Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47277 * 2 1 4 4 N 1.46500 * 109.47239 * 239.99774 * 2 1 3 5 5 C 1.34774 * 119.99630 * 85.00318 * 4 2 1 6 6 O 1.21349 * 120.00173 * 359.97438 * 5 4 2 7 7 C 1.49453 * 119.99846 * 180.02562 * 5 4 2 8 8 O 1.21353 * 120.00125 * 5.08748 * 7 5 4 9 9 N 1.34774 * 120.00102 * 185.09319 * 7 5 4 10 10 C 1.46494 * 120.00151 * 184.55658 * 9 7 5 11 11 C 1.53003 * 109.47491 * 184.70074 * 10 9 7 12 12 C 1.50708 * 115.54705 * 294.79992 * 11 10 9 13 13 H 1.07999 * 119.99435 * 121.52691 * 12 11 10 14 14 C 1.37869 * 119.99831 * 301.24568 * 12 11 10 15 15 N 1.31521 * 120.00014 * 173.16061 * 14 12 11 16 16 Si 1.86803 * 120.00258 * 353.16421 * 14 12 11 17 17 H 1.48495 * 109.47128 * 94.23742 * 16 14 12 18 18 H 1.48501 * 109.46955 * 214.24149 * 16 14 12 19 19 H 1.48500 * 109.46890 * 334.23636 * 16 14 12 20 20 C 1.53001 * 117.49727 * 80.46616 * 11 10 9 21 21 C 1.52994 * 117.50267 * 149.12521 * 11 10 9 22 22 C 1.50703 * 109.46803 * 119.99866 * 2 1 3 23 23 O 1.21281 * 119.99828 * 120.00346 * 22 2 1 24 24 N 1.34769 * 120.00310 * 299.99501 * 22 2 1 25 25 C 1.46507 * 120.00053 * 180.02562 * 24 22 2 26 26 C 1.46505 * 120.00157 * 0.02562 * 24 22 2 27 27 H 1.08999 * 109.47097 * 299.99906 * 1 2 3 28 28 H 1.09000 * 109.47203 * 59.99945 * 1 2 3 29 29 H 1.08998 * 109.47277 * 179.97438 * 1 2 3 30 30 H 0.96995 * 120.00213 * 265.00525 * 4 2 1 31 31 H 0.97001 * 120.00152 * 4.55797 * 9 7 5 32 32 H 1.08998 * 109.47592 * 64.70314 * 10 9 7 33 33 H 1.08995 * 109.47447 * 304.69904 * 10 9 7 34 34 H 0.97002 * 120.00052 * 180.02562 * 15 14 12 35 35 H 1.09004 * 117.49881 * 215.00573 * 20 11 10 36 36 H 1.08997 * 117.49907 * 0.02562 * 20 11 10 37 37 H 1.09000 * 117.50159 * 359.97438 * 21 11 10 38 38 H 1.08998 * 117.50086 * 144.97404 * 21 11 10 39 39 H 1.08998 * 109.46989 * 60.00927 * 25 24 22 40 40 H 1.09004 * 109.46531 * 180.02562 * 25 24 22 41 41 H 1.08998 * 109.47194 * 300.00417 * 25 24 22 42 42 H 1.08992 * 109.47438 * 89.99223 * 26 24 22 43 43 H 1.08997 * 109.46910 * 209.99429 * 26 24 22 44 44 H 1.08998 * 109.46404 * 329.99296 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8581 1.1590 -2.4117 7 6 2.6448 -0.7229 -3.5775 8 8 2.8450 -1.9195 -3.5480 9 7 2.8713 -0.0295 -4.7107 10 6 3.2629 -0.7335 -5.9343 11 6 3.5701 0.2859 -7.0332 12 6 2.3991 1.1122 -7.4990 13 1 2.4360 2.1893 -7.4282 14 6 1.2830 0.4935 -8.0209 15 7 0.2102 1.2005 -8.3022 16 14 1.2944 -1.3490 -8.3285 17 1 0.7175 -2.0505 -7.1537 18 1 0.4839 -1.6545 -9.5347 19 1 2.6910 -1.8066 -8.5417 20 6 4.9442 0.9585 -7.0086 21 6 4.6255 -0.0935 -8.0738 22 6 2.0323 -0.7104 1.2305 23 8 2.7296 -1.6965 1.1193 24 7 1.7068 -0.2499 2.4546 25 6 2.1955 -0.9403 3.6508 26 6 0.8641 0.9410 2.5890 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.2490 -1.6318 -1.1526 31 1 2.7750 0.9357 -4.7162 32 1 2.4481 -1.3814 -6.2574 33 1 4.1502 -1.3355 -5.7390 34 1 -0.5751 0.7651 -8.6691 35 1 5.0011 1.9987 -7.3294 36 1 5.6293 0.6745 -6.2099 37 1 5.1014 -1.0692 -7.9755 38 1 4.4727 0.2541 -9.0955 39 1 3.2855 -0.9398 3.6507 40 1 1.8318 -0.4266 4.5408 41 1 1.8326 -1.9681 3.6510 42 1 -0.1837 0.6428 2.6225 43 1 1.1219 1.4664 3.5085 44 1 1.0275 1.5997 1.7361 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329327198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = -63.556812 kcal Electronic energy + Delta-G solvation = -26152.406363 eV Core-core repulsion = 22299.648879 eV Total energy + Delta-G solvation = -3852.757483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91065 -39.92479 -38.30536 -37.01651 -36.10953 -35.38388 -33.48512 -32.20935 -31.28343 -28.28408 -27.43740 -26.97414 -25.62570 -24.52689 -22.65750 -21.57994 -20.17667 -19.89572 -19.42256 -18.32048 -17.23575 -16.83105 -16.41619 -16.23666 -16.09195 -15.67494 -15.25244 -14.93451 -14.73099 -14.39802 -13.98233 -13.78962 -13.54365 -13.32968 -13.17595 -13.10789 -12.93350 -12.67395 -12.62211 -12.33483 -12.18540 -12.01698 -11.85444 -11.36584 -11.06757 -10.71469 -10.59290 -10.29703 -10.20185 -9.65289 -9.38886 -9.32637 -9.21971 -9.16411 -8.89310 -8.50891 -8.44483 -6.18778 -4.20576 1.69663 2.16238 2.26045 2.78212 3.25773 3.36601 3.41349 3.51735 3.91333 3.96626 4.36022 4.54505 4.67868 4.73018 4.77662 4.80369 4.85021 4.99500 5.11699 5.17629 5.19642 5.31774 5.38020 5.46957 5.61129 5.86846 5.89874 5.92761 6.09494 6.11066 6.12926 6.36891 6.45628 6.65955 6.79417 6.80709 6.90044 7.08206 7.18007 7.64115 7.65794 7.77193 8.05357 8.39244 8.44184 8.84191 9.44085 10.92250 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.022725 B = 0.003077 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.837445 B = 9097.489694 C = 9397.434420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.126 3.874 3 H 0.119 0.881 4 N -0.692 5.692 5 C 0.515 3.485 6 O -0.513 6.513 7 C 0.499 3.501 8 O -0.536 6.536 9 N -0.664 5.664 10 C 0.149 3.851 11 C -0.019 4.019 12 C -0.491 4.491 13 H 0.080 0.920 14 C 0.083 3.917 15 N -0.888 5.888 16 Si 0.867 3.133 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.251 1.251 20 C -0.180 4.180 21 C -0.186 4.186 22 C 0.511 3.489 23 O -0.526 6.526 24 N -0.618 5.618 25 C 0.090 3.910 26 C 0.069 3.931 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.421 0.579 31 H 0.420 0.580 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.266 0.734 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 -1.001 22.280 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.018 3.982 3 H 0.136 0.864 4 N -0.348 5.348 5 C 0.296 3.704 6 O -0.388 6.388 7 C 0.278 3.722 8 O -0.414 6.414 9 N -0.315 5.315 10 C 0.026 3.974 11 C -0.020 4.020 12 C -0.528 4.528 13 H 0.098 0.902 14 C -0.121 4.121 15 N -0.524 5.524 16 Si 0.695 3.305 17 H -0.204 1.204 18 H -0.218 1.218 19 H -0.175 1.175 20 C -0.217 4.217 21 C -0.224 4.224 22 C 0.298 3.702 23 O -0.402 6.402 24 N -0.353 5.353 25 C -0.053 4.053 26 C -0.073 4.073 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.260 0.740 31 H 0.257 0.743 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.324 -1.519 22.096 22.187 hybrid contribution -0.209 -0.918 -0.139 0.952 sum 1.115 -2.438 21.957 22.120 Atomic orbital electron populations 1.22429 0.92394 1.03796 1.04621 1.20779 0.96153 0.98081 0.83191 0.86380 1.45488 1.66164 1.15656 1.07525 1.20377 0.78651 0.86899 0.84481 1.90768 1.48184 1.15202 1.84623 1.19846 0.80369 0.87341 0.84621 1.90733 1.51868 1.14389 1.84437 1.45712 1.64680 1.12689 1.08392 1.21302 0.98856 0.94308 0.82924 1.19578 0.90473 0.97208 0.94723 1.20267 0.96961 0.94023 1.41535 0.90165 1.24926 0.94875 0.97996 0.94283 1.69897 1.03192 1.36403 1.42945 0.87055 0.79500 0.86282 0.77712 1.20416 1.21759 1.17461 1.22800 0.99716 0.97823 1.01341 1.23071 1.05544 0.97737 0.96079 1.20640 0.80231 0.84729 0.84621 1.90741 1.37271 1.26011 1.86161 1.47650 1.51951 1.29796 1.05922 1.21663 1.00108 0.97612 0.85896 1.22148 0.94705 0.86823 1.03673 0.89945 0.90080 0.91550 0.74014 0.74262 0.92018 0.92313 0.92403 0.89460 0.90784 0.91054 0.89133 0.91900 0.90429 0.91886 0.91595 0.90586 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.12 37.16 0.34 -1.25 16 2 C 0.13 1.40 2.18 -69.08 -0.15 1.25 16 3 H 0.12 1.24 6.84 -51.93 -0.36 0.89 16 4 N -0.69 -9.91 4.94 -55.36 -0.27 -10.19 16 5 C 0.51 8.76 7.85 -11.59 -0.09 8.67 16 6 O -0.51 -9.33 16.16 5.50 0.09 -9.24 16 7 C 0.50 9.70 7.88 -11.58 -0.09 9.61 16 8 O -0.54 -11.29 16.47 5.49 0.09 -11.20 16 9 N -0.66 -13.50 5.46 -60.73 -0.33 -13.83 16 10 C 0.15 3.21 5.08 -4.04 -0.02 3.19 16 11 C -0.02 -0.41 0.85 -155.66 -0.13 -0.54 16 12 C -0.49 -13.00 9.19 -34.44 -0.32 -13.32 16 13 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 14 C 0.08 2.30 5.46 -17.82 -0.10 2.21 16 15 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 16 Si 0.87 21.25 24.70 -169.99 -4.20 17.06 16 17 H -0.28 -6.91 6.96 56.52 0.39 -6.52 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.25 -5.77 6.11 56.52 0.35 -5.43 16 20 C -0.18 -3.46 9.96 -26.70 -0.27 -3.72 16 21 C -0.19 -3.76 8.69 -26.70 -0.23 -3.99 16 22 C 0.51 5.73 7.14 -10.99 -0.08 5.65 16 23 O -0.53 -7.79 15.84 5.56 0.09 -7.70 16 24 N -0.62 -4.80 3.27 -189.51 -0.62 -5.42 16 25 C 0.09 0.56 10.16 59.85 0.61 1.17 16 26 C 0.07 0.30 8.77 59.85 0.52 0.82 16 27 H 0.08 0.50 4.53 -51.93 -0.24 0.26 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.42 6.27 7.27 -40.82 -0.30 5.98 16 31 H 0.42 8.49 7.83 -40.82 -0.32 8.17 16 32 H 0.06 1.45 4.27 -51.93 -0.22 1.23 16 33 H 0.06 1.18 8.06 -51.93 -0.42 0.77 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.26 7.79 -51.93 -0.40 -0.15 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.21 6.95 -51.93 -0.36 -0.15 16 43 H 0.08 0.19 7.92 -51.93 -0.41 -0.22 16 44 H 0.08 0.34 6.01 -51.93 -0.31 0.03 16 LS Contribution 362.29 15.07 5.46 5.46 Total: -1.00 -33.33 362.29 -5.27 -38.60 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.34 Total: 12.21 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 0.00 Total: 9.75 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.45 Total: -54.93 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: 0.27 Total: -28.15 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.20 Total: 17.06 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.33 -5.27 -38.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329327198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.958 kcal (2) G-P(sol) polarization free energy of solvation -33.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds