulsion = 22042.600182 eV Total energy + Delta-G solvation = -3854.189719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -41.81136 -40.97639 -39.57710 -38.44484 -37.10323 -35.97983 -34.74656 -34.13325 -32.49416 -29.60069 -28.26248 -27.60259 -27.38508 -24.89997 -23.58458 -22.92403 -21.41372 -21.21934 -20.52493 -19.60850 -18.22982 -18.19072 -17.52009 -17.41164 -17.28754 -16.80988 -16.57369 -16.28881 -15.93655 -15.58981 -15.16774 -14.90604 -14.73065 -14.40766 -14.35983 -14.15752 -13.73214 -13.57768 -13.43514 -13.40286 -13.05083 -12.90644 -12.88434 -12.75716 -12.65576 -12.30153 -12.04310 -11.97436 -11.44159 -11.13436 -11.09250 -10.72724 -10.62407 -10.49861 -10.16382 -9.83396 -9.80612 -8.04410 -6.19535 0.38817 1.23347 1.34594 1.41193 1.46665 1.54283 1.94955 2.21135 2.41165 2.73932 3.04937 3.27790 3.54314 3.69152 4.08958 4.12051 4.18142 4.22809 4.27025 4.30330 4.50885 4.52073 4.70139 4.71350 4.76722 4.79336 4.89769 4.97639 4.98127 5.00244 5.07549 5.27095 5.27447 5.46259 5.48292 5.56530 5.59426 5.89882 5.93059 6.14798 6.35772 6.46393 6.72877 6.84284 6.91111 7.09590 7.43663 8.90178 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.019277 B = 0.003067 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.196616 B = 9126.647529 C = 9899.473795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.607 5.607 4 C 0.063 3.937 5 C 0.506 3.494 6 O -0.573 6.573 7 C 0.098 3.902 8 N -0.689 5.689 9 C 0.520 3.480 10 O -0.534 6.534 11 C 0.491 3.509 12 O -0.564 6.564 13 N -0.651 5.651 14 C 0.169 3.831 15 C 0.004 3.996 16 C -0.506 4.506 17 H 0.059 0.941 18 C 0.037 3.963 19 N -0.894 5.894 20 Si 0.943 3.057 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.265 1.265 24 C -0.192 4.192 25 C -0.187 4.187 26 H 0.081 0.919 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.419 0.581 37 H 0.412 0.588 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.260 0.740 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 -11.056 -16.028 22.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.016 4.016 3 N -0.340 5.340 4 C -0.079 4.079 5 C 0.294 3.706 6 O -0.453 6.453 7 C -0.028 4.028 8 N -0.345 5.345 9 C 0.300 3.700 10 O -0.410 6.410 11 C 0.271 3.729 12 O -0.445 6.445 13 N -0.299 5.299 14 C 0.046 3.954 15 C 0.004 3.996 16 C -0.544 4.544 17 H 0.078 0.922 18 C -0.165 4.165 19 N -0.531 5.531 20 Si 0.770 3.230 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.189 1.189 24 C -0.230 4.230 25 C -0.224 4.224 26 H 0.099 0.901 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.258 0.742 37 H 0.248 0.752 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.638 -11.540 -15.549 22.093 hybrid contribution 0.926 0.098 -0.138 0.941 sum -9.712 -11.442 -15.687 21.710 Atomic orbital electron populations 1.22086 0.95149 1.03140 1.01725 1.21631 0.94989 0.81131 1.03885 1.47949 1.64733 1.15000 1.06322 1.22227 1.03383 0.98371 0.83910 1.20604 0.77510 0.88355 0.84146 1.90722 1.53783 1.68205 1.32550 1.21440 1.04986 0.92815 0.83531 1.45470 1.65220 1.13672 1.10125 1.19994 0.78006 0.82700 0.89254 1.90728 1.49605 1.55090 1.45616 1.20166 0.80241 0.83119 0.89377 1.90686 1.51549 1.55809 1.46438 1.45631 1.57533 1.15336 1.11437 1.20945 0.97329 0.96799 0.80342 1.19228 0.95569 0.88358 0.96473 1.20705 1.06426 1.00062 1.27185 0.92244 1.25541 0.99280 0.94609 0.97058 1.69966 1.32396 1.11379 1.39387 0.85764 0.79688 0.77203 0.80382 1.20347 1.21597 1.18912 1.22939 1.02017 1.05239 0.92834 1.22981 0.95013 1.00839 1.03560 0.90058 0.94872 0.91054 0.87103 0.91874 0.90690 0.88189 0.89779 0.85730 0.86406 0.74226 0.75164 0.94348 0.89796 0.93065 0.90284 0.90412 0.89728 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 10.24 71.98 0.74 -1.19 16 2 C 0.11 1.35 6.13 86.38 0.53 1.88 16 3 N -0.61 -8.91 2.87 -846.76 -2.43 -11.34 16 4 C 0.06 0.41 10.24 127.77 1.31 1.72 16 5 C 0.51 11.35 7.74 87.66 0.68 12.03 16 6 O -0.57 -17.73 15.25 -3.03 -0.05 -17.77 16 7 C 0.10 2.13 4.71 85.63 0.40 2.53 16 8 N -0.69 -21.21 5.52 -468.14 -2.58 -23.79 16 9 C 0.52 19.17 7.89 87.27 0.69 19.86 16 10 O -0.53 -20.45 16.49 -3.24 -0.05 -20.51 16 11 C 0.49 21.18 7.88 87.27 0.69 21.87 16 12 O -0.56 -26.48 16.48 -3.24 -0.05 -26.53 16 13 N -0.65 -29.27 5.27 -464.40 -2.45 -31.71 16 14 C 0.17 8.03 4.74 86.38 0.41 8.44 16 15 C 0.00 0.21 2.00 -52.93 -0.11 0.10 16 16 C -0.51 -25.82 8.28 25.60 0.21 -25.61 16 17 H 0.06 3.01 7.83 -2.91 -0.02 2.99 16 18 C 0.04 1.91 5.14 84.65 0.44 2.34 16 19 N -0.89 -48.57 10.71 21.45 0.23 -48.34 16 20 Si 0.94 41.92 29.55 68.60 2.03 43.95 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 24 C -0.19 -8.16 9.96 30.62 0.30 -7.85 16 25 C -0.19 -7.46 9.92 30.62 0.30 -7.16 16 26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.72 8.07 -2.39 -0.02 0.70 16 30 H 0.06 1.12 7.42 -2.39 -0.02 1.10 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 0.23 8.07 -2.39 -0.02 0.21 16 33 H 0.08 0.48 6.44 -2.39 -0.02 0.47 16 34 H 0.13 2.17 7.40 -2.38 -0.02 2.15 16 35 H 0.12 2.24 8.11 -2.39 -0.02 2.22 16 36 H 0.42 13.95 6.92 -92.71 -0.64 13.31 16 37 H 0.41 18.52 7.41 -92.71 -0.69 17.84 16 38 H 0.04 1.76 8.06 -2.39 -0.02 1.74 16 39 H 0.08 4.56 6.02 -2.39 -0.01 4.55 16 40 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 41 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 42 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -67.15 373.53 0.93 -66.22 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -0.30 Total: 40.87 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 6.59 Total: 28.97 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -7.23 Total: -115.19 kcal Atomic # 8 Polarization: -64.66 SS G_CDS: -0.15 Total: -64.81 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -67.15 0.93 -66.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261143338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.365 kcal (2) G-P(sol) polarization free energy of solvation -67.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds