Wall clock time and date at job start Tue Mar 31 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 H 1.09001 * 110.96924 * 216.42557 * 5 4 3 7 7 C 1.53001 * 110.96983 * 92.65987 * 5 4 3 8 8 N 1.46500 * 109.46956 * 175.00184 * 7 5 4 9 9 C 1.34776 * 120.00068 * 180.02562 * 8 7 5 10 10 O 1.21352 * 119.99499 * 359.97438 * 9 8 7 11 11 C 1.49451 * 120.00391 * 179.97438 * 9 8 7 12 12 O 1.21349 * 119.99760 * 359.97438 * 11 9 8 13 13 N 1.34771 * 120.00090 * 179.97438 * 11 9 8 14 14 C 1.46495 * 119.99986 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.47465 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47396 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99954 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00015 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99728 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00098 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47294 * 89.99728 * 20 18 16 22 22 H 1.48500 * 109.47387 * 209.99860 * 20 18 16 23 23 H 1.48506 * 109.47216 * 330.00279 * 20 18 16 24 24 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 25 25 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 26 26 O 1.21286 * 124.90539 * 359.55259 * 25 3 2 27 27 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 29 29 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 30 30 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 31 31 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 32 32 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 33 33 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 34 34 H 1.09001 * 109.46982 * 295.00095 * 7 5 4 35 35 H 1.08998 * 109.47052 * 55.00265 * 7 5 4 36 36 H 0.96999 * 120.00025 * 359.97438 * 8 7 5 37 37 H 0.97006 * 120.00132 * 0.02562 * 13 11 9 38 38 H 1.09000 * 109.47613 * 300.00526 * 14 13 11 39 39 H 1.09006 * 109.47413 * 60.00096 * 14 13 11 40 40 H 1.09001 * 109.46659 * 300.00176 * 15 14 13 41 41 H 1.08996 * 109.46945 * 59.99639 * 15 14 13 42 42 H 0.97006 * 119.99896 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.48694 * 143.47575 * 24 5 4 44 44 H 1.08994 * 110.49106 * 266.12244 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 1 3.1112 4.1878 1.3043 7 6 0.9829 4.3050 0.8864 8 7 1.1003 5.7273 0.5555 9 6 0.0136 6.5230 0.6066 10 8 -1.0620 6.0611 0.9263 11 6 0.1334 7.9741 0.2696 12 8 1.2092 8.4360 -0.0496 13 7 -0.9533 8.7696 0.3202 14 6 -0.8358 10.1921 -0.0096 15 6 -2.2046 10.8620 0.1263 16 6 -2.0838 12.3252 -0.2136 17 1 -1.1265 12.7361 -0.4985 18 6 -3.1956 13.1390 -0.1619 19 7 -3.0900 14.4160 -0.4581 20 14 -4.8517 12.4278 0.3286 21 1 -5.0169 12.5279 1.8010 22 1 -5.9357 13.1879 -0.3439 23 1 -4.9191 11.0020 -0.0811 24 6 2.7499 3.4854 -0.7357 25 6 2.2720 2.0997 -1.1098 26 8 2.1363 1.6946 -2.2449 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.2503 1.8640 1.6428 33 1 1.4942 2.0251 1.9391 34 1 0.2772 3.8304 0.2047 35 1 0.6261 4.1986 1.9109 36 1 1.9602 6.0966 0.3004 37 1 -1.8132 8.4004 0.5758 38 1 -0.1303 10.6663 0.6728 39 1 -0.4784 10.2994 -1.0338 40 1 -2.9103 10.3879 -0.5559 41 1 -2.5615 10.7548 1.1505 42 1 -3.8721 14.9887 -0.4214 43 1 2.2481 4.2389 -1.3428 44 1 3.8312 3.5599 -0.8505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326703630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:02 Heat of formation + Delta-G solvation = -113.250489 kcal Electronic energy + Delta-G solvation = -25075.423885 eV Core-core repulsion = 21220.511522 eV Total energy + Delta-G solvation = -3854.912363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15438 -40.40342 -38.46676 -37.20318 -35.84311 -35.15689 -33.71462 -32.81036 -30.42918 -30.28203 -28.61932 -26.98272 -25.42903 -23.83268 -23.14351 -21.49137 -20.91763 -20.36522 -19.74012 -18.44309 -17.24307 -17.10930 -16.90722 -16.53884 -16.14851 -15.84604 -15.38426 -14.93163 -14.87534 -14.42937 -14.22494 -14.17042 -13.87018 -13.82683 -13.68980 -13.44352 -13.11921 -12.77928 -12.62893 -12.53056 -12.25437 -11.97774 -11.66664 -11.59252 -11.55402 -11.51594 -11.26525 -10.46181 -10.32874 -10.17876 -9.97395 -9.53899 -9.51635 -9.34177 -9.21412 -8.80620 -8.62682 -6.13555 -4.14355 1.48048 2.15900 2.35161 2.52509 3.25543 3.30071 3.33770 3.35516 3.62818 3.78364 3.92485 3.98109 4.32775 4.36634 4.54571 4.60854 4.67008 4.76286 4.88598 4.91002 4.99163 5.10214 5.11799 5.19494 5.24443 5.32647 5.41094 5.47774 5.73222 5.92928 5.94267 6.07045 6.08111 6.44483 6.47998 6.62973 6.85802 7.05581 7.16620 7.49795 7.60985 7.74833 7.78604 8.16469 8.40334 8.89633 9.46320 10.99128 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.027628 B = 0.002139 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.221131 B =13084.717156 C =13486.584952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 N -0.623 5.623 4 C 0.112 3.888 5 C -0.115 4.115 6 H 0.111 0.889 7 C 0.126 3.874 8 N -0.706 5.706 9 C 0.509 3.491 10 O -0.519 6.519 11 C 0.499 3.501 12 O -0.528 6.528 13 N -0.690 5.690 14 C 0.127 3.873 15 C -0.024 4.024 16 C -0.524 4.524 17 H 0.077 0.923 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.156 4.156 25 C 0.518 3.482 26 O -0.528 6.528 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.414 0.586 37 H 0.409 0.591 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.265 0.735 43 H 0.107 0.893 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.962 -29.441 6.270 32.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.358 5.358 4 C -0.012 4.012 5 C -0.134 4.134 6 H 0.130 0.870 7 C 0.002 3.998 8 N -0.360 5.360 9 C 0.290 3.710 10 O -0.394 6.394 11 C 0.278 3.722 12 O -0.406 6.406 13 N -0.341 5.341 14 C 0.005 3.995 15 C -0.062 4.062 16 C -0.563 4.563 17 H 0.095 0.905 18 C -0.132 4.132 19 N -0.535 5.535 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.196 4.196 25 C 0.306 3.694 26 O -0.404 6.404 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.251 0.749 37 H 0.244 0.756 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.126 0.874 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.731 -29.546 5.642 32.286 hybrid contribution -0.973 -0.220 0.359 1.060 sum 10.758 -29.765 6.001 32.214 Atomic orbital electron populations 1.22174 0.95550 1.02523 1.02750 1.21348 0.94534 0.80867 1.03156 1.48408 1.66254 1.14022 1.07166 1.22050 1.02372 0.89130 0.87656 1.22442 0.98226 0.96064 0.96680 0.87040 1.21439 0.96216 0.79938 1.02194 1.45685 1.12266 1.09080 1.69011 1.20445 0.84341 0.87884 0.78297 1.90764 1.26980 1.75975 1.45717 1.19919 0.85413 0.86702 0.80166 1.90750 1.26953 1.75647 1.47240 1.46213 1.11011 1.11243 1.65644 1.21726 1.00991 0.75829 1.00912 1.19827 0.91800 0.97307 0.97226 1.20869 0.97443 0.90699 1.47251 0.90527 1.24991 0.99049 0.94692 0.94499 1.69900 1.30425 1.04631 1.48533 0.86762 0.83732 0.79706 0.78980 1.20165 1.21225 1.18954 1.22508 1.04230 0.96181 0.96641 1.20959 0.76399 0.87702 0.84385 1.90747 1.53026 1.75560 1.21077 0.91304 0.92235 0.92114 0.89995 0.90256 0.90119 0.89719 0.90772 0.90129 0.74918 0.75560 0.91217 0.91190 0.95718 0.96152 0.92495 0.87444 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.24 37.16 0.38 -0.61 16 2 C 0.12 0.68 6.66 -4.04 -0.03 0.65 16 3 N -0.62 -4.02 2.94 -172.35 -0.51 -4.53 16 4 C 0.11 0.38 6.89 -3.12 -0.02 0.36 16 5 C -0.11 -0.46 3.16 -88.99 -0.28 -0.75 16 6 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 7 C 0.13 0.86 4.96 -4.04 -0.02 0.84 16 8 N -0.71 -6.53 5.34 -60.73 -0.32 -6.85 16 9 C 0.51 6.74 7.89 -11.59 -0.09 6.65 16 10 O -0.52 -7.93 16.48 5.49 0.09 -7.83 16 11 C 0.50 7.83 7.89 -11.59 -0.09 7.74 16 12 O -0.53 -9.23 16.48 5.50 0.09 -9.14 16 13 N -0.69 -11.51 5.55 -60.73 -0.34 -11.84 16 14 C 0.13 2.49 5.61 -4.04 -0.02 2.47 16 15 C -0.02 -0.54 4.16 -27.88 -0.12 -0.65 16 16 C -0.52 -14.43 9.66 -34.44 -0.33 -14.77 16 17 H 0.08 2.27 7.99 -52.48 -0.42 1.85 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 20 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 24 C -0.16 -0.94 6.36 -26.74 -0.17 -1.11 16 25 C 0.52 4.81 8.03 -10.77 -0.09 4.72 16 26 O -0.53 -7.33 17.60 5.55 0.10 -7.23 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.08 0.22 7.88 -51.93 -0.41 -0.19 16 34 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 35 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.41 3.29 7.94 -40.82 -0.32 2.97 16 37 H 0.41 6.34 7.95 -40.82 -0.32 6.01 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 41 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.11 0.77 7.76 -51.93 -0.40 0.36 16 44 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -35.33 373.57 -7.00 -42.34 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.87 Total: 1.93 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -0.98 Total: 7.43 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.39 Total: -49.47 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.28 Total: -24.21 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.33 -7.00 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326703630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.913 kcal (2) G-P(sol) polarization free energy of solvation -35.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds