Wall clock time and date at job start Tue Mar 31 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47277 * 2 1 4 4 N 1.46500 * 109.47239 * 239.99774 * 2 1 3 5 5 C 1.34774 * 119.99630 * 85.00318 * 4 2 1 6 6 O 1.21349 * 120.00173 * 359.97438 * 5 4 2 7 7 C 1.49453 * 119.99846 * 180.02562 * 5 4 2 8 8 O 1.21353 * 120.00125 * 5.08748 * 7 5 4 9 9 N 1.34774 * 120.00102 * 185.09319 * 7 5 4 10 10 C 1.46494 * 120.00151 * 184.55658 * 9 7 5 11 11 C 1.53003 * 109.47491 * 184.70074 * 10 9 7 12 12 C 1.50708 * 115.54705 * 294.79992 * 11 10 9 13 13 H 1.07999 * 119.99435 * 121.52691 * 12 11 10 14 14 C 1.37869 * 119.99831 * 301.24568 * 12 11 10 15 15 N 1.31521 * 120.00014 * 173.16061 * 14 12 11 16 16 Si 1.86803 * 120.00258 * 353.16421 * 14 12 11 17 17 H 1.48495 * 109.47128 * 94.23742 * 16 14 12 18 18 H 1.48501 * 109.46955 * 214.24149 * 16 14 12 19 19 H 1.48500 * 109.46890 * 334.23636 * 16 14 12 20 20 C 1.53001 * 117.49727 * 80.46616 * 11 10 9 21 21 C 1.52994 * 117.50267 * 149.12521 * 11 10 9 22 22 C 1.50703 * 109.46803 * 119.99866 * 2 1 3 23 23 O 1.21281 * 119.99828 * 120.00346 * 22 2 1 24 24 N 1.34769 * 120.00310 * 299.99501 * 22 2 1 25 25 C 1.46507 * 120.00053 * 180.02562 * 24 22 2 26 26 C 1.46505 * 120.00157 * 0.02562 * 24 22 2 27 27 H 1.08999 * 109.47097 * 299.99906 * 1 2 3 28 28 H 1.09000 * 109.47203 * 59.99945 * 1 2 3 29 29 H 1.08998 * 109.47277 * 179.97438 * 1 2 3 30 30 H 0.96995 * 120.00213 * 265.00525 * 4 2 1 31 31 H 0.97001 * 120.00152 * 4.55797 * 9 7 5 32 32 H 1.08998 * 109.47592 * 64.70314 * 10 9 7 33 33 H 1.08995 * 109.47447 * 304.69904 * 10 9 7 34 34 H 0.97002 * 120.00052 * 180.02562 * 15 14 12 35 35 H 1.09004 * 117.49881 * 215.00573 * 20 11 10 36 36 H 1.08997 * 117.49907 * 0.02562 * 20 11 10 37 37 H 1.09000 * 117.50159 * 359.97438 * 21 11 10 38 38 H 1.08998 * 117.50086 * 144.97404 * 21 11 10 39 39 H 1.08998 * 109.46989 * 60.00927 * 25 24 22 40 40 H 1.09004 * 109.46531 * 180.02562 * 25 24 22 41 41 H 1.08998 * 109.47194 * 300.00417 * 25 24 22 42 42 H 1.08992 * 109.47438 * 89.99223 * 26 24 22 43 43 H 1.08997 * 109.46910 * 209.99429 * 26 24 22 44 44 H 1.08998 * 109.46404 * 329.99296 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8581 1.1590 -2.4117 7 6 2.6448 -0.7229 -3.5775 8 8 2.8450 -1.9195 -3.5480 9 7 2.8713 -0.0295 -4.7107 10 6 3.2629 -0.7335 -5.9343 11 6 3.5701 0.2859 -7.0332 12 6 2.3991 1.1122 -7.4990 13 1 2.4360 2.1893 -7.4282 14 6 1.2830 0.4935 -8.0209 15 7 0.2102 1.2005 -8.3022 16 14 1.2944 -1.3490 -8.3285 17 1 0.7175 -2.0505 -7.1537 18 1 0.4839 -1.6545 -9.5347 19 1 2.6910 -1.8066 -8.5417 20 6 4.9442 0.9585 -7.0086 21 6 4.6255 -0.0935 -8.0738 22 6 2.0323 -0.7104 1.2305 23 8 2.7296 -1.6965 1.1193 24 7 1.7068 -0.2499 2.4546 25 6 2.1955 -0.9403 3.6508 26 6 0.8641 0.9410 2.5890 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.2490 -1.6318 -1.1526 31 1 2.7750 0.9357 -4.7162 32 1 2.4481 -1.3814 -6.2574 33 1 4.1502 -1.3355 -5.7390 34 1 -0.5751 0.7651 -8.6691 35 1 5.0011 1.9987 -7.3294 36 1 5.6293 0.6745 -6.2099 37 1 5.1014 -1.0692 -7.9755 38 1 4.4727 0.2541 -9.0955 39 1 3.2855 -0.9398 3.6507 40 1 1.8318 -0.4266 4.5408 41 1 1.8326 -1.9681 3.6510 42 1 -0.1837 0.6428 2.6225 43 1 1.1219 1.4664 3.5085 44 1 1.0275 1.5997 1.7361 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329327198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:38 Heat of formation + Delta-G solvation = -90.481995 kcal Electronic energy + Delta-G solvation = -26153.573926 eV Core-core repulsion = 22299.648879 eV Total energy + Delta-G solvation = -3853.925047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 311.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04954 -41.09634 -39.74577 -38.68723 -36.83903 -36.52891 -35.05211 -34.29688 -32.26606 -29.17870 -28.68954 -27.65460 -27.48647 -25.72590 -23.82220 -23.14188 -21.49998 -21.24530 -20.74644 -19.72787 -18.42603 -18.29356 -17.52115 -17.46181 -17.28995 -17.01137 -16.65969 -16.40586 -15.94676 -15.54876 -15.37660 -14.92674 -14.86023 -14.73313 -14.49704 -14.13669 -13.90817 -13.86557 -13.68858 -13.40720 -13.17866 -13.03197 -12.88439 -12.79893 -12.65247 -12.39553 -12.17387 -12.09302 -11.50855 -11.11870 -11.08086 -10.84893 -10.75888 -10.52714 -10.37760 -10.12198 -9.79691 -8.32238 -6.35553 0.25077 1.11345 1.30479 1.33195 1.36875 1.46998 1.89605 2.07720 2.32494 2.55385 2.96656 3.21438 3.31826 3.44902 3.86993 3.91850 3.94502 4.21107 4.23171 4.38376 4.42346 4.45591 4.46582 4.52544 4.66019 4.69430 4.74759 4.84390 4.90855 4.92552 5.01322 5.03912 5.14383 5.18797 5.27374 5.38877 5.52795 5.66498 5.83936 6.11964 6.27758 6.31259 6.62293 6.71409 6.87318 6.89302 7.31525 8.82511 Molecular weight = 311.17amu Principal moments of inertia in cm(-1) A = 0.022725 B = 0.003077 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.837445 B = 9097.489694 C = 9397.434420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 H 0.127 0.873 4 N -0.682 5.682 5 C 0.521 3.479 6 O -0.529 6.529 7 C 0.497 3.503 8 O -0.553 6.553 9 N -0.669 5.669 10 C 0.153 3.847 11 C -0.047 4.047 12 C -0.480 4.480 13 H 0.043 0.957 14 C 0.032 3.968 15 N -0.938 5.938 16 Si 0.919 3.081 17 H -0.286 1.286 18 H -0.295 1.295 19 H -0.223 1.223 20 C -0.157 4.157 21 C -0.176 4.176 22 C 0.508 3.492 23 O -0.572 6.572 24 N -0.610 5.610 25 C 0.085 3.915 26 C 0.057 3.943 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.419 0.581 31 H 0.419 0.581 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.265 0.735 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.114 0.886 41 H 0.054 0.946 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 -1.426 24.274 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 H 0.144 0.856 4 N -0.337 5.337 5 C 0.301 3.699 6 O -0.405 6.405 7 C 0.277 3.723 8 O -0.432 6.432 9 N -0.319 5.319 10 C 0.030 3.970 11 C -0.048 4.048 12 C -0.518 4.518 13 H 0.061 0.939 14 C -0.167 4.167 15 N -0.577 5.577 16 Si 0.745 3.255 17 H -0.213 1.213 18 H -0.222 1.222 19 H -0.145 1.145 20 C -0.194 4.194 21 C -0.215 4.215 22 C 0.295 3.705 23 O -0.452 6.452 24 N -0.342 5.342 25 C -0.057 4.057 26 C -0.084 4.084 27 H 0.136 0.864 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.257 0.743 31 H 0.256 0.744 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.222 -1.922 24.147 24.325 hybrid contribution -0.472 -0.684 -0.625 1.040 sum 1.750 -2.606 23.521 23.730 Atomic orbital electron populations 1.22423 0.90648 1.03917 1.05597 1.21062 0.97434 0.98031 0.81993 0.85552 1.45523 1.64897 1.15510 1.07744 1.19897 0.78943 0.86566 0.84500 1.90764 1.49347 1.15579 1.84800 1.20258 0.79669 0.87195 0.85131 1.90715 1.52515 1.15126 1.84870 1.45733 1.65013 1.12607 1.08535 1.21186 0.98852 0.93949 0.82977 1.19436 0.90281 0.98605 0.96503 1.20402 0.98416 0.92870 1.40107 0.93866 1.25618 0.94682 1.01815 0.94582 1.70025 1.04141 1.38182 1.45364 0.86222 0.80771 0.81686 0.76830 1.21316 1.22167 1.14523 1.22857 0.97469 0.97676 1.01433 1.23119 1.03528 0.99340 0.95464 1.20630 0.80005 0.84261 0.85618 1.90721 1.39564 1.28015 1.86851 1.47776 1.51122 1.30218 1.05086 1.21825 0.99627 0.97740 0.86501 1.22469 0.95071 0.85662 1.05208 0.86375 0.91686 0.91849 0.74302 0.74420 0.94086 0.90308 0.92573 0.89665 0.88064 0.88437 0.89733 0.92959 0.86722 0.92737 0.89806 0.87932 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.12 71.98 0.66 -2.14 16 2 C 0.12 2.58 2.18 44.25 0.10 2.68 16 3 H 0.13 2.48 6.84 -2.39 -0.02 2.46 16 4 N -0.68 -19.34 4.94 -447.43 -2.21 -21.55 16 5 C 0.52 17.62 7.85 87.27 0.69 18.30 16 6 O -0.53 -19.13 16.16 -3.24 -0.05 -19.18 16 7 C 0.50 19.18 7.88 87.27 0.69 19.87 16 8 O -0.55 -23.03 16.47 -3.26 -0.05 -23.08 16 9 N -0.67 -26.89 5.46 -464.42 -2.54 -29.43 16 10 C 0.15 6.39 5.08 86.38 0.44 6.83 16 11 C -0.05 -2.03 0.85 -52.93 -0.04 -2.07 16 12 C -0.48 -25.79 9.19 25.60 0.24 -25.56 16 13 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 14 C 0.03 1.80 5.46 84.65 0.46 2.26 16 15 N -0.94 -57.27 13.96 21.45 0.30 -56.97 16 16 Si 0.92 44.02 24.70 68.60 1.69 45.72 16 17 H -0.29 -14.01 6.96 99.48 0.69 -13.32 16 18 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 19 H -0.22 -9.54 6.11 99.48 0.61 -8.93 16 20 C -0.16 -5.65 9.96 30.62 0.30 -5.34 16 21 C -0.18 -6.59 8.69 30.62 0.27 -6.33 16 22 C 0.51 10.85 7.14 87.66 0.63 11.48 16 23 O -0.57 -16.93 15.84 -3.03 -0.05 -16.98 16 24 N -0.61 -8.08 3.27 -871.88 -2.85 -10.94 16 25 C 0.08 0.89 10.16 127.77 1.30 2.19 16 26 C 0.06 0.29 8.77 127.77 1.12 1.41 16 27 H 0.12 1.07 4.53 -2.39 -0.01 1.06 16 28 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.42 12.51 7.27 -92.71 -0.67 11.84 16 31 H 0.42 17.00 7.83 -92.71 -0.73 16.27 16 32 H 0.04 1.88 4.27 -2.39 -0.01 1.87 16 33 H 0.08 2.96 8.06 -2.39 -0.02 2.94 16 34 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.11 0.34 7.79 -2.38 -0.02 0.32 16 41 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 0.19 6.95 -2.39 -0.02 0.17 16 43 H 0.10 0.05 7.92 -2.39 -0.02 0.04 16 44 H 0.08 0.43 6.01 -2.39 -0.01 0.42 16 Total: -1.00 -74.25 362.29 0.60 -73.65 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.47 Total: 35.18 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 6.83 Total: 23.58 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -7.31 Total: -118.89 kcal Atomic # 8 Polarization: -59.09 SS G_CDS: -0.15 Total: -59.24 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.69 Total: 45.72 kcal Total: -74.25 0.60 -73.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329327198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.829 kcal (2) G-P(sol) polarization free energy of solvation -74.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds