Wall clock time and date at job start Tue Mar 31 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 H 1.09001 * 110.96924 * 216.42557 * 5 4 3 7 7 C 1.53001 * 110.96983 * 92.65987 * 5 4 3 8 8 N 1.46500 * 109.46956 * 175.00184 * 7 5 4 9 9 C 1.34776 * 120.00068 * 180.02562 * 8 7 5 10 10 O 1.21352 * 119.99499 * 359.97438 * 9 8 7 11 11 C 1.49451 * 120.00391 * 179.97438 * 9 8 7 12 12 O 1.21349 * 119.99760 * 359.97438 * 11 9 8 13 13 N 1.34771 * 120.00090 * 179.97438 * 11 9 8 14 14 C 1.46495 * 119.99986 * 179.97438 * 13 11 9 15 15 C 1.53004 * 109.47465 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47396 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99954 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00015 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99728 * 179.97438 * 18 16 15 20 20 Si 1.86792 * 120.00098 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47294 * 89.99728 * 20 18 16 22 22 H 1.48500 * 109.47387 * 209.99860 * 20 18 16 23 23 H 1.48506 * 109.47216 * 330.00279 * 20 18 16 24 24 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 25 25 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 26 26 O 1.21286 * 124.90539 * 359.55259 * 25 3 2 27 27 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 29 29 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 30 30 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 31 31 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 32 32 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 33 33 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 34 34 H 1.09001 * 109.46982 * 295.00095 * 7 5 4 35 35 H 1.08998 * 109.47052 * 55.00265 * 7 5 4 36 36 H 0.96999 * 120.00025 * 359.97438 * 8 7 5 37 37 H 0.97006 * 120.00132 * 0.02562 * 13 11 9 38 38 H 1.09000 * 109.47613 * 300.00526 * 14 13 11 39 39 H 1.09006 * 109.47413 * 60.00096 * 14 13 11 40 40 H 1.09001 * 109.46659 * 300.00176 * 15 14 13 41 41 H 1.08996 * 109.46945 * 59.99639 * 15 14 13 42 42 H 0.97006 * 119.99896 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.48694 * 143.47575 * 24 5 4 44 44 H 1.08994 * 110.49106 * 266.12244 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 1 3.1112 4.1878 1.3043 7 6 0.9829 4.3050 0.8864 8 7 1.1003 5.7273 0.5555 9 6 0.0136 6.5230 0.6066 10 8 -1.0620 6.0611 0.9263 11 6 0.1334 7.9741 0.2696 12 8 1.2092 8.4360 -0.0496 13 7 -0.9533 8.7696 0.3202 14 6 -0.8358 10.1921 -0.0096 15 6 -2.2046 10.8620 0.1263 16 6 -2.0838 12.3252 -0.2136 17 1 -1.1265 12.7361 -0.4985 18 6 -3.1956 13.1390 -0.1619 19 7 -3.0900 14.4160 -0.4581 20 14 -4.8517 12.4278 0.3286 21 1 -5.0169 12.5279 1.8010 22 1 -5.9357 13.1879 -0.3439 23 1 -4.9191 11.0020 -0.0811 24 6 2.7499 3.4854 -0.7357 25 6 2.2720 2.0997 -1.1098 26 8 2.1363 1.6946 -2.2449 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.2503 1.8640 1.6428 33 1 1.4942 2.0251 1.9391 34 1 0.2772 3.8304 0.2047 35 1 0.6261 4.1986 1.9109 36 1 1.9602 6.0966 0.3004 37 1 -1.8132 8.4004 0.5758 38 1 -0.1303 10.6663 0.6728 39 1 -0.4784 10.2994 -1.0338 40 1 -2.9103 10.3879 -0.5559 41 1 -2.5615 10.7548 1.1505 42 1 -3.8721 14.9887 -0.4214 43 1 2.2481 4.2389 -1.3428 44 1 3.8312 3.5599 -0.8505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326703630.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:02 Heat of formation + Delta-G solvation = -141.388096 kcal Electronic energy + Delta-G solvation = -25076.644023 eV Core-core repulsion = 21220.511522 eV Total energy + Delta-G solvation = -3856.132501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87987 -41.38280 -39.64037 -37.94733 -36.96944 -36.25965 -34.85405 -34.30464 -32.11927 -30.96292 -29.15116 -27.96171 -26.77453 -24.51024 -24.22012 -22.64419 -22.00571 -21.43779 -20.38015 -19.56556 -19.01733 -17.95954 -17.67949 -17.47139 -17.14546 -16.58877 -16.44030 -16.19214 -16.04704 -15.94814 -15.20704 -15.01668 -14.91777 -14.63407 -14.58496 -14.29033 -14.21734 -14.06591 -13.39407 -13.23693 -13.10550 -13.05410 -12.86789 -12.67860 -12.41845 -12.22308 -12.19296 -12.03588 -12.02923 -11.78608 -11.50979 -10.87306 -10.79010 -10.72432 -10.36539 -10.22125 -9.73313 -8.30218 -6.36890 0.32866 1.29478 1.39403 1.41356 1.52183 1.52397 2.06013 2.12964 2.36265 2.64189 3.04942 3.34116 3.36134 3.50128 3.55774 3.91419 4.12134 4.24743 4.26856 4.34515 4.39591 4.47830 4.56441 4.59795 4.67397 4.72176 4.72964 4.84324 4.85190 4.94848 4.99641 5.05404 5.16794 5.25345 5.30113 5.37375 5.58912 5.61432 5.90723 6.10459 6.20611 6.36102 6.68512 6.74822 6.93641 7.12028 7.27643 8.85935 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.027628 B = 0.002139 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.221131 B =13084.717156 C =13486.584952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.117 3.883 3 N -0.619 5.619 4 C 0.109 3.891 5 C -0.100 4.100 6 H 0.145 0.855 7 C 0.123 3.877 8 N -0.685 5.685 9 C 0.516 3.484 10 O -0.541 6.541 11 C 0.499 3.501 12 O -0.547 6.547 13 N -0.689 5.689 14 C 0.142 3.858 15 C -0.018 4.018 16 C -0.535 4.535 17 H 0.036 0.964 18 C 0.006 3.994 19 N -0.947 5.947 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.242 1.242 24 C -0.153 4.153 25 C 0.502 3.498 26 O -0.590 6.590 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.422 0.578 37 H 0.417 0.583 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.268 0.732 43 H 0.093 0.907 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.064 -31.891 8.739 35.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.004 4.004 3 N -0.353 5.353 4 C -0.013 4.013 5 C -0.118 4.118 6 H 0.163 0.837 7 C 0.000 4.000 8 N -0.339 5.339 9 C 0.296 3.704 10 O -0.418 6.418 11 C 0.280 3.720 12 O -0.426 6.426 13 N -0.341 5.341 14 C 0.019 3.981 15 C -0.056 4.056 16 C -0.574 4.574 17 H 0.055 0.945 18 C -0.191 4.191 19 N -0.587 5.587 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.165 1.165 24 C -0.192 4.192 25 C 0.291 3.709 26 O -0.471 6.471 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.261 0.739 37 H 0.254 0.746 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.877 -32.046 8.163 35.137 hybrid contribution -0.884 0.521 -0.418 1.108 sum 10.993 -31.524 7.745 34.273 Atomic orbital electron populations 1.22133 0.95799 1.03098 1.01495 1.21474 0.94302 0.80731 1.03880 1.48598 1.64726 1.14356 1.07610 1.22348 1.04620 0.87843 0.86464 1.22451 0.97140 0.96791 0.95465 0.83686 1.21652 0.97851 0.78103 1.02351 1.45672 1.11465 1.09768 1.67000 1.19893 0.85025 0.86747 0.78779 1.90765 1.27864 1.75875 1.47327 1.20381 0.84614 0.87866 0.79151 1.90741 1.27606 1.76373 1.47867 1.45990 1.11953 1.10056 1.66114 1.21272 0.99129 0.77571 1.00121 1.19696 0.93600 0.94289 0.97967 1.21202 0.95951 0.93519 1.46709 0.94536 1.26003 1.03683 0.94922 0.94500 1.70060 1.31847 1.06429 1.50365 0.85620 0.77842 0.79911 0.79035 1.18972 1.21247 1.16517 1.22526 1.05262 0.93663 0.97796 1.21596 0.75978 0.89146 0.84137 1.90704 1.55883 1.76966 1.23519 0.89930 0.91364 0.95300 0.91871 0.86887 0.87100 0.88020 0.92648 0.88726 0.73935 0.74622 0.92051 0.92362 0.94788 0.94663 0.92332 0.88886 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 10.24 71.98 0.74 -1.05 16 2 C 0.12 1.14 6.66 86.38 0.58 1.71 16 3 N -0.62 -6.87 2.94 -817.66 -2.40 -9.27 16 4 C 0.11 0.31 6.89 86.83 0.60 0.91 16 5 C -0.10 -0.44 3.16 -9.73 -0.03 -0.47 16 6 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 7 C 0.12 1.35 4.96 86.38 0.43 1.78 16 8 N -0.69 -11.05 5.34 -464.41 -2.48 -13.52 16 9 C 0.52 12.71 7.89 87.27 0.69 13.40 16 10 O -0.54 -15.55 16.48 -3.25 -0.05 -15.60 16 11 C 0.50 15.06 7.89 87.27 0.69 15.75 16 12 O -0.55 -18.61 16.48 -3.24 -0.05 -18.66 16 13 N -0.69 -22.15 5.55 -464.41 -2.58 -24.73 16 14 C 0.14 5.53 5.61 86.38 0.48 6.01 16 15 C -0.02 -0.78 4.16 29.85 0.12 -0.66 16 16 C -0.54 -29.98 9.66 25.60 0.25 -29.73 16 17 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 18 C 0.01 0.37 5.47 84.65 0.46 0.83 16 19 N -0.95 -58.44 13.96 21.45 0.30 -58.14 16 20 Si 0.95 42.64 27.47 68.60 1.88 44.52 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 24 C -0.15 -1.57 6.36 30.59 0.19 -1.37 16 25 C 0.50 9.17 8.03 87.87 0.71 9.87 16 26 O -0.59 -17.30 17.60 -3.05 -0.05 -17.35 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.86 7.93 -2.39 -0.02 0.84 16 31 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.10 0.03 7.88 -2.39 -0.02 0.02 16 34 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 35 H 0.09 0.87 8.10 -2.39 -0.02 0.85 16 36 H 0.42 5.61 7.94 -92.71 -0.74 4.87 16 37 H 0.42 12.16 7.95 -92.70 -0.74 11.43 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.03 1.44 7.20 -2.39 -0.02 1.43 16 41 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 42 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 43 H 0.09 1.25 7.76 -2.39 -0.02 1.24 16 44 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -80.60 373.57 -0.04 -80.64 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -0.51 Total: 15.13 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 5.91 Total: 16.98 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -7.16 Total: -105.66 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.16 Total: -51.61 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.52 kcal Total: -80.60 -0.04 -80.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326703630.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.749 kcal (2) G-P(sol) polarization free energy of solvation -80.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds